NO04G03030.1, NO04G03030.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO04G03030.1
Unique Name	NO04G03030.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2994
Alignment location	chr4:811745..814738 +

Link to JBrowse

Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr4	genome	chr4:811745..814738 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

The following BLAST results are available for this feature:

BLAST of NO04G03030.1 vs.

BLAST of NO04G03030.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO04G03030	NO04G03030	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO04G03030.1	NO04G03030.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO04G03030.1.cds1	NO04G03030.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr4:811745..814738+
coding sequence from alignment at chr4:811745..814738+

mRNA sequence

>NO04G03030.1 ID=NO04G03030.1|Name=NO04G03030.1|organism=Nannochloropsis oceanica|type=mRNA|length=2994bp
AGATACTTGTTGTGCCCGGGCGCCATTCCACCATAGCGTCTTCTTGATAA
TCAAATCCACCACCCCCTCCAACCGACCCACCCAGCCCCCCATCAGCATC
AGTGAAGGACCCATTCAAGCTTCTTGGCATCGAGGAGGAAGGACCCGATG
GCGCTGATGTGGGCTACGGCTACCTGTGTGATGAACTTACTATAAACCCA
CGGAAAAGTGACCTGATCTGCAAGACATGCAGACCCGAATTTCTTGTGTT
GTGGCAGCAGCAGATGGATCCACGGCCGGGGAAGCCGCGGCAGTTGAACA
AGGGCACCCTCCGAACCCACATGAAAAATTAGAGTGCATGGCCTCCTCGT
AGGGGCTGCTAAGAATAGGAGGAAGAGGGCCGTGTACAATTCCTGAAGCC
GGTGGAGAAGTCACAGCAGCGGCACCAGCACCAGCAGCGACGGGGCGATA
GAGGGGGCGATTGTGATGATGATGACGAGGAGGACGACGAGGAAGACGAG
CAACAACAACAGCAGCAGCAATCATCACCATCAGCAACTTCTCTTGCAGC
TTTTTTTTCTCCTACTGACAACATTTCTTGGAAGCTCTGCAGAGGCATTT
CGACGACCGGCCCCGTTGAGTAGGGTTGTAGACCCCGACAGCTGGGGGCT
CCAAAACATATCTGCGAGACGTTCCTCTGTCTTACCCCAATACCTCCATA
TTCAACATTCGGTTGGTCCATTGCATCGAAATCTCCACCCAAGGATTTTA
CGCCAAAAAGCATGGATCTTCGAAGGATTGCCATGTGGTAGTGAGCAGGA
AGGAGGAGACCTGAGAGGCTTGTTTGGCTTTAAAGGATGAGGGGCAACTT
GAGAAAGACCTCAAAAAGCACAAAGAAGGATATGAGGGCGAAGGGAGTGG
AGGAGGAAGAAGGAGAGGGGAAAGAAGCAGAGGATGGTGTTGATGAGGAA
GATGCGGGGGAGTGAGTGGCAAAGGGGAGAATGAGCACTATTCCATCATA
ATTTCTCAATCTTAATTTTCTATAATTCGCATACTGCTGAAAGCTTTTGA
GGGTGCAAGAGTTTTGGACTCGGTTTGTTGTGTTTCGACTTCTAAGCATC
AGCATACTAGGCATTTCTGTCGTAGCTATCCTACAAACCTAGAACTATCA
TATGCAACCTCACGGCCTCTAGGAATTGCACAGAAGGGGAAGCCTTTCAA
CAATAAAATATTGCATATATTTCCCCTTATATTTTCCGAGTATTTGTAGC
GACTTTGACAGGTTTTACACCTAGCAAAGTCCCCGGACGGTCCAAACAGG
GCCAGGAGGAGGGGGGGGGGGGGGGAAGAGGAGGTCACAGGGGAGGCAAC
ACATAGAGTGTCCGCATATCCTGCCGCGGTTGACCATCATGGGGACGAGC
TTCTCCACGGACCATACTCCTGTACACCCTCAGAATGTTAAGTGCCCCAT
TGCCGTCCTGAGATGCAAACTGTTCACACGTCTCATACCAGCAAAGTCCT
CGGATGGCCGGCACGTAACCTCCTCCGCCTTCTCCGCCTTCTCTGCCTCC
TCCGCCTCCTCCGCCTCCTCATTCGCCTCGTCCTCCTCCTCTTTCTCTTC
CTCTTCCTCCGCCTCCGCCTCCTCCTGGAACTCCTCCTCCTCCTCCTCCT
CTTCCTCTTCCTCCTCCGTCCCTCCCTCCCCCTCTGCCTCCTCCTTCTCC
TACTATTGCTCCTCCTTCTTCTCTTCTCTCCACTCCTCCTTGTACCCTTC
CCCCTCCTCCTCCTTCTCTCCCTCCTCTCCCTCTCCCTCCTTCTCTCCCT
CCTCCTCCTTCTCTCCCTCCTCCTCCTGTGGGTGTGTGAGTGTGTGGCGC
GGTGTGTGGGTAGTTGTCGGGAGGGATGTGTGTCGGTGGGTGCAAATGAA
ACAGCCGCGTGGCACGCACGCTTGTCTAGGCTCTTGGGAGGAGGGGAAGG
CATTCTACTGCAACTTGTGAACCACTACCATGGTAGTGTAGCAGCTGTTG
TTCAACTTGCGACAAATGGCCTGGAGTAGCATGAACCCAAGGCCCTAGTA
TGCAAGCCTTATCCAGAATATCCCCAAAATCTCGTCACAATATTTTTTGA
CAAGAAGGGAGGAGGAGTCAAAGTTTGTACTTCCCTTGGGGTCCGGGACT
CGTTCGGAATTGAGGCGGGATGTGCTTACAATATCTAACATGCTGGCCAG
ATTTCATACCATGCTGTGTTTCTGCTTGGCTTACATCGAAGGCCTTATAC
GTGGGTTGTTGACGATAAAGCAGATGGGATTTTCCAGGACTTTCGGATAG
CGCCTGCCTTGTCGAGGGCGCATGTACAACCCATCGGAAAAACAGACGCA
CGCACTGGTGTCACTTTTTTGCTTCCGACATTTTCTCCCCATTTAAAAAG
TACCTAAGACCACCGGAACATGTATATATGTGATTATTATTATGCTAAGC
TCGCATTTATCGTGGTGCTTTGGTCAGCATTTGTGATATTTAAGTTGCTG
CACGGGAATCCTCGTTTTGATTTTGGACCATATTGGGGCGGCGCGCGGAC
CAACTACCCATCCAAAGATTTAGGGGGTCTGTCGGTGTGGAAAGGGGAGC
CATCAAGATTCATACCAACAGTTCAACTGCCCTTGTGCATGTGGAACCCA
TTAATTTGGAATTAATAACCATACTTTTGATTTTCTAACTGGAGATGGTT
GGCGAAAGCGAGAGAAACAGCCTCGGGGAAGATGGGCCGGCGCCGGTCTG
CTAGTGACCACAATAAAGAATGGAGCCAAAAGCCACCAAAAGCATTGAAG
GAGACGAGTTTAAAACTTTAAATATCTAGTTACGCATTTCCTTATCTTAT
GTTCTGTATTTTTGAATGCGAGAGCCCCCGTCGGACAAATATTGGGCCTC
CGACAGCTATTTGGAAATGTTGGGGCTAATTAGTTGGACAATTGGTGGAG
TGGATAACTATATCTATTTGGATCTGTCATTGAAAGTAAATACC

protein sequence of NO04G03030.1

>NO04G03030.1-protein ID=NO04G03030.1-protein|Name=NO04G03030.1|organism=Nannochloropsis oceanica|type=polypeptide|length=194bp
MGTSFSTDHTPVHPQNVKCPIAVLRCKLFTRLIPAKSSDGRHVTSSAFSA
FSASSASSASSFASSSSSFSSSSSASASSWNSSSSSSSSSSSSVPPSPSA
SSFSYYCSSFFSSLHSSLYPSPSSSFSPSSPSPSFSPSSSFSPSSSCGCV
SVWRGVWVVVGRDVCRWVQMKQPRGTHACLGSWEEGKAFYCNL*

mRNA from alignment at chr4:811745..814738+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO04G03030.1 ID=NO04G03030.1|Name=NO04G03030.1|organism=Nannochloropsis oceanica|type=mRNA|length=2994bp|location=Sequence derived from alignment at chr4:811745..814738+ (Nannochloropsis oceanica)
AGATACTTGTTGTGCCCGGGCGCCATTCCACCATAGCGTCTTCTTGATAA
TCAAATCCACCACCCCCTCCAACCGACCCACCCAGCCCCCCATCAGCATC
AGTGAAGGACCCATTCAAGCTTCTTGGCATCGAGGAGGAAGGACCCGATG
GCGCTGATGTGGGCTACGGCTACCTGTGTGATGAACTTACTATAAACCCA
CGGAAAAGTGACCTGATCTGCAAGACATGCAGACCCGAATTTCTTGTGTT
GTGGCAGCAGCAGATGGATCCACGGCCGGGGAAGCCGCGGCAGTTGAACA
AGGGCACCCTCCGAACCCACATGAAAAATTAGAGTGCATGGCCTCCTCGT
AGGGGCTGCTAAGAATAGGAGGAAGAGGGCCGTGTACAATTCCTGAAGCC
GGTGGAGAAGTCACAGCAGCGGCACCAGCACCAGCAGCGACGGGGCGATA
GAGGGGGCGATTGTGATGATGATGACGAGGAGGACGACGAGGAAGACGAG
CAACAACAACAGCAGCAGCAATCATCACCATCAGCAACTTCTCTTGCAGC
TTTTTTTTCTCCTACTGACAACATTTCTTGGAAGCTCTGCAGAGGCATTT
CGACGACCGGCCCCGTTGAGTAGGGTTGTAGACCCCGACAGCTGGGGGCT
CCAAAACATATCTGCGAGACGTTCCTCTGTCTTACCCCAATACCTCCATA
TTCAACATTCGGTTGGTCCATTGCATCGAAATCTCCACCCAAGGATTTTA
CGCCAAAAAGCATGGATCTTCGAAGGATTGCCATGTGGTAGTGAGCAGGA
AGGAGGAGACCTGAGAGGCTTGTTTGGCTTTAAAGGATGAGGGGCAACTT
GAGAAAGACCTCAAAAAGCACAAAGAAGGATATGAGGGCGAAGGGAGTGG
AGGAGGAAGAAGGAGAGGGGAAAGAAGCAGAGGATGGTGTTGATGAGGAA
GATGCGGGGGAGTGAGTGGCAAAGGGGAGAATGAGCACTATTCCATCATA
ATTTCTCAATCTTAATTTTCTATAATTCGCATACTGCTGAAAGCTTTTGA
GGGTGCAAGAGTTTTGGACTCGGTTTGTTGTGTTTCGACTTCTAAGCATC
AGCATACTAGGCATTTCTGTCGTAGCTATCCTACAAACCTAGAACTATCA
TATGCAACCTCACGGCCTCTAGGAATTGCACAGAAGGGGAAGCCTTTCAA
CAATAAAATATTGCATATATTTCCCCTTATATTTTCCGAGTATTTGTAGC
GACTTTGACAGGTTTTACACCTAGCAAAGTCCCCGGACGGTCCAAACAGG
GCCAGGAGGAGGGGGGGGGGGGGGGAAGAGGAGGTCACAGGGGAGGCAAC
ACATAGAGTGTCCGCATATCCTGCCGCGGTTGACCATCATGGGGACGAGC
TTCTCCACGGACCATACTCCTGTACACCCTCAGAATGTTAAGTGCCCCAT
TGCCGTCCTGAGATGCAAACTGTTCACACGTCTCATACCAGCAAAGTCCT
CGGATGGCCGGCACGTAACCTCCTCCGCCTTCTCCGCCTTCTCTGCCTCC
TCCGCCTCCTCCGCCTCCTCATTCGCCTCGTCCTCCTCCTCTTTCTCTTC
CTCTTCCTCCGCCTCCGCCTCCTCCTGGAACTCCTCCTCCTCCTCCTCCT
CTTCCTCTTCCTCCTCCGTCCCTCCCTCCCCCTCTGCCTCCTCCTTCTCC
TACTATTGCTCCTCCTTCTTCTCTTCTCTCCACTCCTCCTTGTACCCTTC
CCCCTCCTCCTCCTTCTCTCCCTCCTCTCCCTCTCCCTCCTTCTCTCCCT
CCTCCTCCTTCTCTCCCTCCTCCTCCTGTGGGTGTGTGAGTGTGTGGCGC
GGTGTGTGGGTAGTTGTCGGGAGGGATGTGTGTCGGTGGGTGCAAATGAA
ACAGCCGCGTGGCACGCACGCTTGTCTAGGCTCTTGGGAGGAGGGGAAGG
CATTCTACTGCAACTTGTGAACCACTACCATGGTAGTGTAGCAGCTGTTG
TTCAACTTGCGACAAATGGCCTGGAGTAGCATGAACCCAAGGCCCTAGTA
TGCAAGCCTTATCCAGAATATCCCCAAAATCTCGTCACAATATTTTTTGA
CAAGAAGGGAGGAGGAGTCAAAGTTTGTACTTCCCTTGGGGTCCGGGACT
CGTTCGGAATTGAGGCGGGATGTGCTTACAATATCTAACATGCTGGCCAG
ATTTCATACCATGCTGTGTTTCTGCTTGGCTTACATCGAAGGCCTTATAC
GTGGGTTGTTGACGATAAAGCAGATGGGATTTTCCAGGACTTTCGGATAG
CGCCTGCCTTGTCGAGGGCGCATGTACAACCCATCGGAAAAACAGACGCA
CGCACTGGTGTCACTTTTTTGCTTCCGACATTTTCTCCCCATTTAAAAAG
TACCTAAGACCACCGGAACATGTATATATGTGATTATTATTATGCTAAGC
TCGCATTTATCGTGGTGCTTTGGTCAGCATTTGTGATATTTAAGTTGCTG
CACGGGAATCCTCGTTTTGATTTTGGACCATATTGGGGCGGCGCGCGGAC
CAACTACCCATCCAAAGATTTAGGGGGTCTGTCGGTGTGGAAAGGGGAGC
CATCAAGATTCATACCAACAGTTCAACTGCCCTTGTGCATGTGGAACCCA
TTAATTTGGAATTAATAACCATACTTTTGATTTTCTAACTGGAGATGGTT
GGCGAAAGCGAGAGAAACAGCCTCGGGGAAGATGGGCCGGCGCCGGTCTG
CTAGTGACCACAATAAAGAATGGAGCCAAAAGCCACCAAAAGCATTGAAG
GAGACGAGTTTAAAACTTTAAATATCTAGTTACGCATTTCCTTATCTTAT
GTTCTGTATTTTTGAATGCGAGAGCCCCCGTCGGACAAATATTGGGCCTC
CGACAGCTATTTGGAAATGTTGGGGCTAATTAGTTGGACAATTGGTGGAG
TGGATAACTATATCTATTTGGATCTGTCATTGAAAGTAAATACC

Coding sequence (CDS) from alignment at chr4:811745..814738+

>NO04G03030.1 ID=NO04G03030.1|Name=NO04G03030.1|organism=Nannochloropsis oceanica|type=CDS|length=582bp|location=Sequence derived from alignment at chr4:811745..814738+ (Nannochloropsis oceanica)
ATGGGGACGAGCTTCTCCACGGACCATACTCCTGTACACCCTCAGAATGT
TAAGTGCCCCATTGCCGTCCTGAGATGCAAACTGTTCACACGTCTCATAC
CAGCAAAGTCCTCGGATGGCCGGCACGTAACCTCCTCCGCCTTCTCCGCC
TTCTCTGCCTCCTCCGCCTCCTCCGCCTCCTCATTCGCCTCGTCCTCCTC
CTCTTTCTCTTCCTCTTCCTCCGCCTCCGCCTCCTCCTGGAACTCCTCCT
CCTCCTCCTCCTCTTCCTCTTCCTCCTCCGTCCCTCCCTCCCCCTCTGCC
TCCTCCTTCTCCTACTATTGCTCCTCCTTCTTCTCTTCTCTCCACTCCTC
CTTGTACCCTTCCCCCTCCTCCTCCTTCTCTCCCTCCTCTCCCTCTCCCT
CCTTCTCTCCCTCCTCCTCCTTCTCTCCCTCCTCCTCCTGTGGGTGTGTG
AGTGTGTGGCGCGGTGTGTGGGTAGTTGTCGGGAGGGATGTGTGTCGGTG
GGTGCAAATGAAACAGCCGCGTGGCACGCACGCTTGTCTAGGCTCTTGGG
AGGAGGGGAAGGCATTCTACTGCAACTTGTGA

Synonyms

Publications