NO04G03000.1, NO04G03000.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO04G03000.1
Unique NameNO04G03000.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1104
Alignment locationchr4:795344..796883 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:795344..796883 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO04G03000.1 vs.
Match: XP_005854978.1 (mitochondrial substrate carrier family protein [Nannochloropsis gaditana CCMP526]; EKU21389.1 mitochondrial substrate carrier family protein [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 481.1 bits (1237), Expect = 3.100e-132
Identity = 261/368 (70.92%), Postives = 290/368 (78.80%), Query Frame = 0
Query:    1 MTLDVSNLGQTEWQDLDVKKLLIISSFATVFENSIYWPMWAMKTRQQVQTGAVTQSLSIRSMGGIRSLYKGFLFYAVASLPAYLVYISTYTYAKSALGLHYDSSPANGFPAETVPEPSFQQTMAPMFAGFIADAACLALYIPVEIVAQRLQLPTRYSGVQQVLTDMWREDGVRTFYRGFGATLVTSGIASGVWWQSYESFKSLFTVLAREHIPPSK-PNPTPVPESAVLSPFSSTERMLEQVADVLATIRQSLPHMAAGLFAGGLSALATNPFDVAKTRLQTQHVKPGPLTYIRSLKTILQTEGLRQSFLRGLAPKLVSSAPLGMLSSVIYEGILFWSRKDSSEWKSYGASTETAEKKKKTTAGEKEM 368
            MT D+SNLGQT W+DLD+ KLLI S+ AT+ ENSI WPMWAMKTRQQVQTGAVT SLS+R MGG+RSLYKGFLFYA+ASLPAYL YI TYTY KSAL     S+P+   P ET  + SF  TMAPM AG +ADAACL LYIPVEIVAQRLQLPTRYSGVQQVLTDMWREDG+RTFYRGFGATLVTS IASGVWWQ+YES KS FT+      PP +  +P+  P S+  S   S E +L+QV ++ A IRQSLPHM AGLFAGGLSALATNP DVAKTRLQTQH KPGPLT+IRSL TI+Q EGL QSFLRG APKLVSSAPLGMLSSV+YEGILF SRKD+      G +T   E      AG+KEM
Sbjct:    1 MTFDISNLGQTTWEDLDMNKLLIFSTLATLVENSIMWPMWAMKTRQQVQTGAVTHSLSVRRMGGLRSLYKGFLFYAIASLPAYLTYIGTYTYTKSAL-----STPSADGPVET-SKGSFPLTMAPMAAGIMADAACLILYIPVEIVAQRLQLPTRYSGVQQVLTDMWREDGLRTFYRGFGATLVTSCIASGVWWQTYESLKSFFTMATTFPPPPLEIVSPSSAPTSSTSSSLFSVELVLDQVGELFAAIRQSLPHMIAGLFAGGLSALATNPLDVAKTRLQTQHTKPGPLTFIRSLNTIIQQEGLWQSFLRGFAPKLVSSAPLGMLSSVMYEGILFMSRKDN---PMLGGNTTGRE-----NAGDKEM 354          
The following BLAST results are available for this feature:
BLAST of NO04G03000.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005854978.13.100e-13270.92mitochondrial substrate carrier family protein [Na... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO04G03000NO04G03000Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO04G03000.1NO04G03000.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO04G03000.1.cds1NO04G03000.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G03000.1.cds2NO04G03000.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G03000.1.cds3NO04G03000.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO04G03000.1 ID=NO04G03000.1|Name=NO04G03000.1|organism=Nannochloropsis oceanica|type=mRNA|length=1104bp
ATGACCCTTGACGTTTCCAACCTGGGACAGACGGAGTGGCAAGATCTGGA
CGTGAAGAAGCTATTGATCATCTCCTCTTTTGCCACTGTATTCGAAAACT
CGATATATTGGCCTATGTGGGCGATGAAGACTCGGCAGCAAGTGCAGACC
GGGGCCGTCACTCAGTCCCTGAGCATTCGCAGCATGGGAGGTATCAGGTC
ACTCTACAAGGGCTTCCTCTTCTATGCCGTCGCGAGCCTCCCAGCCTATT
TAGTATATATCAGCACATACACCTACGCTAAGAGTGCTCTGGGCTTGCAT
TATGATTCCAGTCCTGCCAACGGCTTTCCTGCCGAAACGGTTCCTGAGCC
GTCCTTCCAGCAAACTATGGCTCCCATGTTTGCCGGGTTTATTGCGGACG
CGGCCTGCTTGGCTCTTTACATACCAGTGGAGATTGTAGCGCAGCGCTTG
CAACTTCCCACGCGATATTCGGGCGTGCAGCAGGTTCTGACAGACATGTG
GCGAGAAGACGGTGTGCGCACTTTCTACCGAGGTTTCGGGGCGACTCTTG
TTACCTCTGGCATTGCGTCTGGCGTCTGGTGGCAGAGTTATGAGTCCTTT
AAATCCCTATTTACCGTCCTGGCTCGCGAGCACATCCCCCCATCCAAACC
AAACCCTACACCCGTACCTGAATCTGCGGTCTTGTCTCCTTTCTCGTCGA
CAGAGCGCATGCTTGAGCAAGTCGCTGACGTTTTGGCAACGATCCGCCAG
TCCCTTCCTCACATGGCCGCCGGCTTGTTCGCCGGGGGATTGAGTGCCCT
GGCGACAAATCCTTTTGATGTGGCCAAGACGAGGCTGCAGACCCAGCATG
TGAAGCCTGGACCGTTGACTTATATTAGGAGCTTGAAGACCATTTTGCAA
ACAGAGGGGTTACGTCAATCTTTTTTGCGGGGCCTTGCGCCTAAGCTGGT
GTCAAGCGCACCGCTTGGGATGCTATCTTCCGTCATCTATGAGGGAATCT
TGTTTTGGAGTCGGAAAGACAGCAGCGAATGGAAAAGTTATGGTGCTAGC
ACCGAAACTGCCGAGAAGAAGAAGAAAACAACTGCGGGGGAGAAGGAGAT
GTAG
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protein sequence of NO04G03000.1

>NO04G03000.1-protein ID=NO04G03000.1-protein|Name=NO04G03000.1|organism=Nannochloropsis oceanica|type=polypeptide|length=368bp
MTLDVSNLGQTEWQDLDVKKLLIISSFATVFENSIYWPMWAMKTRQQVQT
GAVTQSLSIRSMGGIRSLYKGFLFYAVASLPAYLVYISTYTYAKSALGLH
YDSSPANGFPAETVPEPSFQQTMAPMFAGFIADAACLALYIPVEIVAQRL
QLPTRYSGVQQVLTDMWREDGVRTFYRGFGATLVTSGIASGVWWQSYESF
KSLFTVLAREHIPPSKPNPTPVPESAVLSPFSSTERMLEQVADVLATIRQ
SLPHMAAGLFAGGLSALATNPFDVAKTRLQTQHVKPGPLTYIRSLKTILQ
TEGLRQSFLRGLAPKLVSSAPLGMLSSVIYEGILFWSRKDSSEWKSYGAS
TETAEKKKKTTAGEKEM*
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mRNA from alignment at chr4:795344..796883+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO04G03000.1 ID=NO04G03000.1|Name=NO04G03000.1|organism=Nannochloropsis oceanica|type=mRNA|length=1540bp|location=Sequence derived from alignment at chr4:795344..796883+ (Nannochloropsis oceanica)
ATGACCCTTGACGTTTCCAACCTGGGACAGACGGAGTGGCAAGATCTGGA CGTGAAGAAGCTATTGATCATCTCCTCTTTTGCCACTGGTAAGTTTGCAC TTCATTCTCCAACGCATACACAAACATATGTACCAAAGGTGGGCACACGG CCTCTGTCGGGCTGTGGAGCCGGCAGGGAGCGTAGCATATCATTCGTATG TGTCGTGTGGCGAAGATTTGAAGATTTGTGCACCTGTAATTTCAAAGTGC ATACCTTGTTTGGGGGGAAGGCGCATCTTACCCATAGGTGACAGCAATGC CCACCCATAAATGAAATACTTGCCTATGTGCCCGAGTCTGATGTTGACCT TCTCGCCAACCCGCTTACCCAACTCAGTATTCGAAAACTCGATATATTGG CCTATGTGGGCGATGAAGACTCGGCAGCAAGTGCAGACCGGGGCCGTCAC TCAGTCCCTGAGCATTCGCAGCATGGGAGGTATCAGGTCACTCTACAAGG GCTTCCTCTTCTATGCCGTCGCGAGCCTCCCAGCCTATTTAGTATATATC AGCACATACACCTACGCTAAGAGTGCTCTGGGCTTGCATTATGATTCCAG TCCTGCCAACGGCTTTCCTGCCGAAACGGTTCCTGAGCCGTCCTTCCAGC AAACTATGGCTCCCATGTTTGCCGGGTTTATTGCGGACGCGGCCTGCTTG GCTCTTTACATACCAGTGGAGATTGTAGCGCAGCGCTTGCAACTTCCCAC GCGATATTCGGGCGTGCAGCAGGTTCTGACAGACATGTGGCGAGAAGACG GTAAGTGGAAAGAGGAAGTAAGGGCATACGGGGAAAGATGAAACAAGAGG GGACATTTCTGCGGTATGAGAGTTTCTCACAAGCAGTGATATTTAAACTC TGACCCCATATGCAACCGTCTCTGTCTCCCCCCGCACACTTTCGCAGGTG TGCGCACTTTCTACCGAGGTTTCGGGGCGACTCTTGTTACCTCTGGCATT GCGTCTGGCGTCTGGTGGCAGAGTTATGAGTCCTTTAAATCCCTATTTAC CGTCCTGGCTCGCGAGCACATCCCCCCATCCAAACCAAACCCTACACCCG TACCTGAATCTGCGGTCTTGTCTCCTTTCTCGTCGACAGAGCGCATGCTT GAGCAAGTCGCTGACGTTTTGGCAACGATCCGCCAGTCCCTTCCTCACAT GGCCGCCGGCTTGTTCGCCGGGGGATTGAGTGCCCTGGCGACAAATCCTT TTGATGTGGCCAAGACGAGGCTGCAGACCCAGCATGTGAAGCCTGGACCG TTGACTTATATTAGGAGCTTGAAGACCATTTTGCAAACAGAGGGGTTACG TCAATCTTTTTTGCGGGGCCTTGCGCCTAAGCTGGTGTCAAGCGCACCGC TTGGGATGCTATCTTCCGTCATCTATGAGGGAATCTTGTTTTGGAGTCGG AAAGACAGCAGCGAATGGAAAAGTTATGGTGCTAGCACCGAAACTGCCGA GAAGAAGAAGAAAACAACTGCGGGGGAGAAGGAGATGTAG
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Coding sequence (CDS) from alignment at chr4:795344..796883+

>NO04G03000.1 ID=NO04G03000.1|Name=NO04G03000.1|organism=Nannochloropsis oceanica|type=CDS|length=1104bp|location=Sequence derived from alignment at chr4:795344..796883+ (Nannochloropsis oceanica)
ATGACCCTTGACGTTTCCAACCTGGGACAGACGGAGTGGCAAGATCTGGA
CGTGAAGAAGCTATTGATCATCTCCTCTTTTGCCACTGTATTCGAAAACT
CGATATATTGGCCTATGTGGGCGATGAAGACTCGGCAGCAAGTGCAGACC
GGGGCCGTCACTCAGTCCCTGAGCATTCGCAGCATGGGAGGTATCAGGTC
ACTCTACAAGGGCTTCCTCTTCTATGCCGTCGCGAGCCTCCCAGCCTATT
TAGTATATATCAGCACATACACCTACGCTAAGAGTGCTCTGGGCTTGCAT
TATGATTCCAGTCCTGCCAACGGCTTTCCTGCCGAAACGGTTCCTGAGCC
GTCCTTCCAGCAAACTATGGCTCCCATGTTTGCCGGGTTTATTGCGGACG
CGGCCTGCTTGGCTCTTTACATACCAGTGGAGATTGTAGCGCAGCGCTTG
CAACTTCCCACGCGATATTCGGGCGTGCAGCAGGTTCTGACAGACATGTG
GCGAGAAGACGGTGTGCGCACTTTCTACCGAGGTTTCGGGGCGACTCTTG
TTACCTCTGGCATTGCGTCTGGCGTCTGGTGGCAGAGTTATGAGTCCTTT
AAATCCCTATTTACCGTCCTGGCTCGCGAGCACATCCCCCCATCCAAACC
AAACCCTACACCCGTACCTGAATCTGCGGTCTTGTCTCCTTTCTCGTCGA
CAGAGCGCATGCTTGAGCAAGTCGCTGACGTTTTGGCAACGATCCGCCAG
TCCCTTCCTCACATGGCCGCCGGCTTGTTCGCCGGGGGATTGAGTGCCCT
GGCGACAAATCCTTTTGATGTGGCCAAGACGAGGCTGCAGACCCAGCATG
TGAAGCCTGGACCGTTGACTTATATTAGGAGCTTGAAGACCATTTTGCAA
ACAGAGGGGTTACGTCAATCTTTTTTGCGGGGCCTTGCGCCTAAGCTGGT
GTCAAGCGCACCGCTTGGGATGCTATCTTCCGTCATCTATGAGGGAATCT
TGTTTTGGAGTCGGAAAGACAGCAGCGAATGGAAAAGTTATGGTGCTAGC
ACCGAAACTGCCGAGAAGAAGAAGAAAACAACTGCGGGGGAGAAGGAGAT
GTAG
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Synonyms
Publications