NO04G03110.1, NO04G03110.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO04G03110.1
Unique NameNO04G03110.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1596
Alignment locationchr4:852337..854215 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:852337..854215 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO04G03110.1 vs.
Match: EWM28798.1 (phospholipid-transporting atpase id [Nannochloropsis gaditana])

HSP 1 Score: 314.3 bits (804), Expect = 7.200e-82
Identity = 155/218 (71.10%), Postives = 181/218 (83.03%), Query Frame = 0
Query:    1 MIQEAATDIKRHRSDDETNNRLAKVTSWQSGVAVTSETVCWRDIRVGNFLYISNKQPLPADMVILASIEEENICYIETSSIDGETNLKLRRAISYLPTDAPPMADPAEIIARLEADQPTVKCELPNGRVESFSGAFNIPQHEAQTAFDTATLQTDEFDKVIPVKFENVLLRGAVLRNTAWAVRVVVYTGKDIKLQRNSRHAPSKISKIDAAVNKAIYM 219
            M QEA TD+KRHRSDDETNNR+ KVTSW +G AVTSE+V WRD+ VG+ LY+SNKQPLPADMVILA+ E +NICYIETSSIDGETNLKLRRAI+YLPT   P+ DPA++IAR+E DQ  V+CELPN ++ESF+G F I   E   + + A  Q+ +F+KVIP+  ENVLLRGA+LRNT WAV VVVYTGKD KLQRNSRHAPSK+SKID AVNKAIYM
Sbjct:   35 MAQEAFTDVKRHRSDDETNNRMTKVTSWNTGAAVTSESVRWRDVHVGDLLYVSNKQPLPADMVILATSESDNICYIETSSIDGETNLKLRRAINYLPTHDTPLLDPADVIARVEEDQAVVRCELPNMKIESFTGTFCISHKEEHVSSEGAP-QSGDFNKVIPIDNENVLLRGAMLRNTRWAVGVVVYTGKDTKLQRNSRHAPSKLSKIDVAVNKAIYM 251          
The following BLAST results are available for this feature:
BLAST of NO04G03110.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28798.17.200e-8271.10phospholipid-transporting atpase id [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO04G03110NO04G03110Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO04G03110.1NO04G03110.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO04G03110.1.cds1NO04G03110.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G03110.1.cds2NO04G03110.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G03110.1.cds3NO04G03110.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G03110.1.cds4NO04G03110.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO04G03110.1 ID=NO04G03110.1|Name=NO04G03110.1|organism=Nannochloropsis oceanica|type=mRNA|length=1596bp
ATGATTCAGGAAGCCGCCACAGACATTAAGCGGCACCGTAGCGACGACGA
GACCAACAACCGCCTGGCCAAGGTCACCTCCTGGCAGTCTGGTGTGGCTG
TGACAAGCGAGACGGTGTGCTGGCGTGACATCCGCGTGGGAAACTTTCTG
TACATAAGCAACAAGCAGCCGTTGCCCGCTGACATGGTCATTTTGGCCAG
TATCGAGGAAGAAAACATCTGCTACATCGAGACTAGCTCAATTGACGGAG
AAACGAATTTGAAGCTCCGCCGCGCCATTAGCTACTTGCCAACCGACGCG
CCCCCGATGGCCGACCCTGCTGAGATTATCGCACGCCTAGAAGCCGATCA
ACCGACAGTGAAGTGTGAGTTGCCAAATGGGCGTGTTGAATCCTTCAGCG
GTGCTTTCAACATTCCCCAGCATGAGGCCCAAACGGCCTTCGATACCGCC
ACATTGCAAACGGACGAGTTCGACAAGGTCATCCCCGTTAAATTTGAGAA
CGTGCTCTTGCGCGGCGCTGTATTACGGAACACTGCCTGGGCTGTTCGTG
TCGTCGTTTATACTGGCAAGGACATCAAGCTGCAGCGCAACTCTCGCCAT
GCCCCCTCAAAAATTAGCAAAATCGATGCGGCAGTGAACAAGGCCATCTA
CATGGTCTTTCTGACGGACGTGGTGCTTGTCACAATTTCGGCCCTCATCC
TCATCCTCCAGTTCGAAGACGCCTACTTCTCCGGCCTGACCAATCTGGGC
TACTGCGTCCCGGGCGTGACCCCTGAGTGGGCAATGACAGCCAGGCCGGA
CGGCATGCAATGGATGGCGGCCCGATCCACCTTTGTTCAGGGGTTCTTGA
CCTTAATTGTCCTCTTCAACAATTTTTGCATGTACGTGACGATGGAAGTG
TGTACGTACGCGCACCTGTACTTCATCAACAACGACATAGAGATGCATCA
TGCTGAAAGCGACACGCCCGCCAAGGCCCGCAGCAGCATCGTTACGGACC
TGGGGCAGATCGAGTACATCTTTAGCGACAAGACAGGCACCCTCACACAG
AATGTCATGTGTTTCAAGCGGGCCTCTATCCAGGGCAAAGGCCTCAACTC
CGACGCGCAGCCCGGCTCACAAGCTGACGACTTCCTCAAGGTGTTGGCGC
TATGTCACACGGTGGTCATTGAGAGCGATGTCATGAGCAGCGAAGGTAAT
ATCGAGGGCAGTGGGGCTGCCGTCATCTACCAGGCTGAGAGCCCCGACGA
GAAAGCGCTGGTCGAGTTTGCCCGGGAGGCCGGCTACGAGCTCCTCTGTC
GCACCACGTCCCGAATTACCATCGAGATCAATGGGTCTGCGCAGTCCTGG
ACGGTGCTGGCGGTCAACAAGTTCGACTCAGACCGGAAACGGATGAGCAT
AGTGGTGCGAGACGGAGAGGGCAGCATGCGCCTGCTTTGCAAGGGTGCCG
ACACGGCCATGCTCTCACGAGGGAGTTGCGGGAGTGTGGAGGAGGCGACC
AAGATGGTAGACCACCTCAAGACGTTTGGTCAAGAAGGACTCCGTACCCT
AGTGCTGGGTTACCGGGATCTAACTGTGGACCAGTATGCAGAGTAG
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protein sequence of NO04G03110.1

>NO04G03110.1-protein ID=NO04G03110.1-protein|Name=NO04G03110.1|organism=Nannochloropsis oceanica|type=polypeptide|length=532bp
MIQEAATDIKRHRSDDETNNRLAKVTSWQSGVAVTSETVCWRDIRVGNFL
YISNKQPLPADMVILASIEEENICYIETSSIDGETNLKLRRAISYLPTDA
PPMADPAEIIARLEADQPTVKCELPNGRVESFSGAFNIPQHEAQTAFDTA
TLQTDEFDKVIPVKFENVLLRGAVLRNTAWAVRVVVYTGKDIKLQRNSRH
APSKISKIDAAVNKAIYMVFLTDVVLVTISALILILQFEDAYFSGLTNLG
YCVPGVTPEWAMTARPDGMQWMAARSTFVQGFLTLIVLFNNFCMYVTMEV
CTYAHLYFINNDIEMHHAESDTPAKARSSIVTDLGQIEYIFSDKTGTLTQ
NVMCFKRASIQGKGLNSDAQPGSQADDFLKVLALCHTVVIESDVMSSEGN
IEGSGAAVIYQAESPDEKALVEFAREAGYELLCRTTSRITIEINGSAQSW
TVLAVNKFDSDRKRMSIVVRDGEGSMRLLCKGADTAMLSRGSCGSVEEAT
KMVDHLKTFGQEGLRTLVLGYRDLTVDQYAE*
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mRNA from alignment at chr4:852337..854215+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO04G03110.1 ID=NO04G03110.1|Name=NO04G03110.1|organism=Nannochloropsis oceanica|type=mRNA|length=1879bp|location=Sequence derived from alignment at chr4:852337..854215+ (Nannochloropsis oceanica)
ATGATTCAGGAAGCCGCCACAGACATTAAGCGGCACCGTAGCGACGACGA GACCAACAACCGCCTGGCCAAGGTCACCTCCTGGCAGTCTGGTGTGGCTG TGACAAGCGAGACGGTGTGCTGGCGTGACATCCGCGTGGGAAACTTTCTG TACATAAGCAACAAGCAGCCGTTGCCCGCTGACATGGTCATTTTGGCCAG TATCGAGGAAGAAAACATCTGCTACATCGAGACTAGCTCAATTGACGGAG AAACGAATTTGAAGCTCCGCCGCGCCATTAGCTACTTGCCAACCGACGCG CCCCCGATGGCCGACCCTGCTGAGATTATCGCACGCCTAGAAGCCGATCA ACCGACAGTGAAGTGTGAGTTGCCAAATGGGCGTGTTGAATCCTTCAGCG GTGCTTTCAACATTCCCCAGCATGAGGCCCAAACGGCCTTCGATACCGCC ACATTGCAAACGGACGAGTTCGACAAGGTCATCCCCGTTAAATTTGAGAA CGTGCTCTTGCGCGGCGCTGTATTACGGAACACTGCCTGGGCTGTTCGTG TCGTCGTTTATACTGGCAAGGACATCAAGCTGCAGGTACATGAAGAGTGA ACATTGTTAGCGTGCTCTGTTTTCCTTTTTTTTGGAGTACCAATTTATAT ATCCTCTCACACTGCTTCTCCCCTCCTCCCCCCCCTTAGCGCAACTCTCG CCATGCCCCCTCAAAAATTAGCAAAATCGATGCGGCAGTGAACAAGGCCA TCTACATGGTCTTTCTGACGGACGTGGTGCTTGTCACAATTTCGGCCCTC ATCCTCATCCTCCAGTTCGAAGACGCCTACTTCTCCGGCCTGACCAATCT GGGCTACTGCGTCCCGGGCGTGACCCCTGAGTGGGCAATGACAGCCAGGC CGGACGGCATGCAATGGATGGCGGCCCGATCCACCTTTGTTCAGGGGTTC TTGACCTTAATTGTCCTCTTCAACAATTTTTGGTACGTAACTTCGGTTGC AAAATAGCCTACTCTTTCTGATGTGTCGTCGTTCTTTCCTTTTATTTTCC CGATCAGTGCTCATCATCGCTCTACTTAAATTTCCGTGCATACAGTCCCT ATCAGCATGTACGTGACGATGGAAGTGTGTACGTACGCGCACCTGTACTT CATCAACAACGACATAGAGATGCATCATGCTGAAAGCGACACGCCCGCCA AGGCCCGCAGCAGCATCGTTACGGACCTGGGGCAGATCGAGTACATCTTT AGCGACAAGACAGGCACCCTCACACAGAATGTCATGTGTTTCAAGCGGGC CTCTATCCAGGGCAAAGTACATGGAGCGCCCGTCCTCATGACCGAAGCCA ACGCCACACTTCCAACATTCAGGGCCTCAACTCCGACGCGCAGCCCGGCT CACAAGCTGACGACTTCCTCAAGGTGTTGGCGCTATGTCACACGGTGGTC ATTGAGAGCGATGTCATGAGCAGCGAAGGTAATATCGAGGGCAGTGGGGC TGCCGTCATCTACCAGGCTGAGAGCCCCGACGAGAAAGCGCTGGTCGAGT TTGCCCGGGAGGCCGGCTACGAGCTCCTCTGTCGCACCACGTCCCGAATT ACCATCGAGATCAATGGGTCTGCGCAGTCCTGGACGGTGCTGGCGGTCAA CAAGTTCGACTCAGACCGGAAACGGATGAGCATAGTGGTGCGAGACGGAG AGGGCAGCATGCGCCTGCTTTGCAAGGGTGCCGACACGGCCATGCTCTCA CGAGGGAGTTGCGGGAGTGTGGAGGAGGCGACCAAGATGGTAGACCACCT CAAGACGTTTGGTCAAGAAGGACTCCGTACCCTAGTGCTGGGTTACCGGG ATCTAACTGTGGACCAGTATGCAGAGTAG
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Coding sequence (CDS) from alignment at chr4:852337..854215+

>NO04G03110.1 ID=NO04G03110.1|Name=NO04G03110.1|organism=Nannochloropsis oceanica|type=CDS|length=1596bp|location=Sequence derived from alignment at chr4:852337..854215+ (Nannochloropsis oceanica)
ATGATTCAGGAAGCCGCCACAGACATTAAGCGGCACCGTAGCGACGACGA
GACCAACAACCGCCTGGCCAAGGTCACCTCCTGGCAGTCTGGTGTGGCTG
TGACAAGCGAGACGGTGTGCTGGCGTGACATCCGCGTGGGAAACTTTCTG
TACATAAGCAACAAGCAGCCGTTGCCCGCTGACATGGTCATTTTGGCCAG
TATCGAGGAAGAAAACATCTGCTACATCGAGACTAGCTCAATTGACGGAG
AAACGAATTTGAAGCTCCGCCGCGCCATTAGCTACTTGCCAACCGACGCG
CCCCCGATGGCCGACCCTGCTGAGATTATCGCACGCCTAGAAGCCGATCA
ACCGACAGTGAAGTGTGAGTTGCCAAATGGGCGTGTTGAATCCTTCAGCG
GTGCTTTCAACATTCCCCAGCATGAGGCCCAAACGGCCTTCGATACCGCC
ACATTGCAAACGGACGAGTTCGACAAGGTCATCCCCGTTAAATTTGAGAA
CGTGCTCTTGCGCGGCGCTGTATTACGGAACACTGCCTGGGCTGTTCGTG
TCGTCGTTTATACTGGCAAGGACATCAAGCTGCAGCGCAACTCTCGCCAT
GCCCCCTCAAAAATTAGCAAAATCGATGCGGCAGTGAACAAGGCCATCTA
CATGGTCTTTCTGACGGACGTGGTGCTTGTCACAATTTCGGCCCTCATCC
TCATCCTCCAGTTCGAAGACGCCTACTTCTCCGGCCTGACCAATCTGGGC
TACTGCGTCCCGGGCGTGACCCCTGAGTGGGCAATGACAGCCAGGCCGGA
CGGCATGCAATGGATGGCGGCCCGATCCACCTTTGTTCAGGGGTTCTTGA
CCTTAATTGTCCTCTTCAACAATTTTTGCATGTACGTGACGATGGAAGTG
TGTACGTACGCGCACCTGTACTTCATCAACAACGACATAGAGATGCATCA
TGCTGAAAGCGACACGCCCGCCAAGGCCCGCAGCAGCATCGTTACGGACC
TGGGGCAGATCGAGTACATCTTTAGCGACAAGACAGGCACCCTCACACAG
AATGTCATGTGTTTCAAGCGGGCCTCTATCCAGGGCAAAGGCCTCAACTC
CGACGCGCAGCCCGGCTCACAAGCTGACGACTTCCTCAAGGTGTTGGCGC
TATGTCACACGGTGGTCATTGAGAGCGATGTCATGAGCAGCGAAGGTAAT
ATCGAGGGCAGTGGGGCTGCCGTCATCTACCAGGCTGAGAGCCCCGACGA
GAAAGCGCTGGTCGAGTTTGCCCGGGAGGCCGGCTACGAGCTCCTCTGTC
GCACCACGTCCCGAATTACCATCGAGATCAATGGGTCTGCGCAGTCCTGG
ACGGTGCTGGCGGTCAACAAGTTCGACTCAGACCGGAAACGGATGAGCAT
AGTGGTGCGAGACGGAGAGGGCAGCATGCGCCTGCTTTGCAAGGGTGCCG
ACACGGCCATGCTCTCACGAGGGAGTTGCGGGAGTGTGGAGGAGGCGACC
AAGATGGTAGACCACCTCAAGACGTTTGGTCAAGAAGGACTCCGTACCCT
AGTGCTGGGTTACCGGGATCTAACTGTGGACCAGTATGCAGAGTAG
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Synonyms
Publications