NO04G02900.1, NO04G02900.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO04G02900.1
Unique NameNO04G02900.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1695
Alignment locationchr4:764076..766568 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:764076..766568 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO04G02900.1 vs.
Match: EWM28727.1 (Mitochondrial carrier domain protein [Nannochloropsis gaditana])

HSP 1 Score: 458.0 bits (1177), Expect = 3.600e-125
Identity = 224/275 (81.45%), Postives = 251/275 (91.27%), Query Frame = 0 
Query:  120 PSTSPPEPPEKSLLDIMRIIGKRALGGGIPGALAGGLQVATLMWLRTVGNYQYRYGSSFTETVATLYKQGGIGRFYEGMGFALVQGPLSRFGSTAANDGCRALLKNFESTRDLPIFFSTFVASIAAGAWRLVLMPIDTSKTVLQVEGNEGYRSLMRRISRGEFSAFYQGALATAAAAAFGHFPWFYVYGVLDEALRAPVGVLGKLCRNAFIGFMASAVSDALTNVIRVIKTTKQATASLSSISYMQTVQIILAADGWKGLFGRGLSTRILTNGLQ 395
            P  +PP P +K+++DI RI GKRALGGGIPGALAG +QV TLMWLRTVGNYQYRYG+SFTE VATLYKQGG+GRFYEG+GFAL+QGPLSRFGSTAANDGCRALLKNFE+TR LP+F  T +A++AAG+WR+ LMPIDT+KTVLQVEGNEGYRSLMRRI+RGE SAFYQG+LATAAAAA GHFPWFYVY +L+EA+RAP G LGKLCRNAFIGF+AS V+D LTNV+RV+KTTKQATASLSSISY QTVQIILAADGW GLFGRGLSTRILTNG Q
Sbjct:   63 PRRAPPPPSQKTIIDIFRIAGKRALGGGIPGALAGMMQVVTLMWLRTVGNYQYRYGTSFTEAVATLYKQGGVGRFYEGLGFALIQGPLSRFGSTAANDGCRALLKNFEATRGLPLFVPTAMAALAAGSWRIFLMPIDTAKTVLQVEGNEGYRSLMRRIARGELSAFYQGSLATAAAAALGHFPWFYVYTLLNEAIRAPAGWLGKLCRNAFIGFVASLVADTLTNVMRVVKTTKQATASLSSISYAQTVQIILAADGWHGLFGRGLSTRILTNGEQ 337
The following BLAST results are available for this feature:
BLAST of NO04G02900.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28727.13.600e-12581.45Mitochondrial carrier domain protein [Nannochlorop... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO04G02900NO04G02900Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO04G02900.1NO04G02900.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO04G02900.1.cds1NO04G02900.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G02900.1.cds2NO04G02900.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G02900.1.cds3NO04G02900.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G02900.1.cds4NO04G02900.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G02900.1.cds5NO04G02900.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G02900.1.cds6NO04G02900.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO04G02900.1 ID=NO04G02900.1|Name=NO04G02900.1|organism=Nannochloropsis oceanica|type=mRNA|length=1695bp
ACAGACACCACACAACGCAGGATTTGTACAGAGACTTGGAGTCGCGACTT
CACATGTCCGCTCCTTGCAGCACGCGGCGGCGGCTACTCGCTGGATCGTT
TGCGTTACTTCTGGTTTTGATGATGCTCGTCGCTCCTGTCGTAACTCAGG
CGGCGCCGAAGGAGAAGATGCCGGAAGGCGCTCCGGTTGCAGCAGAAGTG
ACAAATACAGAGGACGGCGGCGTCCTGCCCATACCATCCATGCAGGCAGA
AGCACCAGGAGCAGAACGACATCTCGAAGGAAGGCAGATAGAAGCAGAAG
AGCAATCACAAGATGGCATTCCGGTGGAGGAGGAACAGGCAGAAGAGGGG
GTAGAAAATGAGCTGGAGAAAGACGAGCATAACGCGGCAGTGGCAGCAGC
AGGAGGCGTACCATCAACCAGCCCACCGGAACCTCCCGAAAAATCGCTTT
TAGATATAATGCGAATCATCGGCAAGAGAGCTCTAGGTGGTGGCATCCCG
GGCGCCCTCGCCGGTGGCCTGCAAGTTGCCACCCTAATGTGGCTTCGCAC
CGTCGGAAACTACCAATATCGCTATGGGAGTTCGTTTACTGAGACAGTGG
CAACGTTGTACAAACAGGGAGGAATTGGGCGATTTTATGAAGGCATGGGT
TTTGCTCTTGTCCAGGGGCCCTTGTCGAGGTTTGGGAGCACGGCGGCGAA
TGACGGGTGTCGCGCTTTGTTGAAGAATTTTGAAAGCACCAGGGACCTCC
CTATCTTCTTCTCCACATTCGTCGCCTCCATCGCCGCGGGGGCCTGGCGT
CTAGTGCTCATGCCAATCGACACATCAAAAACTGTCCTTCAGGTAGAGGG
GAACGAAGGATACCGCTCCTTAATGCGTCGTATCTCCCGCGGAGAATTCT
CAGCGTTCTATCAGGGGGCACTCGCGACAGCGGCTGCGGCTGCTTTTGGA
CACTTCCCGTGGTTCTACGTGTACGGTGTGTTGGATGAGGCCTTGCGGGC
CCCCGTGGGGGTGTTGGGGAAGCTTTGCCGGAATGCGTTCATAGGATTTA
TGGCCTCTGCAGTCTCGGATGCTCTGACCAATGTGATACGGGTGATTAAA
ACGACTAAACAAGCCACGGCGAGTTTGAGCTCGATTTCGTACATGCAGAC
GGTCCAAATTATCCTAGCCGCGGATGGGTGGAAGGGATTGTTTGGAAGGG
GGCTATCGACAAGGATCCTGACGAATGGCTTACAATCCATCCTTTTCACC
GTCGTCTGGCGGGCCCTTTCCGAGTCCACCTACTTTAAAACAATGGTCGA
GCCGAACTACGAAGATGATGATGATGGCACCGGCACCAACAGTGAGAGGG
CAGCACAAGAAAGCACATTCTTGGAGCAACCCCTCCACAAACAACAACAG
CATCATCAGAAACCAAGGGGTCCCCTACGAGGCGCTGCAGGGCAGGCACA
AGCGGCCGAGAAGAAGAAGACGCACCAAGATTAATATCGTCGTTTAGACG
GCGCTTGTAACCATATAGAGCTCTGTTTTTAAAATGTACTCTTCAAATGC
ACTTCCAGTCATAGCGTTTTTTCCCAGAAATAGAAATAACAAACAAACGA
ATCAGCTTCACCTCCTCATCATATTTTATATGTGAACGACAGCAAAGCGT
CATCGCTGACCGTTCATCGCACCTCTCACATGCATGCCGCTGGCA
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protein sequence of NO04G02900.1

>NO04G02900.1-protein ID=NO04G02900.1-protein|Name=NO04G02900.1|organism=Nannochloropsis oceanica|type=polypeptide|length=477bp
MSAPCSTRRRLLAGSFALLLVLMMLVAPVVTQAAPKEKMPEGAPVAAEVT
NTEDGGVLPIPSMQAEAPGAERHLEGRQIEAEEQSQDGIPVEEEQAEEGV
ENELEKDEHNAAVAAAGGVPSTSPPEPPEKSLLDIMRIIGKRALGGGIPG
ALAGGLQVATLMWLRTVGNYQYRYGSSFTETVATLYKQGGIGRFYEGMGF
ALVQGPLSRFGSTAANDGCRALLKNFESTRDLPIFFSTFVASIAAGAWRL
VLMPIDTSKTVLQVEGNEGYRSLMRRISRGEFSAFYQGALATAAAAAFGH
FPWFYVYGVLDEALRAPVGVLGKLCRNAFIGFMASAVSDALTNVIRVIKT
TKQATASLSSISYMQTVQIILAADGWKGLFGRGLSTRILTNGLQSILFTV
VWRALSESTYFKTMVEPNYEDDDDGTGTNSERAAQESTFLEQPLHKQQQH
HQKPRGPLRGAAGQAQAAEKKKTHQD*
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mRNA from alignment at chr4:764076..766568+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO04G02900.1 ID=NO04G02900.1|Name=NO04G02900.1|organism=Nannochloropsis oceanica|type=mRNA|length=2493bp|location=Sequence derived from alignment at chr4:764076..766568+ (Nannochloropsis oceanica)
ACAGACACCACACAACGCAGGATTTGTACAGAGACTTGGAGTCGCGACTT
CACATGTCCGCTCCTTGCAGCACGCGGCGGCGGCTACTCGCTGGATCGTT
TGCGTTACTTCTGGTTTTGATGATGCTCGTCGCTCCTGTCGTAACTCAGG
TACGTGATCCATGAAGACAGGATGCACGCACGCTCACATTGGAGCGTGTT
AGCAAGGGGACAGCAGGTCCGACTGGGGGCTCATGTAACCAATACATCAC
ACAGGCGGCGCCGAAGGAGAAGATGCCGGAAGGCGCTCCGGTTGCAGCAG
AAGTGACAAATACAGAGGACGGCGGCGTCCTGCCCATACCATCCATGCAG
GCAGAAGCACCAGGAGCAGAACGACATCTCGAAGGAAGGCAGATAGAAGC
AGAAGAGCAATCACAAGATGGCATTCCGGTGGAGGAGGAACAGGCAGAAG
AGGGGGTAGAAAATGAGCTGGAGAAAGACGAGCATAACGCGGCAGTGGCA
GCAGCAGGAGGCGTACCATCAACCAGCCCACCGGAACCTCCCGAAAAATC
GCTTTTAGATATAATGCGAATCATCGGCAAGAGGTATGTGGAGGGGGGAG
GAAAGGAAGGTAGTCGGGGGACCATGTAGGGATGGTTGAAGAGAAGTCAC
AGACATATTAGATGCGGGTCGTTGAAAAGAGCGGGAAGCAGTTACCGAGA
GAAAGATGATGACAGGCGCCTCTAGAGTCCAAAAATGTTATGTAGGACTG
CACTCCCAATTATCCAATTCTAATCCCTCATCTCCTATCCTTCCATCTTG
CCAGAGCTCTAGGTGGTGGCATCCCGGGCGCCCTCGCCGGTGGCCTGCAA
GTTGCCACCCTAATGTGGCTTCGCACCGTCGGAAACTACCAATATCGCTA
TGGGAGTTCGTTTACTGAGACAGTGGCAACGTTGTACAAACAGGGAGGAA
TTGGGCGATTTTATGAAGGCATGGGTTTTGCTCTTGTCCAGGGGCCCTTG
TCGAGGTTTGGGAGCACGGCGGCGAATGACGGGTGTCGCGCTTTGTTGAA
GAATTTTGAAAGCACCAGGTATGTTTGTTGCTATTTCCGCTCCGGAGATG
TGTGAATGAGTGTGTGGCTGTGGCCATGAGAGCGATATTTCCCCGCTGCG
AACCATCTCCTTATTTCCTCACAAAGACCTCTCTCCCTCTTCTCTTATTT
ACATTAGCAATGCCATGTTTCAAATTAAAGAAACCTGACCCTCCCTCCCT
CCCTCTGTCTCTATCACAAAAATCAGGGACCTCCCTATCTTCTTCTCCAC
ATTCGTCGCCTCCATCGCCGCGGGGGCCTGGCGTCTAGTGCTCATGCCAA
TCGACACATCAAAAACTGTCCTTCAGGTAGAGGGGAACGAAGGATACCGC
TCCTTAATGCGTCGTATCTCCCGCGGAGAATTCTCAGCGTTCTATCAGGG
GGCACTCGCGACAGCGGCTGCGGCTGCTTTTGGACACTTCCCGTGGTTCT
ACGTGTACGGTGTGTTGGATGAGGCCTTGCGGGCCCCCGTGGGGGTGTTG
GGGAAGCTTTGCCGGAATGCGTTCATAGGATTTATGGCCTCTGCAGTCTC
GGATGCTCTGACCAATGTGATACGGGTGATTAAAACGACTAAACAAGCCA
CGGCGAGTTTGAGCTCGATTTCGTACATGCAGACGGTCCAAATTATCCTA
GCCGCGGATGGGTGGAAGGGATTGTTTGGAAGGGGGCTATCGACAAGGAT
CCTGACGAATGGTAGGGTTAGGGAGGGTGATGGAGGGAAACAGGGATGAA
AGATGTCGCATTGATAATTCCCGTCTTTTTCTTCCCCCGAATCATGCCTG
TATTGAGAGCTAACAACCCTTTTTTCTTATCTCTTCCCCTTCATCCAATT
TATACAACAGGCTTACAATCCATCCTTTTCACCGTCGTCTGGCGGGCCCT
TTCCGAGTCCACCTACTTTAAAACAATGGTCGAGCCGAACTACGAAGATG
ATGATGGTAGGTCCTTTGGTATTTCTCTATTTGCAAAGACTACATGGGGG
GAAAGCAAAATGATACATAAATGAAAAATACAAATAAAGACGAAACTTTA
TTTCTTACCTCCCACCTACAGATGGCACCGGCACCAACAGTGAGAGGGCA
GCACAAGAAAGCACATTCTTGGAGCAACCCCTCCACAAACAACAACAGCA
TCATCAGAAACCAAGGGGTCCCCTACGAGGCGCTGCAGGGCAGGCACAAG
CGGCCGAGAAGAAGAAGACGCACCAAGATTAATATCGTCGTTTAGACGGC
GCTTGTAACCATATAGAGCTCTGTTTTTAAAATGTACTCTTCAAATGCAC
TTCCAGTCATAGCGTTTTTTCCCAGAAATAGAAATAACAAACAAACGAAT
CAGCTTCACCTCCTCATCATATTTTATATGTGAACGACAGCAAAGCGTCA
TCGCTGACCGTTCATCGCACCTCTCACATGCATGCCGCTGGCA
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Coding sequence (CDS) from alignment at chr4:764076..766568+

>NO04G02900.1 ID=NO04G02900.1|Name=NO04G02900.1|organism=Nannochloropsis oceanica|type=CDS|length=1431bp|location=Sequence derived from alignment at chr4:764076..766568+ (Nannochloropsis oceanica)
ATGTCCGCTCCTTGCAGCACGCGGCGGCGGCTACTCGCTGGATCGTTTGC
GTTACTTCTGGTTTTGATGATGCTCGTCGCTCCTGTCGTAACTCAGGCGG
CGCCGAAGGAGAAGATGCCGGAAGGCGCTCCGGTTGCAGCAGAAGTGACA
AATACAGAGGACGGCGGCGTCCTGCCCATACCATCCATGCAGGCAGAAGC
ACCAGGAGCAGAACGACATCTCGAAGGAAGGCAGATAGAAGCAGAAGAGC
AATCACAAGATGGCATTCCGGTGGAGGAGGAACAGGCAGAAGAGGGGGTA
GAAAATGAGCTGGAGAAAGACGAGCATAACGCGGCAGTGGCAGCAGCAGG
AGGCGTACCATCAACCAGCCCACCGGAACCTCCCGAAAAATCGCTTTTAG
ATATAATGCGAATCATCGGCAAGAGAGCTCTAGGTGGTGGCATCCCGGGC
GCCCTCGCCGGTGGCCTGCAAGTTGCCACCCTAATGTGGCTTCGCACCGT
CGGAAACTACCAATATCGCTATGGGAGTTCGTTTACTGAGACAGTGGCAA
CGTTGTACAAACAGGGAGGAATTGGGCGATTTTATGAAGGCATGGGTTTT
GCTCTTGTCCAGGGGCCCTTGTCGAGGTTTGGGAGCACGGCGGCGAATGA
CGGGTGTCGCGCTTTGTTGAAGAATTTTGAAAGCACCAGGGACCTCCCTA
TCTTCTTCTCCACATTCGTCGCCTCCATCGCCGCGGGGGCCTGGCGTCTA
GTGCTCATGCCAATCGACACATCAAAAACTGTCCTTCAGGTAGAGGGGAA
CGAAGGATACCGCTCCTTAATGCGTCGTATCTCCCGCGGAGAATTCTCAG
CGTTCTATCAGGGGGCACTCGCGACAGCGGCTGCGGCTGCTTTTGGACAC
TTCCCGTGGTTCTACGTGTACGGTGTGTTGGATGAGGCCTTGCGGGCCCC
CGTGGGGGTGTTGGGGAAGCTTTGCCGGAATGCGTTCATAGGATTTATGG
CCTCTGCAGTCTCGGATGCTCTGACCAATGTGATACGGGTGATTAAAACG
ACTAAACAAGCCACGGCGAGTTTGAGCTCGATTTCGTACATGCAGACGGT
CCAAATTATCCTAGCCGCGGATGGGTGGAAGGGATTGTTTGGAAGGGGGC
TATCGACAAGGATCCTGACGAATGGCTTACAATCCATCCTTTTCACCGTC
GTCTGGCGGGCCCTTTCCGAGTCCACCTACTTTAAAACAATGGTCGAGCC
GAACTACGAAGATGATGATGATGGCACCGGCACCAACAGTGAGAGGGCAG
CACAAGAAAGCACATTCTTGGAGCAACCCCTCCACAAACAACAACAGCAT
CATCAGAAACCAAGGGGTCCCCTACGAGGCGCTGCAGGGCAGGCACAAGC
GGCCGAGAAGAAGAAGACGCACCAAGATTAA
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Synonyms
Publications