NO04G03040.1, NO04G03040.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO04G03040.1
Unique NameNO04G03040.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1784
Alignment locationchr4:815982..817765 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:815982..817765 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO04G03040.1 vs.
Match: EWM28720.1 (gpn-loop gtpase 3 [Nannochloropsis gaditana])

HSP 1 Score: 331.3 bits (848), Expect = 3.100e-87
Identity = 165/197 (83.76%), Postives = 183/197 (92.89%), Query Frame = 0 
Query:   87 MEYLLENLEWLEERLGLFAEDDYLVFDCPGQVELYSHIPVMKNLVEFLVKGPLGFAVCGIYLIDAHFMMDPSKFVAGALLCLSTMIALEIPQVNVISKADLVGKEELEQILEMDSAAMVARMGHLAMHVRLQPLTRMIASVVDDYTLVGFLPLDPNEEDSWDAILAQADMALQYGEDLEPREPRDYVEGEGDAEGEE 284
            MEYLLENLEWLEERL +FAE DYLVFDCPGQVELYSHIPVMK+LV+FLVKGPL  +VCG+YLIDAHFM+DPSKFVAGALLCLSTMIALE+PQVN+ISKADLV KEE+E++L+MDSAAMVARMGHLA H RLQPLT  IA+VVDDYTLVGFLPLDPN+E+SWDAILAQADMALQ+GEDLEPREPRD V G+G  E E+
Sbjct:    1 MEYLLENLEWLEERLEVFAEGDYLVFDCPGQVELYSHIPVMKHLVDFLVKGPLSLSVCGVYLIDAHFMVDPSKFVAGALLCLSTMIALEVPQVNIISKADLVDKEEIERVLDMDSAAMVARMGHLAAHGRLQPLTHTIAAVVDDYTLVGFLPLDPNDENSWDAILAQADMALQFGEDLEPREPRDDV-GDGRTEDED 196
The following BLAST results are available for this feature:
BLAST of NO04G03040.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28720.13.100e-8783.76gpn-loop gtpase 3 [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO04G03040NO04G03040Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO04G03040.1NO04G03040.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO04G03040.1.cds1NO04G03040.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO04G03040.1 ID=NO04G03040.1|Name=NO04G03040.1|organism=Nannochloropsis oceanica|type=mRNA|length=1784bp
GGGCGATAGAACCTCTGTCTTTGATGTAAAGGGAATAGAGATTAACACAT
GTGTTTGGGTGAAGATACGTCGTGAGATCGCAAGCGAGAAAAAAAAAGAA
ATATGCACCAACCGGGAATCGCACAGGCTTACGACAATCTGAGCACAACC
AAATCGCTCGATTGGTGACGGAAATCATATCGCAAGGAACCCGGGCCTAA
ACCTTGGGAAGGTTCAATCCTACCACTAGACTATTGGTGCAGTTGATCAA
CGTTCGGGGTGACCAATACTATCTATATTTTCTACCCCAAGTGCAAATCC
TCTTTTTTATGCCTTTAAGTTGCCATGTTATCCCTCACCACAATACATAC
GACTCAAGAGAACCACCCAATTTTAGTAACAAAGGAAAGTATACAGTATA
CAGGTAGGGTTAACATTTTTGGTGGCAATTGTGATTTCTTATATTTGCGA
AAGGGTTGTATCGACATCGAGACTCTTTCGTGGACAATTTTTCAAGAAGA
GGTCAGTTTCTGGCTCCTTCTCTGCCCGCATGATCATGCCTTGATCTTCT
ATCACACGGGCAACACTGGTACCTGTACATTTGCGGGCTTTTTTTGCCGT
CGATTTGTGTCGTCTAGCTGCCCTACTATCCGAGATTCCCCAGCCTTCTC
AGGGGACACTATCTAACGCCCTATCAAAACCCCAAAAAATAATGGCAGGG
CGTACCATGGTGCTGCTACCCTCACATAGCCTTATAAGCGTGTTCACGAT
CAAGAACGGTGTGTTATCCCATTTACTGTGATAGGTTTTCCGTCAAATAG
GATTTTTTAGTCTCCTGCTCCCGCTTGCAGGCAACATCCACCATGCCTCG
ATGTTGCCAACTCGTCATGGGGCCCGCCGGTGTAGGCAAGTCCACATACT
GCAAGCTTTTACAAGAACATAGCACTGCCCAGCAGGGACCTGGGGCTCAG
CGTCGCGCCGTGCACGTCATTAATCTTGACCCGGCGGCCGAGGGGCCCTT
CGCCTACTCGACACCAGAAGTAGACGTACGGGAGCTCATTACTGTAGACG
ACGTCATGGAAATGATGGATTTGGGGCCAAACGGTGCATTAGTGTATTGC
ATGGAATACTTGTTGGAAAATTTGGAATGGCTGGAGGAGCGGCTGGGGTT
GTTTGCGGAGGATGATTATTTGGTCTTTGATTGCCCGGGCCAGGTTGAGC
TGTATTCGCACATTCCTGTTATGAAAAATCTGGTGGAATTTCTCGTCAAA
GGCCCGCTGGGCTTTGCTGTGTGTGGGATTTATTTGATCGATGCGCATTT
TATGATGGACCCGAGTAAATTTGTGGCGGGTGCGCTGCTTTGTCTCTCGA
CCATGATTGCTCTAGAGATACCTCAAGTGAATGTTATTTCCAAGGCAGAC
CTTGTTGGTAAGGAGGAGCTGGAACAAATACTGGAGATGGATTCTGCGGC
TATGGTGGCACGGATGGGTCATTTGGCTATGCATGTACGTCTGCAGCCGT
TGACAAGAATGATTGCCTCCGTGGTCGATGACTATACCTTGGTTGGTTTT
TTGCCTTTGGACCCAAACGAGGAGGATAGCTGGGACGCGATTTTGGCGCA
GGCTGACATGGCGTTGCAGTATGGGGAGGACTTAGAGCCACGGGAGCCGC
GAGATTATGTGGAGGGAGAGGGCGATGCGGAGGGGGAGGAAGAGAGCGGC
AATGGTGAACAAGTGTTCGAATAGAAAACAATATGGAATGAGGTTAAAAG
TAAAACAAAGCACAATAAAAAGTTTTAAAAATCG
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protein sequence of NO04G03040.1

>NO04G03040.1-protein ID=NO04G03040.1-protein|Name=NO04G03040.1|organism=Nannochloropsis oceanica|type=polypeptide|length=294bp
MPRCCQLVMGPAGVGKSTYCKLLQEHSTAQQGPGAQRRAVHVINLDPAAE
GPFAYSTPEVDVRELITVDDVMEMMDLGPNGALVYCMEYLLENLEWLEER
LGLFAEDDYLVFDCPGQVELYSHIPVMKNLVEFLVKGPLGFAVCGIYLID
AHFMMDPSKFVAGALLCLSTMIALEIPQVNVISKADLVGKEELEQILEMD
SAAMVARMGHLAMHVRLQPLTRMIASVVDDYTLVGFLPLDPNEEDSWDAI
LAQADMALQYGEDLEPREPRDYVEGEGDAEGEEESGNGEQVFE*
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mRNA from alignment at chr4:815982..817765+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO04G03040.1 ID=NO04G03040.1|Name=NO04G03040.1|organism=Nannochloropsis oceanica|type=mRNA|length=1784bp|location=Sequence derived from alignment at chr4:815982..817765+ (Nannochloropsis oceanica)
GGGCGATAGAACCTCTGTCTTTGATGTAAAGGGAATAGAGATTAACACAT
GTGTTTGGGTGAAGATACGTCGTGAGATCGCAAGCGAGAAAAAAAAAGAA
ATATGCACCAACCGGGAATCGCACAGGCTTACGACAATCTGAGCACAACC
AAATCGCTCGATTGGTGACGGAAATCATATCGCAAGGAACCCGGGCCTAA
ACCTTGGGAAGGTTCAATCCTACCACTAGACTATTGGTGCAGTTGATCAA
CGTTCGGGGTGACCAATACTATCTATATTTTCTACCCCAAGTGCAAATCC
TCTTTTTTATGCCTTTAAGTTGCCATGTTATCCCTCACCACAATACATAC
GACTCAAGAGAACCACCCAATTTTAGTAACAAAGGAAAGTATACAGTATA
CAGGTAGGGTTAACATTTTTGGTGGCAATTGTGATTTCTTATATTTGCGA
AAGGGTTGTATCGACATCGAGACTCTTTCGTGGACAATTTTTCAAGAAGA
GGTCAGTTTCTGGCTCCTTCTCTGCCCGCATGATCATGCCTTGATCTTCT
ATCACACGGGCAACACTGGTACCTGTACATTTGCGGGCTTTTTTTGCCGT
CGATTTGTGTCGTCTAGCTGCCCTACTATCCGAGATTCCCCAGCCTTCTC
AGGGGACACTATCTAACGCCCTATCAAAACCCCAAAAAATAATGGCAGGG
CGTACCATGGTGCTGCTACCCTCACATAGCCTTATAAGCGTGTTCACGAT
CAAGAACGGTGTGTTATCCCATTTACTGTGATAGGTTTTCCGTCAAATAG
GATTTTTTAGTCTCCTGCTCCCGCTTGCAGGCAACATCCACCATGCCTCG
ATGTTGCCAACTCGTCATGGGGCCCGCCGGTGTAGGCAAGTCCACATACT
GCAAGCTTTTACAAGAACATAGCACTGCCCAGCAGGGACCTGGGGCTCAG
CGTCGCGCCGTGCACGTCATTAATCTTGACCCGGCGGCCGAGGGGCCCTT
CGCCTACTCGACACCAGAAGTAGACGTACGGGAGCTCATTACTGTAGACG
ACGTCATGGAAATGATGGATTTGGGGCCAAACGGTGCATTAGTGTATTGC
ATGGAATACTTGTTGGAAAATTTGGAATGGCTGGAGGAGCGGCTGGGGTT
GTTTGCGGAGGATGATTATTTGGTCTTTGATTGCCCGGGCCAGGTTGAGC
TGTATTCGCACATTCCTGTTATGAAAAATCTGGTGGAATTTCTCGTCAAA
GGCCCGCTGGGCTTTGCTGTGTGTGGGATTTATTTGATCGATGCGCATTT
TATGATGGACCCGAGTAAATTTGTGGCGGGTGCGCTGCTTTGTCTCTCGA
CCATGATTGCTCTAGAGATACCTCAAGTGAATGTTATTTCCAAGGCAGAC
CTTGTTGGTAAGGAGGAGCTGGAACAAATACTGGAGATGGATTCTGCGGC
TATGGTGGCACGGATGGGTCATTTGGCTATGCATGTACGTCTGCAGCCGT
TGACAAGAATGATTGCCTCCGTGGTCGATGACTATACCTTGGTTGGTTTT
TTGCCTTTGGACCCAAACGAGGAGGATAGCTGGGACGCGATTTTGGCGCA
GGCTGACATGGCGTTGCAGTATGGGGAGGACTTAGAGCCACGGGAGCCGC
GAGATTATGTGGAGGGAGAGGGCGATGCGGAGGGGGAGGAAGAGAGCGGC
AATGGTGAACAAGTGTTCGAATAGAAAACAATATGGAATGAGGTTAAAAG
TAAAACAAAGCACAATAAAAAGTTTTAAAAATCG
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Coding sequence (CDS) from alignment at chr4:815982..817765+

>NO04G03040.1 ID=NO04G03040.1|Name=NO04G03040.1|organism=Nannochloropsis oceanica|type=CDS|length=882bp|location=Sequence derived from alignment at chr4:815982..817765+ (Nannochloropsis oceanica)
ATGCCTCGATGTTGCCAACTCGTCATGGGGCCCGCCGGTGTAGGCAAGTC
CACATACTGCAAGCTTTTACAAGAACATAGCACTGCCCAGCAGGGACCTG
GGGCTCAGCGTCGCGCCGTGCACGTCATTAATCTTGACCCGGCGGCCGAG
GGGCCCTTCGCCTACTCGACACCAGAAGTAGACGTACGGGAGCTCATTAC
TGTAGACGACGTCATGGAAATGATGGATTTGGGGCCAAACGGTGCATTAG
TGTATTGCATGGAATACTTGTTGGAAAATTTGGAATGGCTGGAGGAGCGG
CTGGGGTTGTTTGCGGAGGATGATTATTTGGTCTTTGATTGCCCGGGCCA
GGTTGAGCTGTATTCGCACATTCCTGTTATGAAAAATCTGGTGGAATTTC
TCGTCAAAGGCCCGCTGGGCTTTGCTGTGTGTGGGATTTATTTGATCGAT
GCGCATTTTATGATGGACCCGAGTAAATTTGTGGCGGGTGCGCTGCTTTG
TCTCTCGACCATGATTGCTCTAGAGATACCTCAAGTGAATGTTATTTCCA
AGGCAGACCTTGTTGGTAAGGAGGAGCTGGAACAAATACTGGAGATGGAT
TCTGCGGCTATGGTGGCACGGATGGGTCATTTGGCTATGCATGTACGTCT
GCAGCCGTTGACAAGAATGATTGCCTCCGTGGTCGATGACTATACCTTGG
TTGGTTTTTTGCCTTTGGACCCAAACGAGGAGGATAGCTGGGACGCGATT
TTGGCGCAGGCTGACATGGCGTTGCAGTATGGGGAGGACTTAGAGCCACG
GGAGCCGCGAGATTATGTGGAGGGAGAGGGCGATGCGGAGGGGGAGGAAG
AGAGCGGCAATGGTGAACAAGTGTTCGAATAG
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Synonyms
Publications