NO04G02890.1, NO04G02890.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO04G02890.1
Unique NameNO04G02890.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1984
Alignment locationchr4:761998..763981 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:761998..763981 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO04G02890.1 vs.
Match: EWM28793.1 (tom1 protein [Nannochloropsis gaditana])

HSP 1 Score: 424.1 bits (1089), Expect = 5.500e-115
Identity = 256/454 (56.39%), Postives = 313/454 (68.94%), Query Frame = 0 
Query:    1 MNFLGASNLSQSRSDLLTPVGQLIDQATSDSLLAPDWALNLAVCDAINYDNDGTSSTGEQAVRAFRRKLRDSNPKVVQLTLTLLEAAVKNADKPGRDSAFHALVGTSEFLSNVATLTDGKKGWDVKEQALSLIQEWGLSFQAKQATLAFYSTYMDLRLQGVQFPRLEASSPIFTPPAQTLSSSSSSPSPS---ITTTPTPEAELSTSATAAATG---AKEAAAAIKNKGIAELAKLGDDLREVRGRARACIELLPTSRGIAAGDEALAGVIGFLEACKPRLADVIEIGMEEGRVESGGEGG--VTEGVLELALEVHEEVVQALEAEKAHAMLRQKGGEEGERKAGLGEAAAVETGQTDDLLDFDQHPPPAQAQRPIPTHPDLTMTEVAVGEGRDHRAGKRGESSNVQLAPRDPLGLFDAVSSPAPPAARDAHVEPASGSPLPTSSLSGLRLDDN 447
            M +   S LSQSRSDLLTPVG+LID ATS++L+ PDW+LNLAVCDA+N D++     GEQA+RAFRRKLR++NPKV+QLTLTLLE  +KNAD+PGR+S FHALVG+ +FL+ +++LTDGK+GW+VKEQAL+L+Q+WGLSF++++ TLAFYSTYMDLRLQGVQFPRLEASSPIFTPPAQ        PSP+    +TTPT E  ++   T    G   +  +AA        +L KL  DL EVR RARAC  +L  S GI +GDEALA  +GFLEACK RL +VIE GM       GGE    +TE VLELALEVHEEVV+ L AEK+HA LR  GGE      G       ETG+TDDLLDFD HPPPA   RPIPTHPDLT T    GE      G+ G+ + V  +  DPL +F+     APPAAR   +  A    L  ++L+ L LDD+
Sbjct:    1 MEYFTNSKLSQSRSDLLTPVGRLIDDATSETLVTPDWSLNLAVCDAVNSDDE---FVGEQAMRAFRRKLREANPKVLQLTLTLLETVIKNADQPGRESRFHALVGSPDFLAKISSLTDGKRGWEVKEQALALLQQWGLSFESRRDTLAFYSTYMDLRLQGVQFPRLEASSPIFTPPAQ--------PSPATLPASTTPTSEGVVNAETTEIDRGVPASLPSAAPRARTADRDLTKLQQDLGEVRERARACFAMLSHSEGIESGDEALAEAVGFLEACKERLTEVIEAGM------GGGEESMTLTEAVLELALEVHEEVVEVLGAEKSHAELR--GGEGKGENEGAKREGRAETGRTDDLLDFDHHPPPAPMPRPIPTHPDLTATG---GENE----GQGGDGARVTQS-SDPLDIFE-----APPAARVCALGDAQS--LSPAALNALELDDD 420
The following BLAST results are available for this feature:
BLAST of NO04G02890.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28793.15.500e-11556.39tom1 protein [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO04G02890NO04G02890Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO04G02890.1NO04G02890.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO04G02890.1.cds1NO04G02890.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO04G02890.1 ID=NO04G02890.1|Name=NO04G02890.1|organism=Nannochloropsis oceanica|type=mRNA|length=1984bp
AGCCGCTCGCGCGAGGGGTAGCAAGTTGATGTTCTTCCTTCCCCATGTCC
GTCTCTCTTCCACTCCCCCACAATCGTTCTCCCCATTCCACCAACGTACA
CACAGTGAGCTTTTAATGACAAAGATGCTGTCCTCCCGCACTTTAACCCC
GCGGGTTTATTGCGCCACCGCCAACTTTGCCCTTGCTTCTTGACCTCCTC
CCTTGGATTCCTTCCATGATGCAAATTCTTGCGGCGTGTTACCTCTCTAG
CTGCTTGTCAATCACCTCGTTTGACTCTGAGAGGCCTTGCATGCTAAACA
TTAATTATGCTTCACATTTCTGAACTATTTCAACCAATGTACACCGCTCC
TGAGTCTCCGTTATACAAATCGTCGCCGCTGCATCACCGTCTCGAGATGA
CGCACTGATACCTGACACTCTCTAAACTTACCGCAACACAACACACGGAC
AGTTGTAGCTCTCAGCCCGGCAATGAACTTTCTCGGCGCCTCGAATCTCT
CTCAATCCCGCTCCGACCTGCTCACGCCCGTAGGCCAGCTCATTGATCAA
GCCACCTCTGACAGCTTACTAGCTCCAGATTGGGCGCTCAACCTGGCAGT
GTGTGATGCCATCAATTACGACAACGACGGGACATCGTCAACGGGGGAGC
AGGCCGTTCGTGCATTTCGCCGCAAGCTTCGGGACAGCAACCCCAAAGTG
GTGCAACTGACCCTAACCTTACTCGAGGCGGCGGTCAAGAACGCGGACAA
GCCCGGACGGGACTCGGCGTTCCATGCGTTGGTGGGCACGTCGGAGTTCT
TAAGCAATGTAGCCACATTAACGGACGGCAAAAAAGGATGGGACGTGAAG
GAGCAGGCTCTATCCTTGATCCAAGAGTGGGGGTTATCCTTTCAAGCCAA
GCAAGCTACCCTCGCCTTTTATTCCACCTACATGGACCTGAGACTACAGG
GGGTACAGTTTCCTCGTTTGGAAGCGTCATCGCCCATCTTCACTCCTCCG
GCCCAAACATTGTCCTCCTCGTCCTCCTCCCCCTCTCCCTCCATCACCAC
CACACCCACACCGGAAGCTGAACTATCTACATCAGCAACAGCAGCAGCAA
CAGGAGCAAAAGAAGCAGCAGCAGCAATTAAAAATAAAGGAATTGCAGAG
CTAGCAAAGCTTGGAGACGACCTTAGGGAAGTCCGAGGACGCGCCCGAGC
CTGCATTGAACTTTTACCTACCAGTAGAGGGATCGCTGCAGGTGACGAAG
CCTTGGCAGGAGTGATTGGGTTCCTTGAAGCATGCAAGCCCCGCTTGGCC
GATGTGATTGAAATAGGAATGGAAGAAGGACGGGTGGAGAGCGGGGGGGA
GGGCGGGGTGACGGAAGGGGTGTTGGAGTTGGCGCTGGAAGTGCACGAGG
AAGTCGTTCAGGCACTCGAGGCGGAAAAGGCCCATGCGATGCTTCGACAA
AAAGGAGGAGAGGAGGGAGAGCGGAAGGCAGGACTAGGAGAGGCAGCAGC
TGTTGAGACGGGACAGACGGACGATCTGCTTGACTTTGATCAACACCCAC
CGCCGGCACAAGCCCAACGGCCTATTCCCACTCATCCGGACCTGACAATG
ACGGAGGTGGCAGTTGGCGAAGGTCGAGATCACCGTGCAGGGAAACGCGG
GGAAAGCAGCAATGTACAATTAGCACCTCGTGATCCCTTGGGTTTGTTTG
ACGCGGTATCCTCTCCTGCTCCACCCGCTGCACGTGATGCGCATGTCGAG
CCTGCATCTGGAAGCCCCCTCCCAACATCCTCTTTGTCCGGCCTGCGTTT
GGACGACAATGTCCCACGAACCAAGTAGGCAAATAGGCCAAGGAGGAAAC
GAAAAGAAGGCAGGATTGATGGGATGTGAAGGTTACAGTTTTTGGTTGTG
GAAGAAAAATGTGACACAAGGTTTAATGTGAAAACAAATTTGAAGGAAAA
AAAAGATGAGAAAAGCGAGCGTTATCAAGAGCCG
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protein sequence of NO04G02890.1

>NO04G02890.1-protein ID=NO04G02890.1-protein|Name=NO04G02890.1|organism=Nannochloropsis oceanica|type=polypeptide|length=452bp
MNFLGASNLSQSRSDLLTPVGQLIDQATSDSLLAPDWALNLAVCDAINYD
NDGTSSTGEQAVRAFRRKLRDSNPKVVQLTLTLLEAAVKNADKPGRDSAF
HALVGTSEFLSNVATLTDGKKGWDVKEQALSLIQEWGLSFQAKQATLAFY
STYMDLRLQGVQFPRLEASSPIFTPPAQTLSSSSSSPSPSITTTPTPEAE
LSTSATAAATGAKEAAAAIKNKGIAELAKLGDDLREVRGRARACIELLPT
SRGIAAGDEALAGVIGFLEACKPRLADVIEIGMEEGRVESGGEGGVTEGV
LELALEVHEEVVQALEAEKAHAMLRQKGGEEGERKAGLGEAAAVETGQTD
DLLDFDQHPPPAQAQRPIPTHPDLTMTEVAVGEGRDHRAGKRGESSNVQL
APRDPLGLFDAVSSPAPPAARDAHVEPASGSPLPTSSLSGLRLDDNVPRT
K*
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mRNA from alignment at chr4:761998..763981+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO04G02890.1 ID=NO04G02890.1|Name=NO04G02890.1|organism=Nannochloropsis oceanica|type=mRNA|length=1984bp|location=Sequence derived from alignment at chr4:761998..763981+ (Nannochloropsis oceanica)
AGCCGCTCGCGCGAGGGGTAGCAAGTTGATGTTCTTCCTTCCCCATGTCC
GTCTCTCTTCCACTCCCCCACAATCGTTCTCCCCATTCCACCAACGTACA
CACAGTGAGCTTTTAATGACAAAGATGCTGTCCTCCCGCACTTTAACCCC
GCGGGTTTATTGCGCCACCGCCAACTTTGCCCTTGCTTCTTGACCTCCTC
CCTTGGATTCCTTCCATGATGCAAATTCTTGCGGCGTGTTACCTCTCTAG
CTGCTTGTCAATCACCTCGTTTGACTCTGAGAGGCCTTGCATGCTAAACA
TTAATTATGCTTCACATTTCTGAACTATTTCAACCAATGTACACCGCTCC
TGAGTCTCCGTTATACAAATCGTCGCCGCTGCATCACCGTCTCGAGATGA
CGCACTGATACCTGACACTCTCTAAACTTACCGCAACACAACACACGGAC
AGTTGTAGCTCTCAGCCCGGCAATGAACTTTCTCGGCGCCTCGAATCTCT
CTCAATCCCGCTCCGACCTGCTCACGCCCGTAGGCCAGCTCATTGATCAA
GCCACCTCTGACAGCTTACTAGCTCCAGATTGGGCGCTCAACCTGGCAGT
GTGTGATGCCATCAATTACGACAACGACGGGACATCGTCAACGGGGGAGC
AGGCCGTTCGTGCATTTCGCCGCAAGCTTCGGGACAGCAACCCCAAAGTG
GTGCAACTGACCCTAACCTTACTCGAGGCGGCGGTCAAGAACGCGGACAA
GCCCGGACGGGACTCGGCGTTCCATGCGTTGGTGGGCACGTCGGAGTTCT
TAAGCAATGTAGCCACATTAACGGACGGCAAAAAAGGATGGGACGTGAAG
GAGCAGGCTCTATCCTTGATCCAAGAGTGGGGGTTATCCTTTCAAGCCAA
GCAAGCTACCCTCGCCTTTTATTCCACCTACATGGACCTGAGACTACAGG
GGGTACAGTTTCCTCGTTTGGAAGCGTCATCGCCCATCTTCACTCCTCCG
GCCCAAACATTGTCCTCCTCGTCCTCCTCCCCCTCTCCCTCCATCACCAC
CACACCCACACCGGAAGCTGAACTATCTACATCAGCAACAGCAGCAGCAA
CAGGAGCAAAAGAAGCAGCAGCAGCAATTAAAAATAAAGGAATTGCAGAG
CTAGCAAAGCTTGGAGACGACCTTAGGGAAGTCCGAGGACGCGCCCGAGC
CTGCATTGAACTTTTACCTACCAGTAGAGGGATCGCTGCAGGTGACGAAG
CCTTGGCAGGAGTGATTGGGTTCCTTGAAGCATGCAAGCCCCGCTTGGCC
GATGTGATTGAAATAGGAATGGAAGAAGGACGGGTGGAGAGCGGGGGGGA
GGGCGGGGTGACGGAAGGGGTGTTGGAGTTGGCGCTGGAAGTGCACGAGG
AAGTCGTTCAGGCACTCGAGGCGGAAAAGGCCCATGCGATGCTTCGACAA
AAAGGAGGAGAGGAGGGAGAGCGGAAGGCAGGACTAGGAGAGGCAGCAGC
TGTTGAGACGGGACAGACGGACGATCTGCTTGACTTTGATCAACACCCAC
CGCCGGCACAAGCCCAACGGCCTATTCCCACTCATCCGGACCTGACAATG
ACGGAGGTGGCAGTTGGCGAAGGTCGAGATCACCGTGCAGGGAAACGCGG
GGAAAGCAGCAATGTACAATTAGCACCTCGTGATCCCTTGGGTTTGTTTG
ACGCGGTATCCTCTCCTGCTCCACCCGCTGCACGTGATGCGCATGTCGAG
CCTGCATCTGGAAGCCCCCTCCCAACATCCTCTTTGTCCGGCCTGCGTTT
GGACGACAATGTCCCACGAACCAAGTAGGCAAATAGGCCAAGGAGGAAAC
GAAAAGAAGGCAGGATTGATGGGATGTGAAGGTTACAGTTTTTGGTTGTG
GAAGAAAAATGTGACACAAGGTTTAATGTGAAAACAAATTTGAAGGAAAA
AAAAGATGAGAAAAGCGAGCGTTATCAAGAGCCG
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Coding sequence (CDS) from alignment at chr4:761998..763981+

>NO04G02890.1 ID=NO04G02890.1|Name=NO04G02890.1|organism=Nannochloropsis oceanica|type=CDS|length=1356bp|location=Sequence derived from alignment at chr4:761998..763981+ (Nannochloropsis oceanica)
ATGAACTTTCTCGGCGCCTCGAATCTCTCTCAATCCCGCTCCGACCTGCT
CACGCCCGTAGGCCAGCTCATTGATCAAGCCACCTCTGACAGCTTACTAG
CTCCAGATTGGGCGCTCAACCTGGCAGTGTGTGATGCCATCAATTACGAC
AACGACGGGACATCGTCAACGGGGGAGCAGGCCGTTCGTGCATTTCGCCG
CAAGCTTCGGGACAGCAACCCCAAAGTGGTGCAACTGACCCTAACCTTAC
TCGAGGCGGCGGTCAAGAACGCGGACAAGCCCGGACGGGACTCGGCGTTC
CATGCGTTGGTGGGCACGTCGGAGTTCTTAAGCAATGTAGCCACATTAAC
GGACGGCAAAAAAGGATGGGACGTGAAGGAGCAGGCTCTATCCTTGATCC
AAGAGTGGGGGTTATCCTTTCAAGCCAAGCAAGCTACCCTCGCCTTTTAT
TCCACCTACATGGACCTGAGACTACAGGGGGTACAGTTTCCTCGTTTGGA
AGCGTCATCGCCCATCTTCACTCCTCCGGCCCAAACATTGTCCTCCTCGT
CCTCCTCCCCCTCTCCCTCCATCACCACCACACCCACACCGGAAGCTGAA
CTATCTACATCAGCAACAGCAGCAGCAACAGGAGCAAAAGAAGCAGCAGC
AGCAATTAAAAATAAAGGAATTGCAGAGCTAGCAAAGCTTGGAGACGACC
TTAGGGAAGTCCGAGGACGCGCCCGAGCCTGCATTGAACTTTTACCTACC
AGTAGAGGGATCGCTGCAGGTGACGAAGCCTTGGCAGGAGTGATTGGGTT
CCTTGAAGCATGCAAGCCCCGCTTGGCCGATGTGATTGAAATAGGAATGG
AAGAAGGACGGGTGGAGAGCGGGGGGGAGGGCGGGGTGACGGAAGGGGTG
TTGGAGTTGGCGCTGGAAGTGCACGAGGAAGTCGTTCAGGCACTCGAGGC
GGAAAAGGCCCATGCGATGCTTCGACAAAAAGGAGGAGAGGAGGGAGAGC
GGAAGGCAGGACTAGGAGAGGCAGCAGCTGTTGAGACGGGACAGACGGAC
GATCTGCTTGACTTTGATCAACACCCACCGCCGGCACAAGCCCAACGGCC
TATTCCCACTCATCCGGACCTGACAATGACGGAGGTGGCAGTTGGCGAAG
GTCGAGATCACCGTGCAGGGAAACGCGGGGAAAGCAGCAATGTACAATTA
GCACCTCGTGATCCCTTGGGTTTGTTTGACGCGGTATCCTCTCCTGCTCC
ACCCGCTGCACGTGATGCGCATGTCGAGCCTGCATCTGGAAGCCCCCTCC
CAACATCCTCTTTGTCCGGCCTGCGTTTGGACGACAATGTCCCACGAACC
AAGTAG
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Synonyms
Publications