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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr4 | genome | chr4:852337..854215 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO04G03110.1 vs.
Match: EWM28798.1 (phospholipid-transporting atpase id [Nannochloropsis gaditana]) HSP 1 Score: 314.3 bits (804), Expect = 7.200e-82 Identity = 155/218 (71.10%), Postives = 181/218 (83.03%), Query Frame = 0
Query: 1 MIQEAATDIKRHRSDDETNNRLAKVTSWQSGVAVTSETVCWRDIRVGNFLYISNKQPLPADMVILASIEEENICYIETSSIDGETNLKLRRAISYLPTDAPPMADPAEIIARLEADQPTVKCELPNGRVESFSGAFNIPQHEAQTAFDTATLQTDEFDKVIPVKFENVLLRGAVLRNTAWAVRVVVYTGKDIKLQRNSRHAPSKISKIDAAVNKAIYM 219
M QEA TD+KRHRSDDETNNR+ KVTSW +G AVTSE+V WRD+ VG+ LY+SNKQPLPADMVILA+ E +NICYIETSSIDGETNLKLRRAI+YLPT P+ DPA++IAR+E DQ V+CELPN ++ESF+G F I E + + A Q+ +F+KVIP+ ENVLLRGA+LRNT WAV VVVYTGKD KLQRNSRHAPSK+SKID AVNKAIYM
Sbjct: 35 MAQEAFTDVKRHRSDDETNNRMTKVTSWNTGAAVTSESVRWRDVHVGDLLYVSNKQPLPADMVILATSESDNICYIETSSIDGETNLKLRRAINYLPTHDTPLLDPADVIARVEEDQAVVRCELPNMKIESFTGTFCISHKEEHVSSEGAP-QSGDFNKVIPIDNENVLLRGAMLRNTRWAVGVVVYTGKDTKLQRNSRHAPSKLSKIDVAVNKAIYM 251
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO04G03110.1 ID=NO04G03110.1|Name=NO04G03110.1|organism=Nannochloropsis oceanica|type=mRNA|length=1596bp ATGATTCAGGAAGCCGCCACAGACATTAAGCGGCACCGTAGCGACGACGA GACCAACAACCGCCTGGCCAAGGTCACCTCCTGGCAGTCTGGTGTGGCTG TGACAAGCGAGACGGTGTGCTGGCGTGACATCCGCGTGGGAAACTTTCTG TACATAAGCAACAAGCAGCCGTTGCCCGCTGACATGGTCATTTTGGCCAG TATCGAGGAAGAAAACATCTGCTACATCGAGACTAGCTCAATTGACGGAG AAACGAATTTGAAGCTCCGCCGCGCCATTAGCTACTTGCCAACCGACGCG CCCCCGATGGCCGACCCTGCTGAGATTATCGCACGCCTAGAAGCCGATCA ACCGACAGTGAAGTGTGAGTTGCCAAATGGGCGTGTTGAATCCTTCAGCG GTGCTTTCAACATTCCCCAGCATGAGGCCCAAACGGCCTTCGATACCGCC ACATTGCAAACGGACGAGTTCGACAAGGTCATCCCCGTTAAATTTGAGAA CGTGCTCTTGCGCGGCGCTGTATTACGGAACACTGCCTGGGCTGTTCGTG TCGTCGTTTATACTGGCAAGGACATCAAGCTGCAGCGCAACTCTCGCCAT GCCCCCTCAAAAATTAGCAAAATCGATGCGGCAGTGAACAAGGCCATCTA CATGGTCTTTCTGACGGACGTGGTGCTTGTCACAATTTCGGCCCTCATCC TCATCCTCCAGTTCGAAGACGCCTACTTCTCCGGCCTGACCAATCTGGGC TACTGCGTCCCGGGCGTGACCCCTGAGTGGGCAATGACAGCCAGGCCGGA CGGCATGCAATGGATGGCGGCCCGATCCACCTTTGTTCAGGGGTTCTTGA CCTTAATTGTCCTCTTCAACAATTTTTGCATGTACGTGACGATGGAAGTG TGTACGTACGCGCACCTGTACTTCATCAACAACGACATAGAGATGCATCA TGCTGAAAGCGACACGCCCGCCAAGGCCCGCAGCAGCATCGTTACGGACC TGGGGCAGATCGAGTACATCTTTAGCGACAAGACAGGCACCCTCACACAG AATGTCATGTGTTTCAAGCGGGCCTCTATCCAGGGCAAAGGCCTCAACTC CGACGCGCAGCCCGGCTCACAAGCTGACGACTTCCTCAAGGTGTTGGCGC TATGTCACACGGTGGTCATTGAGAGCGATGTCATGAGCAGCGAAGGTAAT ATCGAGGGCAGTGGGGCTGCCGTCATCTACCAGGCTGAGAGCCCCGACGA GAAAGCGCTGGTCGAGTTTGCCCGGGAGGCCGGCTACGAGCTCCTCTGTC GCACCACGTCCCGAATTACCATCGAGATCAATGGGTCTGCGCAGTCCTGG ACGGTGCTGGCGGTCAACAAGTTCGACTCAGACCGGAAACGGATGAGCAT AGTGGTGCGAGACGGAGAGGGCAGCATGCGCCTGCTTTGCAAGGGTGCCG ACACGGCCATGCTCTCACGAGGGAGTTGCGGGAGTGTGGAGGAGGCGACC AAGATGGTAGACCACCTCAAGACGTTTGGTCAAGAAGGACTCCGTACCCT AGTGCTGGGTTACCGGGATCTAACTGTGGACCAGTATGCAGAGTAG back to topprotein sequence of NO04G03110.1 >NO04G03110.1-protein ID=NO04G03110.1-protein|Name=NO04G03110.1|organism=Nannochloropsis oceanica|type=polypeptide|length=532bp MIQEAATDIKRHRSDDETNNRLAKVTSWQSGVAVTSETVCWRDIRVGNFL YISNKQPLPADMVILASIEEENICYIETSSIDGETNLKLRRAISYLPTDA PPMADPAEIIARLEADQPTVKCELPNGRVESFSGAFNIPQHEAQTAFDTA TLQTDEFDKVIPVKFENVLLRGAVLRNTAWAVRVVVYTGKDIKLQRNSRH APSKISKIDAAVNKAIYMVFLTDVVLVTISALILILQFEDAYFSGLTNLG YCVPGVTPEWAMTARPDGMQWMAARSTFVQGFLTLIVLFNNFCMYVTMEV CTYAHLYFINNDIEMHHAESDTPAKARSSIVTDLGQIEYIFSDKTGTLTQ NVMCFKRASIQGKGLNSDAQPGSQADDFLKVLALCHTVVIESDVMSSEGN IEGSGAAVIYQAESPDEKALVEFAREAGYELLCRTTSRITIEINGSAQSW TVLAVNKFDSDRKRMSIVVRDGEGSMRLLCKGADTAMLSRGSCGSVEEAT KMVDHLKTFGQEGLRTLVLGYRDLTVDQYAE* back to topmRNA from alignment at chr4:852337..854215+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO04G03110.1 ID=NO04G03110.1|Name=NO04G03110.1|organism=Nannochloropsis oceanica|type=mRNA|length=1879bp|location=Sequence derived from alignment at chr4:852337..854215+ (Nannochloropsis oceanica) ATGATTCAGGAAGCCGCCACAGACATTAAGCGGCACCGTAGCGACGACGA
GACCAACAACCGCCTGGCCAAGGTCACCTCCTGGCAGTCTGGTGTGGCTG
TGACAAGCGAGACGGTGTGCTGGCGTGACATCCGCGTGGGAAACTTTCTG
TACATAAGCAACAAGCAGCCGTTGCCCGCTGACATGGTCATTTTGGCCAG
TATCGAGGAAGAAAACATCTGCTACATCGAGACTAGCTCAATTGACGGAG
AAACGAATTTGAAGCTCCGCCGCGCCATTAGCTACTTGCCAACCGACGCG
CCCCCGATGGCCGACCCTGCTGAGATTATCGCACGCCTAGAAGCCGATCA
ACCGACAGTGAAGTGTGAGTTGCCAAATGGGCGTGTTGAATCCTTCAGCG
GTGCTTTCAACATTCCCCAGCATGAGGCCCAAACGGCCTTCGATACCGCC
ACATTGCAAACGGACGAGTTCGACAAGGTCATCCCCGTTAAATTTGAGAA
CGTGCTCTTGCGCGGCGCTGTATTACGGAACACTGCCTGGGCTGTTCGTG
TCGTCGTTTATACTGGCAAGGACATCAAGCTGCAGGTACATGAAGAGTGA
ACATTGTTAGCGTGCTCTGTTTTCCTTTTTTTTGGAGTACCAATTTATAT
ATCCTCTCACACTGCTTCTCCCCTCCTCCCCCCCCTTAGCGCAACTCTCG
CCATGCCCCCTCAAAAATTAGCAAAATCGATGCGGCAGTGAACAAGGCCA
TCTACATGGTCTTTCTGACGGACGTGGTGCTTGTCACAATTTCGGCCCTC
ATCCTCATCCTCCAGTTCGAAGACGCCTACTTCTCCGGCCTGACCAATCT
GGGCTACTGCGTCCCGGGCGTGACCCCTGAGTGGGCAATGACAGCCAGGC
CGGACGGCATGCAATGGATGGCGGCCCGATCCACCTTTGTTCAGGGGTTC
TTGACCTTAATTGTCCTCTTCAACAATTTTTGGTACGTAACTTCGGTTGC
AAAATAGCCTACTCTTTCTGATGTGTCGTCGTTCTTTCCTTTTATTTTCC
CGATCAGTGCTCATCATCGCTCTACTTAAATTTCCGTGCATACAGTCCCT
ATCAGCATGTACGTGACGATGGAAGTGTGTACGTACGCGCACCTGTACTT
CATCAACAACGACATAGAGATGCATCATGCTGAAAGCGACACGCCCGCCA
AGGCCCGCAGCAGCATCGTTACGGACCTGGGGCAGATCGAGTACATCTTT
AGCGACAAGACAGGCACCCTCACACAGAATGTCATGTGTTTCAAGCGGGC
CTCTATCCAGGGCAAAGTACATGGAGCGCCCGTCCTCATGACCGAAGCCA
ACGCCACACTTCCAACATTCAGGGCCTCAACTCCGACGCGCAGCCCGGCT
CACAAGCTGACGACTTCCTCAAGGTGTTGGCGCTATGTCACACGGTGGTC
ATTGAGAGCGATGTCATGAGCAGCGAAGGTAATATCGAGGGCAGTGGGGC
TGCCGTCATCTACCAGGCTGAGAGCCCCGACGAGAAAGCGCTGGTCGAGT
TTGCCCGGGAGGCCGGCTACGAGCTCCTCTGTCGCACCACGTCCCGAATT
ACCATCGAGATCAATGGGTCTGCGCAGTCCTGGACGGTGCTGGCGGTCAA
CAAGTTCGACTCAGACCGGAAACGGATGAGCATAGTGGTGCGAGACGGAG
AGGGCAGCATGCGCCTGCTTTGCAAGGGTGCCGACACGGCCATGCTCTCA
CGAGGGAGTTGCGGGAGTGTGGAGGAGGCGACCAAGATGGTAGACCACCT
CAAGACGTTTGGTCAAGAAGGACTCCGTACCCTAGTGCTGGGTTACCGGG
ATCTAACTGTGGACCAGTATGCAGAGTAG back to topCoding sequence (CDS) from alignment at chr4:852337..854215+ >NO04G03110.1 ID=NO04G03110.1|Name=NO04G03110.1|organism=Nannochloropsis oceanica|type=CDS|length=1596bp|location=Sequence derived from alignment at chr4:852337..854215+ (Nannochloropsis oceanica) ATGATTCAGGAAGCCGCCACAGACATTAAGCGGCACCGTAGCGACGACGA GACCAACAACCGCCTGGCCAAGGTCACCTCCTGGCAGTCTGGTGTGGCTG TGACAAGCGAGACGGTGTGCTGGCGTGACATCCGCGTGGGAAACTTTCTG TACATAAGCAACAAGCAGCCGTTGCCCGCTGACATGGTCATTTTGGCCAG TATCGAGGAAGAAAACATCTGCTACATCGAGACTAGCTCAATTGACGGAG AAACGAATTTGAAGCTCCGCCGCGCCATTAGCTACTTGCCAACCGACGCG CCCCCGATGGCCGACCCTGCTGAGATTATCGCACGCCTAGAAGCCGATCA ACCGACAGTGAAGTGTGAGTTGCCAAATGGGCGTGTTGAATCCTTCAGCG GTGCTTTCAACATTCCCCAGCATGAGGCCCAAACGGCCTTCGATACCGCC ACATTGCAAACGGACGAGTTCGACAAGGTCATCCCCGTTAAATTTGAGAA CGTGCTCTTGCGCGGCGCTGTATTACGGAACACTGCCTGGGCTGTTCGTG TCGTCGTTTATACTGGCAAGGACATCAAGCTGCAGCGCAACTCTCGCCAT GCCCCCTCAAAAATTAGCAAAATCGATGCGGCAGTGAACAAGGCCATCTA CATGGTCTTTCTGACGGACGTGGTGCTTGTCACAATTTCGGCCCTCATCC TCATCCTCCAGTTCGAAGACGCCTACTTCTCCGGCCTGACCAATCTGGGC TACTGCGTCCCGGGCGTGACCCCTGAGTGGGCAATGACAGCCAGGCCGGA CGGCATGCAATGGATGGCGGCCCGATCCACCTTTGTTCAGGGGTTCTTGA CCTTAATTGTCCTCTTCAACAATTTTTGCATGTACGTGACGATGGAAGTG TGTACGTACGCGCACCTGTACTTCATCAACAACGACATAGAGATGCATCA TGCTGAAAGCGACACGCCCGCCAAGGCCCGCAGCAGCATCGTTACGGACC TGGGGCAGATCGAGTACATCTTTAGCGACAAGACAGGCACCCTCACACAG AATGTCATGTGTTTCAAGCGGGCCTCTATCCAGGGCAAAGGCCTCAACTC CGACGCGCAGCCCGGCTCACAAGCTGACGACTTCCTCAAGGTGTTGGCGC TATGTCACACGGTGGTCATTGAGAGCGATGTCATGAGCAGCGAAGGTAAT ATCGAGGGCAGTGGGGCTGCCGTCATCTACCAGGCTGAGAGCCCCGACGA GAAAGCGCTGGTCGAGTTTGCCCGGGAGGCCGGCTACGAGCTCCTCTGTC GCACCACGTCCCGAATTACCATCGAGATCAATGGGTCTGCGCAGTCCTGG ACGGTGCTGGCGGTCAACAAGTTCGACTCAGACCGGAAACGGATGAGCAT AGTGGTGCGAGACGGAGAGGGCAGCATGCGCCTGCTTTGCAAGGGTGCCG ACACGGCCATGCTCTCACGAGGGAGTTGCGGGAGTGTGGAGGAGGCGACC AAGATGGTAGACCACCTCAAGACGTTTGGTCAAGAAGGACTCCGTACCCT AGTGCTGGGTTACCGGGATCTAACTGTGGACCAGTATGCAGAGTAG back to top
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