NO04G02960.1, NO04G02960.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO04G02960.1
Unique NameNO04G02960.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1649
Alignment locationchr4:787639..789827 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:787639..789827 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO04G02960.1 vs.
Match: EWM28665.1 (dna-directed rna polymerase i subunit [Nannochloropsis gaditana])

HSP 1 Score: 388.7 bits (997), Expect = 1.600e-104
Identity = 190/203 (93.60%), Postives = 197/203 (97.04%), Query Frame = 0 
Query:   82 MKFLTFATVVGTASAFLAPAPMHTRTQGRMYMADQAPVDEEMRSIALPFAAKPQNLNGELAGDVGFDPFKFTDKGDVAKFRVAELKHGRVAMLAVVGVFVQELYQWNDNFPSKNFLEALKTAPPLGLLQLFVFLGAYDVTTSKFDGRVPGDIGFDPLRLSADGLRENWQLAELKHGRLAMIAFLAFVVQASISDKPILEQTFE 285
            MKFL  AT+V TASAFLAP PMHTRTQGRMYMADQAPVDEE+RSIALPFAAKPQNLNGELAGDVGFDPFKF+DKGDVAKFRVAELKHGRVAMLAVVGV VQELYQWN+NFPSKNFLEALKTAP LGLLQLFVFLGAYDVTTSKF+GRVPGDIGFDPLRLSADGLRENWQ+AELKHGRLAMIAFLAFVVQASISDKPILEQTF+
Sbjct:    1 MKFLALATIVSTASAFLAPVPMHTRTQGRMYMADQAPVDEEVRSIALPFAAKPQNLNGELAGDVGFDPFKFSDKGDVAKFRVAELKHGRVAMLAVVGVLVQELYQWNENFPSKNFLEALKTAPALGLLQLFVFLGAYDVTTSKFEGRVPGDIGFDPLRLSADGLRENWQVAELKHGRLAMIAFLAFVVQASISDKPILEQTFD 203
The following BLAST results are available for this feature:
BLAST of NO04G02960.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28665.11.600e-10493.60dna-directed rna polymerase i subunit [Nannochloro... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO04G02960NO04G02960Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO04G02960.1NO04G02960.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO04G02960.1.cds1NO04G02960.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G02960.1.cds2NO04G02960.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G02960.1.cds3NO04G02960.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO04G02960.1 ID=NO04G02960.1|Name=NO04G02960.1|organism=Nannochloropsis oceanica|type=mRNA|length=1649bp
AAGCTCCCCTCCTTGCGTGCCGTCTTGCTTGCCTTAACCCTTCTGCAGAC
GCCCTAGACAAGAAATAAGAGGCCATCCAATAGATGATTACAGATAGTGG
AGACCCAAAATGCTGCACATGCGACCTTATTTGCCATTCGGGGCTGAGAA
TCGTGCGCAGCGTCGAAGCCTTTTTTCTGCCTCCCTCCTCTCCTTCCTTG
GATCACTTGCTTCCCATTCGCATGTCCTGCTTGCTGCTTCCCTCCCCCAG
CCACCCTCAAGTCAAGGACTTTACTTCCTTCTTCTCACATCCAACACAGG
TGCAACTCCCTCCTTCTTTCCCAAGCATGAAGTTCCTGACCTTTGCCACT
GTCGTGGGCACGGCCTCGGCCTTCCTGGCCCCTGCCCCCATGCACACCCG
CACCCAAGGCCGCATGTACATGGCCGACCAGGCCCCTGTCGATGAGGAAA
TGCGGTCCATCGCCCTGCCTTTTGCCGCCAAGCCCCAGAACTTGAACGGT
GAGCTGGCCGGAGATGTGGGCTTTGATCCGTTCAAGTTTACGGACAAGGG
TGATGTCGCCAAGTTCCGTGTGGCGGAGCTCAAGCACGGTCGTGTGGCTA
TGTTGGCGGTTGTGGGTGTGTTTGTGCAGGAGCTGTACCAGTGGAACGAC
AACTTTCCCTCCAAGAACTTCCTCGAGGCCCTCAAGACCGCCCCCCCCCT
GGGTCTCCTCCAGCTTTTCGTCTTCCTCGGCGCCTATGACGTAACCACCT
CCAAGTTCGATGGCCGCGTCCCGGGTGACATTGGCTTTGACCCCCTCCGT
TTGTCTGCTGATGGTCTCCGTGAGAACTGGCAGCTGGCTGAGCTCAAGCA
TGGCCGACTTGCCATGATTGCCTTCTTGGCCTTCGTCGTCCAGGCCTCCA
TCTCCGACAAGCCCATCCTCGAGCAGACTTTTGAGTGGGCCAAAAGCTTC
GCGTAGATGCTATACTTAACTAGCTAGCGCGGCAACAATAGATTCAAAAC
GCAGCGTTCCCGCCTTGCCCCCGCGGGAGGTCGGGCGACATCAACCATTC
GCACACACGCACGCACACACATCACCAACCAACAACGACAAGAAGCCGGA
GACTCGTCATTTCCAACAACAGCAAATTGTGGCATGAGTGAGCGAGAGTG
GCTGGCAAGGAGGAGGGCGAGGGGTGGTCAAGGAGACGAGGGAAGAGTTT
GACGTGATCCTTGGAAAGCCGCTGGCCACTCACACAAAACAGAAAAGGAA
AAGCAAAGCGCCTACTGGGTTTTATTGATTTTTTTTCTACACAGCGCATC
TGATATGATTGTCTTCACTTTGCTTTGCTTTTGCCTTGTACAAAATGTAC
ACGTCCTTCGCACTTCTCAAAACGCGGGCATAGGAGCCATGTCTGAAGTC
TCGCATCATCGCTCCCCCACCACTGCATCTCCTTTCTGGCCATTCCTGCT
TCTCATGGTTCGCGTAATGTCGCCGCAAGCCCTTTTCACGAGCGAAGACT
GACTCTGAGAGCAGTATGGAGAGTCGGAAGGTTTCTCGCTGCCAAAGATG
GTGCCATAGGCATTTTATCTCGTGTAAATATCACCTGAATTCTGACCTCC
CTGTCCCCCTGTCCCCTCCCCTCCATACCTCCCCGCACGCAACCACCAC
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protein sequence of NO04G02960.1

>NO04G02960.1-protein ID=NO04G02960.1-protein|Name=NO04G02960.1|organism=Nannochloropsis oceanica|type=polypeptide|length=291bp
MITDSGDPKCCTCDLICHSGLRIVRSVEAFFLPPSSPSLDHLLPIRMSCL
LLPSPSHPQVKDFTSFFSHPTQVQLPPSFPSMKFLTFATVVGTASAFLAP
APMHTRTQGRMYMADQAPVDEEMRSIALPFAAKPQNLNGELAGDVGFDPF
KFTDKGDVAKFRVAELKHGRVAMLAVVGVFVQELYQWNDNFPSKNFLEAL
KTAPPLGLLQLFVFLGAYDVTTSKFDGRVPGDIGFDPLRLSADGLRENWQ
LAELKHGRLAMIAFLAFVVQASISDKPILEQTFEWAKSFA*
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mRNA from alignment at chr4:787639..789827-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO04G02960.1 ID=NO04G02960.1|Name=NO04G02960.1|organism=Nannochloropsis oceanica|type=mRNA|length=2189bp|location=Sequence derived from alignment at chr4:787639..789827- (Nannochloropsis oceanica)
AAGCTCCCCTCCTTGCGTGCCGTCTTGCTTGCCTTAACCCTTCTGCAGAC
GCCCTAGACAAGAAATAAGAGGCCATCCAATAGATGATTACAGATAGTGG
AGACCCAAAATGCTGCACATGCGACCTTATTTGCCATTCGGGGCTGAGAA
TCGTGCGCAGCGTCGAAGCCTTTTTTCTGCCTCCCTCCTCTCCTTCCTTG
GATCACTTGCTTCCCATTCGCATGTCCTGCTTGCTGCTTCCCTCCCCCAG
CCACCCTCAAGTCAAGGACTTTACTTCCTTCTTCTCACATCCAACACAGG
TGCAACTCCCTCCTTCTTTCCCAAGCATGAAGTTCCTGACCTTTGCCACT
GTCGTGGGCACGGCCTCGGCCTTCCTGGCCCCTGCCCCCATGCACACCCG
CACCCAAGGCCGCGTAAGTAGTATACCGCTTGCTTAATATTGTATATTGA
TAGTACTTGATATAGGAGGGTACCTTATAGCTAAGCTGGCATTCTTCGCC
GGAGCAACCCACAAGCGCAGGAGGAAGGGGATGATGCAGTTGTCTGGATG
CGAGGCATGCTATCAACCACATGATGTATTGGTATATATCACGTGGTTCT
GTGCACTCAGAAAAGAGCATATGTTCAACGTATTTATCTCTCCTCCACTC
CAATCATGAACATGTTGGACTTACCCCCTCCTTTTCCACCTTTCTAATCC
TCCCCGCAGATGTACATGGCCGACCAGGCCCCTGTCGATGAGGAAATGCG
GTCCATCGCCCTGCCTTTTGCCGCCAAGCCCCAGAACTTGAACGGTGAGC
TGGCCGGAGATGTGGGCTTTGATCCGTTCAAGTTTACGGACAAGGGTGAT
GTCGCCAAGTTCCGTGTGGCGGAGCTCAAGCACGGTACGTTCTCGAGGAG
TGAAGAGGACAAAGCTGTCTGGATTGAAAGGATGGACCTCGGCAGTGTTC
ACCACTTGTCAGGTTTTCCTACTTCAGGATGGTAGTTATAATAACGACGT
GAATATAGGGAGGGGAGACCCTGCGCTTCGTTCCACCTCTTCTGCTCTCT
GTTCCGAGGCATAAAGATAGACCTTAAGAACACTTTTCTTCCTTCCTTCC
CTTTTTTTCCTTTTCTTTCAAATTATAGGTCGTGTGGCTATGTTGGCGGT
TGTGGGTGTGTTTGTGCAGGAGCTGTACCAGTGGAACGACAACTTTCCCT
CCAAGAACTTCCTCGAGGCCCTCAAGACCGCCCCCCCCCTGGGTCTCCTC
CAGCTTTTCGTCTTCCTCGGCGCCTATGACGTAACCACCTCCAAGTTCGA
TGGCCGCGTCCCGGGTGACATTGGCTTTGACCCCCTCCGTTTGTCTGCTG
ATGGTCTCCGTGAGAACTGGCAGCTGGCTGAGCTCAAGCATGGCCGACTT
GCCATGATTGCCTTCTTGGCCTTCGTCGTCCAGGCCTCCATCTCCGACAA
GCCCATCCTCGAGCAGACTTTTGAGTGGGCCAAAAGCTTCGCGTAGATGC
TATACTTAACTAGCTAGCGCGGCAACAATAGATTCAAAACGCAGCGTTCC
CGCCTTGCCCCCGCGGGAGGTCGGGCGACATCAACCATTCGCACACACGC
ACGCACACACATCACCAACCAACAACGACAAGAAGCCGGAGACTCGTCAT
TTCCAACAACAGCAAATTGTGGCATGAGTGAGCGAGAGTGGCTGGCAAGG
AGGAGGGCGAGGGGTGGTCAAGGAGACGAGGGAAGAGTTTGACGTGATCC
TTGGAAAGCCGCTGGCCACTCACACAAAACAGAAAAGGAAAAGCAAAGCG
CCTACTGGGTTTTATTGATTTTTTTTCTACACAGCGCATCTGATATGATT
GTCTTCACTTTGCTTTGCTTTTGCCTTGTACAAAATGTACACGTCCTTCG
CACTTCTCAAAACGCGGGCATAGGAGCCATGTCTGAAGTCTCGCATCATC
GCTCCCCCACCACTGCATCTCCTTTCTGGCCATTCCTGCTTCTCATGGTT
CGCGTAATGTCGCCGCAAGCCCTTTTCACGAGCGAAGACTGACTCTGAGA
GCAGTATGGAGAGTCGGAAGGTTTCTCGCTGCCAAAGATGGTGCCATAGG
CATTTTATCTCGTGTAAATATCACCTGAATTCTGACCTCCCTGTCCCCCT
GTCCCCTCCCCTCCATACCTCCCCGCACGCAACCACCAC
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Coding sequence (CDS) from alignment at chr4:787639..789827-

>NO04G02960.1 ID=NO04G02960.1|Name=NO04G02960.1|organism=Nannochloropsis oceanica|type=CDS|length=873bp|location=Sequence derived from alignment at chr4:787639..789827- (Nannochloropsis oceanica)
ATGATTACAGATAGTGGAGACCCAAAATGCTGCACATGCGACCTTATTTG
CCATTCGGGGCTGAGAATCGTGCGCAGCGTCGAAGCCTTTTTTCTGCCTC
CCTCCTCTCCTTCCTTGGATCACTTGCTTCCCATTCGCATGTCCTGCTTG
CTGCTTCCCTCCCCCAGCCACCCTCAAGTCAAGGACTTTACTTCCTTCTT
CTCACATCCAACACAGGTGCAACTCCCTCCTTCTTTCCCAAGCATGAAGT
TCCTGACCTTTGCCACTGTCGTGGGCACGGCCTCGGCCTTCCTGGCCCCT
GCCCCCATGCACACCCGCACCCAAGGCCGCATGTACATGGCCGACCAGGC
CCCTGTCGATGAGGAAATGCGGTCCATCGCCCTGCCTTTTGCCGCCAAGC
CCCAGAACTTGAACGGTGAGCTGGCCGGAGATGTGGGCTTTGATCCGTTC
AAGTTTACGGACAAGGGTGATGTCGCCAAGTTCCGTGTGGCGGAGCTCAA
GCACGGTCGTGTGGCTATGTTGGCGGTTGTGGGTGTGTTTGTGCAGGAGC
TGTACCAGTGGAACGACAACTTTCCCTCCAAGAACTTCCTCGAGGCCCTC
AAGACCGCCCCCCCCCTGGGTCTCCTCCAGCTTTTCGTCTTCCTCGGCGC
CTATGACGTAACCACCTCCAAGTTCGATGGCCGCGTCCCGGGTGACATTG
GCTTTGACCCCCTCCGTTTGTCTGCTGATGGTCTCCGTGAGAACTGGCAG
CTGGCTGAGCTCAAGCATGGCCGACTTGCCATGATTGCCTTCTTGGCCTT
CGTCGTCCAGGCCTCCATCTCCGACAAGCCCATCCTCGAGCAGACTTTTG
AGTGGGCCAAAAGCTTCGCGTAG
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Synonyms
Publications