NO04G02880.2, NO04G02880.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO04G02880.2
Unique NameNO04G02880.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length5679
Alignment locationchr4:755627..761779 -

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:755627..761779 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO04G02880.2 vs.
Match: EWM28662.1 (Meiosis-specific DEAD-box helicase [Nannochloropsis gaditana])

HSP 1 Score: 1000.3 bits (2585), Expect = 6.100e-288
Identity = 508/685 (74.16%), Postives = 577/685 (84.23%), Query Frame = 0
Query:  109 PADRSASDNSYVGSSGRQ---QQLGFTVDLDREFGGEYRNLWPYRMLNSVQSSFWAVCLNTDRNVVIAAPTGVGKTMALEAAICRLLLESESVGDMHRKWRVVYIAPVKALCQQRLLDWRARFGSKFGLKCAELTGDSAGLREVAASHILFATPEKFDAVSRDWRENLYLLGSVRLVLIDEAHFLGEDPRGSALESLICRLKVIKTHKGIVEKGLPASKMRILAVSATLPNVDDLGTWLEAPTEAVFNFDYTFRPVPLDVHILSYANASNPFLFQRTLESRAIDVISKYSEGKATLVFCGSKKGAETLASKLADTTSMVMRGGGGRRGRGQDSGRQQQQYEKVERFTGLQNQKLKDLLVSCGGAVAFHHAGLSAEDRACVEDLFQQGVVRVLCSTSTLAQGINSPAFLAIILGTTFWRGAGIGYEDLPVSAVLQMIGRAGRPGFDDRGVAVIMTSKDKELAYTSMADGQEVVESQLPARFHEALNAEVCSHVISDLDGAMRWLQSTFLWVRAHRNPRHYAALLPRDNSSPEVDNSVGARLRAYMLRTLAELEAEEVLRLREPTI----SGSAIADLSAQNSKTVVPMVGGRVMSKTMVSFQTIKILKALPFDASLEELLYACSCCPEVSSPVRKAEKRSLNDLLKRVRFSKGIGIKRCTLPPHKAFVLVQACLGNLEITDFTLKL 787
            P   S  ++S +    R+   Q LGF VDLDRE GG++RNLWPYR+LN VQS+FW VC NTD NVVIAAPTGVGKTMALEAAICRLL E E  G+  + W+ VY+APVKALCQQRL+DW+ RF ++FGLKCAELTGDSAG+REVAAS I+  TPEKFDAVSRDWR+NLYLLGSVRLVLIDEAHFLGEDPRGSALE+LICRL+V+K+HK I++KGLPASK+RILA SATLPNV+D+G WLEAP EA FNFDYT RPVPL++H+L YANASNPFLFQRTLE RA +VI +YSEGKATLVFCGSKKGAE LA+KLA+  S +  G   + GRG   GR QQ+ E  ERF+ +QN KLKDLL++  GAVAFHHAGL+AEDR CVE LFQQGVVR LCSTSTLAQGINSPAFLAIILGTTFWRGAG GYEDLPVSAVLQMIGRAGRPG DDRGVAVIMTSK+KEL Y SMA+GQEVVESQLPARFHE+LNAEVCS+VISDL GA+RWL+STFLWVRAHRNP +Y ALLPR     + DNS+G  L+AYMLR LAEL+AE VLRL E T+     G+ I +L  +N   +VP+V GRVMSKT+VSF+TIK+L+A+P DASLE LLYAC  CPEV +PVRKAEKR LNDLLKRVRFSKG+GIK+CT P HKAFVLVQACLGNLEI DFTLK+
Sbjct:   16 PHTTSKLESSMISGPNREPYSQPLGFAVDLDRELGGKFRNLWPYRILNEVQSAFWPVCFNTDHNVVIAAPTGVGKTMALEAAICRLLQEDEGTGNGRKTWKAVYVAPVKALCQQRLVDWQRRFETRFGLKCAELTGDSAGMREVAASQIILTTPEKFDAVSRDWRDNLYLLGSVRLVLIDEAHFLGEDPRGSALEALICRLRVMKSHKVIMDKGLPASKLRILAASATLPNVEDIGRWLEAPPEATFNFDYTHRPVPLEIHVLGYANASNPFLFQRTLEGRAPEVIGRYSEGKATLVFCGSKKGAEALATKLAEAGSGLGLGNK-QLGRGGMQGRSQQRLE-AERFSNIQNHKLKDLLLTSDGAVAFHHAGLTAEDRTCVETLFQQGVVRTLCSTSTLAQGINSPAFLAIILGTTFWRGAGTGYEDLPVSAVLQMIGRAGRPGNDDRGVAVIMTSKEKELMYMSMAEGQEVVESQLPARFHESLNAEVCSNVISDLGGAIRWLRSTFLWVRAHRNPDYYTALLPRGTICRDADNSIGEYLKAYMLRILAELQAENVLRL-EKTVGLSRDGAPIDNLETEN---IVPLVAGRVMSKTLVSFETIKVLRAVPSDASLEALLYACCGCPEVCNPVRKAEKRPLNDLLKRVRFSKGLGIKKCTHPSHKAFVLVQACLGNLEIVDFTLKV 694          
The following BLAST results are available for this feature:
BLAST of NO04G02880.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28662.16.100e-28874.16Meiosis-specific DEAD-box helicase [Nannochloropsi... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO04G02880NO04G02880Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO04G02880.2NO04G02880.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO04G02880.2.cds1NO04G02880.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G02880.2.cds2NO04G02880.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G02880.2.cds3NO04G02880.2.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G02880.2.cds4NO04G02880.2.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO04G02880.2 ID=NO04G02880.2|Name=NO04G02880.2|organism=Nannochloropsis oceanica|type=mRNA|length=5679bp
CACCCTCACACCTCCACAGCATACGACCAAAAGCGGTATACCGAACAAGA
CCAATTGGGGCTTTAAACCACTAGTAGCGTCATTCAGTGCCATGTCTTCC
TCCACTTGCTGTACCGGCTCTTCCTCAGCGTCTCCTCTTCGTCCTCCTTC
GCCGCGATTCCCTCCTCGTTCTTCCTTCTCTGTCATGCTAGAGGAGGGAT
CGGACGAGGATGAGGGAAAAGAGGAGGAGAATCTCCATCTCAATCTTGCT
CCTTTCAATCATGCTACGGGCTACAAAGATGACGACGTATATGAGCAGCA
ACATCAGCAACAGCAGCAAGGTCGGCAGCGACAGCAACCGCCGCCCTTTT
GTCCTTCCTCCTCCTCTTCGCCCCCCTCTTCCTCCTCCTTCTCCTCCTCC
TCGACGGGCACGGCGCCTGCGGATCGTAGCGCCAGTGACAATAGTTATGT
TGGTAGTAGTGGTAGACAGCAGCAACTGGGGTTTACGGTAGATTTGGACC
GGGAGTTTGGAGGGGAATATCGCAATTTGTGGCCGTATCGCATGCTGAAC
TCGGTGCAGAGCTCTTTTTGGGCCGTGTGCTTAAATACTGATCGAAACGT
AGTTATTGCAGCGCCAACAGGCGTGGGCAAAACGATGGCGTTGGAAGCAG
CGATTTGTCGGTTGCTCCTAGAGAGTGAAAGTGTGGGAGATATGCACCGA
AAGTGGAGGGTGGTTTACATAGCGCCGGTTAAGGCTTTGTGTCAGCAGAG
GCTATTAGATTGGCGGGCTCGTTTCGGGTCAAAGTTTGGATTGAAATGCG
CAGAGTTGACGGGGGATTCGGCGGGCTTGAGGGAGGTGGCAGCGTCTCAC
ATTTTATTTGCTACACCAGAAAAATTCGATGCCGTATCGAGAGATTGGCG
TGAGAATCTTTATTTGCTTGGTTCGGTCCGGTTAGTGCTGATCGATGAAG
CACATTTTTTAGGTGAGGACCCACGTGGATCGGCGCTCGAATCTCTGATT
TGTAGGCTGAAGGTGATTAAGACTCATAAAGGGATAGTGGAGAAGGGACT
GCCTGCAAGCAAAATGCGAATTCTCGCAGTGTCTGCCACGTTGCCTAATG
TCGATGATTTGGGAACATGGTTGGAGGCTCCCACGGAGGCGGTGTTCAAT
TTCGACTATACCTTTAGACCTGTACCGCTTGATGTGCACATCCTGAGCTA
CGCCAACGCCAGTAACCCCTTTCTCTTCCAACGCACGTTGGAGAGTCGGG
CGATTGACGTGATCTCCAAGTACAGCGAGGGCAAGGCAACGCTTGTCTTT
TGTGGGTCGAAGAAGGGCGCGGAAACCTTGGCTAGCAAGCTTGCTGACAC
GACCTCGATGGTAATGAGGGGCGGAGGCGGAAGGCGAGGTCGAGGGCAGG
ATAGCGGGCGGCAGCAGCAGCAGTACGAGAAGGTTGAGCGTTTCACAGGG
TTGCAAAACCAGAAACTGAAAGACTTACTTGTGAGCTGCGGAGGTGCAGT
CGCATTCCACCACGCGGGTTTGAGCGCTGAGGATCGCGCGTGTGTCGAAG
ATTTGTTTCAACAAGGTGTGGTGCGCGTGCTTTGTTCTACTTCTACATTG
GCGCAGGGGATTAACAGTCCGGCGTTTCTGGCTATTATCCTGGGAACCAC
CTTTTGGCGGGGCGCTGGTATAGGGTACGAGGACCTGCCGGTCTCGGCGG
TGTTACAGATGATTGGGCGCGCCGGCCGGCCCGGTTTTGACGATCGAGGA
GTGGCTGTCATCATGACGAGCAAGGACAAGGAGCTCGCTTACACGTCCAT
GGCTGATGGTCAAGAAGTGGTCGAGTCCCAGCTTCCTGCCAGATTCCACG
AAGCACTGAATGCGGAAGTCTGCTCTCACGTTATCTCTGACTTGGACGGG
GCCATGCGATGGTTACAGTCAACCTTTTTGTGGGTCCGTGCACATCGCAA
TCCTCGCCATTATGCTGCCCTCCTTCCCCGCGACAACTCGAGTCCGGAAG
TAGATAACAGCGTAGGAGCTCGGTTGAGGGCTTACATGCTACGGACCTTA
GCAGAGCTAGAGGCTGAGGAGGTTTTGCGTTTAAGGGAGCCTACAATCAG
TGGGAGCGCGATCGCAGACTTGAGCGCGCAAAATTCGAAGACCGTGGTGC
CAATGGTGGGGGGGCGAGTAATGAGCAAAACGATGGTCAGCTTTCAGACA
ATTAAGATCTTGAAGGCGCTGCCCTTTGACGCTAGTTTAGAGGAGCTGCT
CTATGCTTGCAGCTGCTGTCCCGAGGTGAGCAGTCCTGTTCGTAAGGCCG
AAAAGCGTTCTCTAAACGATTTGCTTAAGCGCGTCCGCTTCTCCAAGGGA
ATCGGCATCAAGCGCTGCACCCTCCCGCCGCACAAAGCCTTCGTGTTGGT
CCAGGCCTGCCTTGGGAACCTGGAGATTACGGATTTCACATTAAAGCTTG
AGGCCGAGACCATCATGGACACCGTGTCACGTATCGTCCGAGCCAATCAG
CACTTTTGCGTCGACTCTGGTCGTGGCGGGGGCGCTTACCTAAGTTTGCT
GCTCGCTCGATCGTTGCGTGCACGCATGTGGGAGACAGAGCGTGACAAGT
TATTGCTCCGGCAGGTAGAGGGGATTGGTGTAGCGTTGTGTCATAAGCTC
GGCTTGGCTGGAATCAGCACGTTCCAGGATCTAGTAAATACGCTGCCTTC
CAAGATTGAAGCCGCTTGCCATCGTCGCCATCCGTGGGGGCTAGAGATGA
TTCACCTCGTCTCTGGGATTTTGAATAATTCTTTGAATATGCGCGTCTCG
CAGGTTGAAGGCAAGCCAGGGACGCGTGGTAACATGGCAACATTAGTGGT
GGAGCTGACACGTTCGACTTCGAGCAGTGGTGATGGGAGTAGCAATGATA
CGGAAGGACTCGAGTCCGGACTAATAGCGGGACAAGGACGCAAGAAGTGG
TGGTTGAATTCCACCATGGTTGCGTTTTCTTCGGGTCCGGATTGCAACCT
GCTGCTGTTTCGTGAGCTTTCTTTTCCGTCCCCGTTGCCTTCTTCTAAAT
CAGGGGAAGGAGAGGAGGAAATGGTGCACCGGATAGAGTTTACTGTGCCG
AGCCCTTTGAAGCAACAGAGCAGAGATGGAGGGGACAAACGCTTTTGCAT
CACGCTGGCTTTGATTTCGCCCTTTATCTCTCTCGATTGCTTGCAGATCT
TCTACCCGAGCTTTGCCGAGAACGGGGCAAAAGGTGGCGGTGCGAGTCAA
AGGAGGCTCTCAGAAACCAGAAGGATAGTGTCCACTCCGTCTTCTTCGTC
CTCTTCCTTATCATCGTCACGACACACCACTGCCAGTGTACACTCTACAA
TCGACGCAATAACGCCCGTCGCTGACAACAAGCACCAGCCTGCTAACGCC
CCGCCCAAGAAAGCCAAAGGGGGTATAGCTGCAGCTAATGTTTCTGCTGC
TGCGTCGACCCTCTCTACTGCTTCTGCCATCTCCGACGACAGACCCAACA
CTCTGCCGTCACATTTTCAGTACCAGTGTGAACGCCAGAAACAACGAGAG
CAAGAATTGCGGACGAGACGGGAGCAGGAACTTGCGGTGCGGAGGGAAGA
GTTGGCGCGTGAGCAGCGGCAGCGCCGACGACAGGAACAGCAGCAGGAAC
ATCAACAGCAGCAACAGCAGCAAGAAGGCGACAGGTGTACCCAGGATGAA
GCGTCAGCGGGAGTGGCAAAACTACAATGGCGAGCTCCGGAGCGAACAAT
GACGCAGCAGAAGCAACAAGAATTGACGAAAGAGTGGCACCTGCCGCAGG
AACAGAAGCGGCAGCATGAGGAATGGGCAAACATACATCGACAGCAGCAA
GCACAACAGCGACAGCGACAAGTCGATAATACATTGCGACTGTCGTGTAT
GGCCCCGCCGTCCACCTCTGGACGTCTGCCTGCGACAGCATCTATTACCG
CGCCAATCTGCCGAACCAATGATCTCTTCTCGAGTTTTCAATTTGCGCCA
TCGCAGCGGAGTCCCATCTTGGATCTGAACGAGAAAAACAGCAGCGGTGA
TAACCTATCCTCCTCAACATCCTCGATCGAATCCTTTCAACGTCGCTACC
CAGGGAGCAGCAGCATGGGCATCTTGACACCTCAGCCATTGCCTCCTCCC
CCTCTCGCGCACACCTTCCAGACGGCATCGTTGTCTGCGATGGATTCCAC
GGGAGAGGCGGAACTCAGCCTGTTGCACGCTAAGGTGAGGGAATCACGCG
CAGACCAAGTTCCAATTCACCGCATTCCCAAAGCTGCACCCACAAACCTG
GCCCCCGTCCTTATTACCGACACGAGCTCTCTCCCCTTTCTCAAGGTCGT
CGGTTCCTCCTCGCGTGTGGACACCATATCAGCAAGGGCACCAAGTGCAG
CAACCACCTCGAAATTCTTTGGCCGTACCTATACCAGCCCCTTTCGAGGA
AAGCAGCCGCAATCGTCTTCACCACCGCAGGTCGCAACGTCTTGCTTTGG
TGCCCTCTATCAATCGTGCAAAGCCCCTACTGAGCAAATGCAGCATCAAT
TGCAGCACGACCTTCTGCAGAGCAAGGTAAGGACCGATTGAACCGGTGTA
TATATATGTGGACTGGAGGTTATAGACATATTCTCCGGATAGCTCAAGAC
TACACTCCACTTTTGTAACAACCGGAAGTTCTCCATCAAATTTAATCTTT
TTCTTGCCAATTGAAACACAGCGAGTCCGCTGTCAAGATGACTTTTGCGG
TGGCCCTCAAGACGATGAGGACGAGAAAGATGATCTGACGCTGCCCTCGC
TGCCGACGCCGTACGGCTCGCCTCCTCTGAGCATGCCCCCGTCTAATCAC
TCTGACAAACGCCCGTTCAAGCGATGCGCGCCAATGTATAATCATCCTCT
TCCTTTATCTCCTTCAGCGTACTACCAAGGAGAGCAGCATTACTCCTACA
ACAACACCCCATCCCCTTCCCAGGCACTCGCGTTGACCTTCCAGCAAAAG
CCGCAGAAACACAATGGATGTCTCCAAGAAGCCTGTTATGGTGGCGATGG
TGCTGCCGCGGGTTATGGTGTGGAACAGCAATCTGCAGAACTACCATCGG
ACTCCTTTGATTCGGCGGGCTTCATTTGAGTGTGCGGATACTTTGTGTGT
GTGTGTGTGTGAATAATTTTAGGTAAGGATGGACGTGTACATCTTTGTGT
ATGTTTGAATTGCACAATAGCGTGATCGTGTGTGTGTGTGTGTGTGTGTG
TGTGTGTGTGTGTGTTGGTGCATGAGTATGCGGGAAATATTCGGAGTGCA
GACGCACCCAGAATCAAATATCTACCGGAATCAGAAGTCATGTATTTTGT
TCTATCATTAAATTCGCCTTGAACAATTGTCTGATACCATACATGACTTT
TAGAAGATATATGCACGAGTGATATAATGCAGGTAACGGACTGGGATCCC
GAGCAAAGGGGAAAACTAAAAGCAATACGGTCATAAATATATATACCTAT
AAATCTAGCTAGGACTTGATAAGACGGAAATACTCACTACCACTCTGATA
TTGCCATACATAGCATCACTGCCTTGTGGATGAGCATGCAGAATACCAGA
GGAGCATAAGTGCTCAACTGCTCGCATGGGAGAGGACACCGCATGTGTGA
GACAAAAAAGAAAATTACTTTCGATCAGA
back to top

protein sequence of NO04G02880.2

>NO04G02880.2-protein ID=NO04G02880.2-protein|Name=NO04G02880.2|organism=Nannochloropsis oceanica|type=polypeptide|length=1500bp
MSSSTCCTGSSSASPLRPPSPRFPPRSSFSVMLEEGSDEDEGKEEENLHL
NLAPFNHATGYKDDDVYEQQHQQQQQGRQRQQPPPFCPSSSSSPPSSSSF
SSSSTGTAPADRSASDNSYVGSSGRQQQLGFTVDLDREFGGEYRNLWPYR
MLNSVQSSFWAVCLNTDRNVVIAAPTGVGKTMALEAAICRLLLESESVGD
MHRKWRVVYIAPVKALCQQRLLDWRARFGSKFGLKCAELTGDSAGLREVA
ASHILFATPEKFDAVSRDWRENLYLLGSVRLVLIDEAHFLGEDPRGSALE
SLICRLKVIKTHKGIVEKGLPASKMRILAVSATLPNVDDLGTWLEAPTEA
VFNFDYTFRPVPLDVHILSYANASNPFLFQRTLESRAIDVISKYSEGKAT
LVFCGSKKGAETLASKLADTTSMVMRGGGGRRGRGQDSGRQQQQYEKVER
FTGLQNQKLKDLLVSCGGAVAFHHAGLSAEDRACVEDLFQQGVVRVLCST
STLAQGINSPAFLAIILGTTFWRGAGIGYEDLPVSAVLQMIGRAGRPGFD
DRGVAVIMTSKDKELAYTSMADGQEVVESQLPARFHEALNAEVCSHVISD
LDGAMRWLQSTFLWVRAHRNPRHYAALLPRDNSSPEVDNSVGARLRAYML
RTLAELEAEEVLRLREPTISGSAIADLSAQNSKTVVPMVGGRVMSKTMVS
FQTIKILKALPFDASLEELLYACSCCPEVSSPVRKAEKRSLNDLLKRVRF
SKGIGIKRCTLPPHKAFVLVQACLGNLEITDFTLKLEAETIMDTVSRIVR
ANQHFCVDSGRGGGAYLSLLLARSLRARMWETERDKLLLRQVEGIGVALC
HKLGLAGISTFQDLVNTLPSKIEAACHRRHPWGLEMIHLVSGILNNSLNM
RVSQVEGKPGTRGNMATLVVELTRSTSSSGDGSSNDTEGLESGLIAGQGR
KKWWLNSTMVAFSSGPDCNLLLFRELSFPSPLPSSKSGEGEEEMVHRIEF
TVPSPLKQQSRDGGDKRFCITLALISPFISLDCLQIFYPSFAENGAKGGG
ASQRRLSETRRIVSTPSSSSSSLSSSRHTTASVHSTIDAITPVADNKHQP
ANAPPKKAKGGIAAANVSAAASTLSTASAISDDRPNTLPSHFQYQCERQK
QREQELRTRREQELAVRREELAREQRQRRRQEQQQEHQQQQQQQEGDRCT
QDEASAGVAKLQWRAPERTMTQQKQQELTKEWHLPQEQKRQHEEWANIHR
QQQAQQRQRQVDNTLRLSCMAPPSTSGRLPATASITAPICRTNDLFSSFQ
FAPSQRSPILDLNEKNSSGDNLSSSTSSIESFQRRYPGSSSMGILTPQPL
PPPPLAHTFQTASLSAMDSTGEAELSLLHAKVRESRADQVPIHRIPKAAP
TNLAPVLITDTSSLPFLKVVGSSSRVDTISARAPSAATTSKFFGRTYTSP
FRGKQPQSSSPPQVATSCFGALYQSCKAPTEQMQHQLQHDLLQSKVRTD*
back to top

mRNA from alignment at chr4:755627..761779-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO04G02880.2 ID=NO04G02880.2|Name=NO04G02880.2|organism=Nannochloropsis oceanica|type=mRNA|length=6153bp|location=Sequence derived from alignment at chr4:755627..761779- (Nannochloropsis oceanica)
CACCCTCACACCTCCACAGCATACGACCAAAAGCGGTATACCGAACAAGA CCAATTGGGGCTTTAAACCACTAGTAGCGTCATTCAGTGCCATGTCTTCC TCCACTTGCTGTACCGGCTCTTCCTCAGCGTCTCCTCTTCGTCCTCCTTC GCCGCGATTCCCTCCTCGTTCTTCCTTCTCTGTCATGCTAGAGGAGGGAT CGGACGAGGATGAGGGAAAAGAGGAGGAGAATCTCCATCTCAATCTTGCT CCTTTCAATCATGCTACGGGCTACAAAGATGACGACGTATATGAGCAGCA ACATCAGCAACAGCAGCAAGGTCGGCAGCGACAGCAACCGCCGCCCTTTT GTCCTTCCTCCTCCTCTTCGCCCCCCTCTTCCTCCTCCTTCTCCTCCTCC TCGACGGGCACGGCGCCTGCGGATCGTAGCGCCAGTGACAATAGTTATGT TGGTAGTAGTGGTAGACAGCAGCAACTGGGGTTTACGGTAGATTTGGACC GGGAGTTTGGAGGGGAATATCGCAATTTGTGGCCGTATCGCATGCTGAAC TCGGTGCAGAGCTCTTTTTGGGCCGTGTGCTTAAATACTGATCGAAACGT AGTTATTGCAGCGCCAACAGGCGTGGGCAAAACGATGGCGTTGGAAGCAG CGATTTGTCGGTTGCTCCTAGAGAGTGAAAGTGTGGGAGATATGCACCGA AAGTGGAGGGTGGTTTACATAGCGCCGGTTAAGGCTTTGTGTCAGCAGAG GCTATTAGATTGGCGGGCTCGTTTCGGGTCAAAGTTTGGATTGAAATGCG CAGAGTTGACGGGGGATTCGGCGGGCTTGAGGGAGGTGGCAGCGTCTCAC ATTTTATTTGCTACACCAGAAAAATTCGATGCCGTATCGAGAGATTGGCG TGAGAATCTTTATTTGCTTGGTTCGGTCCGGTTAGTGCTGATCGATGAAG CACATTTTTTAGGTGAGGACCCACGTGGATCGGCGCTCGAATCTCTGATT TGTAGGCTGAAGGTGATTAAGACTCATAAAGGGATAGTGGAGAAGGGACT GCCTGCAAGCAAAATGCGAATTCTCGCAGTGTCTGCCACGTTGCCTAATG TCGATGATTTGGGAACATGGTTGGAGGCTCCCACGGAGGCGGTGTTCAAT TTCGACTATACCTTTAGACCTGTACCGCTTGATGTGTGAGTATTCTGAGT GGGGCATATATTTATTTGGATGGAGGGTGGCTTGTTATAACATTATGTGC AAGATAATGCAAAAGATCCAGTATCTCATCAATATTGACTCTTCCTCCCA CTTTCAGGCACATCCTGAGCTACGCCAACGCCAGTAACCCCTTTCTCTTC CAACGCACGTTGGAGAGTCGGGCGATTGACGTGATCTCCAAGTACAGCGA GGGCAAGGCAACGCTTGTCTTTTGTGGGTCGAAGAAGGGCGCGGAAACCT TGGCTAGCAAGCTTGCTGACACGACCTCGATGGTAATGAGGGGCGGAGGC GGAAGGCGAGGTCGAGGGCAGGATAGCGGGCGGCAGCAGCAGCAGTACGA GAAGGTTGAGCGTTTCACAGGGTTGCAAAACCAGAAACTGAAAGACTTAC TTGTGAGCTGCGGAGGTGCAGTCGCATTCCACCACGCGGGTTTGAGCGCT GAGGATCGCGCGTGTGTCGAAGATTTGTTTCAACAAGGTGTGGTGCGCGT GCTTTGTTCTACTTCTACATTGGCGCAGGGGATTAACAGTCCGGCGTTTC TGGCTATTATCCTGGGAACCACCTTTTGGCGGGGCGCTGGTATAGGGTAC GAGGACCTGCCGGTCTCGGCGGTGTTACAGATGATTGGGCGCGCCGGCCG GCCCGGTTTTGACGATCGAGGAGTGGCTGTCATCATGACGAGCAAGGACA AGGAGCTCGCTTACACGTCCATGGCTGATGGTCAAGAAGTGGTCGAGTCC CAGCTTCCTGCCAGATTCCACGAAGCACTGAATGCGGAAGTCTGCTCTCA CGTTATCTCTGACTTGGACGGGGCCATGCGATGGTTACAGTCAACCTTTT TGTGGGTCCGTGCACATCGCAATCCTCGCCATTATGCTGCCCTCCTTCCC CGCGACAACTCGAGTCCGGAAGTAGATAACAGCGTAGGAGCTCGGTTGAG GGCTTACATGCTACGGACCTTAGCAGAGCTAGAGGCTGAGGAGGTTTTGC GTTTAAGGGAGCCTACAATCAGTGGGAGCGCGATCGCAGACTTGAGCGCG CAAAATTCGAAGACCGTGGTGCCAATGGTGGGGGGGCGAGTAATGAGCAA AACGGTACGACACATGTCACTATGACTGAAACTCTTTCCCTTTTGTCTTT TTGGTGTTTTCCTACAAGTACTGTTAGGTTTCACTTTTTCTTTCTCCTAC TATGTCCCACCACCCCCTTCCCCCCTACAGATGGTCAGCTTTCAGACAAT TAAGATCTTGAAGGCGCTGCCCTTTGACGCTAGTTTAGAGGAGCTGCTCT ATGCTTGCAGCTGCTGTCCCGAGGTGAGCAGTCCTGTTCGTAAGGCCGAA AAGCGTTCTCTAAACGATTTGCTTAAGCGCGTCCGCTTCTCCAAGGGAAT CGGCATCAAGCGCTGCACCCTCCCGCCGCACAAAGCCTTCGTGTTGGTCC AGGCCTGCCTTGGGAACCTGGAGATTACGGATTTCACATTAAAGGTATGT TTGTCTTTGTGCGCGTCAGAAAAAGCGTACACTTGCTCGTACCGGTGCTC GTATAATTGACGAACGTATGTTGCTGAAGTTAGGATATACAAATCAGTAC CGAGCTCGATCTCTATTCAAATAGCACTCCAATCTAAACTACATTTGTCA GCGCCTTTTTAAATTGCCCCCTCGCTAATGCGCCCTCCCTCTCTCATACT CTACTCACGCTCCTTAAAAGCTTGAGGCCGAGACCATCATGGACACCGTG TCACGTATCGTCCGAGCCAATCAGCACTTTTGCGTCGACTCTGGTCGTGG CGGGGGCGCTTACCTAAGTTTGCTGCTCGCTCGATCGTTGCGTGCACGCA TGTGGGAGACAGAGCGTGACAAGTTATTGCTCCGGCAGGTAGAGGGGATT GGTGTAGCGTTGTGTCATAAGCTCGGCTTGGCTGGAATCAGCACGTTCCA GGATCTAGTAAATACGCTGCCTTCCAAGATTGAAGCCGCTTGCCATCGTC GCCATCCGTGGGGGCTAGAGATGATTCACCTCGTCTCTGGGATTTTGAAT AATTCTTTGAATATGCGCGTCTCGCAGGTTGAAGGCAAGCCAGGGACGCG TGGTAACATGGCAACATTAGTGGTGGAGCTGACACGTTCGACTTCGAGCA GTGGTGATGGGAGTAGCAATGATACGGAAGGACTCGAGTCCGGACTAATA GCGGGACAAGGACGCAAGAAGTGGTGGTTGAATTCCACCATGGTTGCGTT TTCTTCGGGTCCGGATTGCAACCTGCTGCTGTTTCGTGAGCTTTCTTTTC CGTCCCCGTTGCCTTCTTCTAAATCAGGGGAAGGAGAGGAGGAAATGGTG CACCGGATAGAGTTTACTGTGCCGAGCCCTTTGAAGCAACAGAGCAGAGA TGGAGGGGACAAACGCTTTTGCATCACGCTGGCTTTGATTTCGCCCTTTA TCTCTCTCGATTGCTTGCAGATCTTCTACCCGAGCTTTGCCGAGAACGGG GCAAAAGGTGGCGGTGCGAGTCAAAGGAGGCTCTCAGAAACCAGAAGGAT AGTGTCCACTCCGTCTTCTTCGTCCTCTTCCTTATCATCGTCACGACACA CCACTGCCAGTGTACACTCTACAATCGACGCAATAACGCCCGTCGCTGAC AACAAGCACCAGCCTGCTAACGCCCCGCCCAAGAAAGCCAAAGGGGGTAT AGCTGCAGCTAATGTTTCTGCTGCTGCGTCGACCCTCTCTACTGCTTCTG CCATCTCCGACGACAGACCCAACACTCTGCCGTCACATTTTCAGTACCAG TGTGAACGCCAGAAACAACGAGAGCAAGAATTGCGGACGAGACGGGAGCA GGAACTTGCGGTGCGGAGGGAAGAGTTGGCGCGTGAGCAGCGGCAGCGCC GACGACAGGAACAGCAGCAGGAACATCAACAGCAGCAACAGCAGCAAGAA GGCGACAGGTGTACCCAGGATGAAGCGTCAGCGGGAGTGGCAAAACTACA ATGGCGAGCTCCGGAGCGAACAATGACGCAGCAGAAGCAACAAGAATTGA CGAAAGAGTGGCACCTGCCGCAGGAACAGAAGCGGCAGCATGAGGAATGG GCAAACATACATCGACAGCAGCAAGCACAACAGCGACAGCGACAAGTCGA TAATACATTGCGACTGTCGTGTATGGCCCCGCCGTCCACCTCTGGACGTC TGCCTGCGACAGCATCTATTACCGCGCCAATCTGCCGAACCAATGATCTC TTCTCGAGTTTTCAATTTGCGCCATCGCAGCGGAGTCCCATCTTGGATCT GAACGAGAAAAACAGCAGCGGTGATAACCTATCCTCCTCAACATCCTCGA TCGAATCCTTTCAACGTCGCTACCCAGGGAGCAGCAGCATGGGCATCTTG ACACCTCAGCCATTGCCTCCTCCCCCTCTCGCGCACACCTTCCAGACGGC ATCGTTGTCTGCGATGGATTCCACGGGAGAGGCGGAACTCAGCCTGTTGC ACGCTAAGGTGAGGGAATCACGCGCAGACCAAGTTCCAATTCACCGCATT CCCAAAGCTGCACCCACAAACCTGGCCCCCGTCCTTATTACCGACACGAG CTCTCTCCCCTTTCTCAAGGTCGTCGGTTCCTCCTCGCGTGTGGACACCA TATCAGCAAGGGCACCAAGTGCAGCAACCACCTCGAAATTCTTTGGCCGT ACCTATACCAGCCCCTTTCGAGGAAAGCAGCCGCAATCGTCTTCACCACC GCAGGTCGCAACGTCTTGCTTTGGTGCCCTCTATCAATCGTGCAAAGCCC CTACTGAGCAAATGCAGCATCAATTGCAGCACGACCTTCTGCAGAGCAAG GTAAGGACCGATTGAACCGGTGTATATATATGTGGACTGGAGGTTATAGA CATATTCTCCGGATAGCTCAAGACTACACTCCACTTTTGTAACAACCGGA AGTTCTCCATCAAATTTAATCTTTTTCTTGCCAATTGAAACACAGCGAGT CCGCTGTCAAGATGACTTTTGCGGTGGCCCTCAAGACGATGAGGACGAGA AAGATGATCTGACGCTGCCCTCGCTGCCGACGCCGTACGGCTCGCCTCCT CTGAGCATGCCCCCGTCTAATCACTCTGACAAACGCCCGTTCAAGCGATG CGCGCCAATGTATAATCATCCTCTTCCTTTATCTCCTTCAGCGTACTACC AAGGAGAGCAGCATTACTCCTACAACAACACCCCATCCCCTTCCCAGGCA CTCGCGTTGACCTTCCAGCAAAAGCCGCAGAAACACAATGGATGTCTCCA AGAAGCCTGTTATGGTGGCGATGGTGCTGCCGCGGGTTATGGTGTGGAAC AGCAATCTGCAGAACTACCATCGGACTCCTTTGATTCGGCGGGCTTCATT TGAGTGTGCGGATACTTTGTGTGTGTGTGTGTGTGAATAATTTTAGGTAA GGATGGACGTGTACATCTTTGTGTATGTTTGAATTGCACAATAGCGTGAT CGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTGGTGCATGAG TATGCGGGAAATATTCGGAGTGCAGACGCACCCAGAATCAAATATCTACC GGAATCAGAAGTCATGTATTTTGTTCTATCATTAAATTCGCCTTGAACAA TTGTCTGATACCATACATGACTTTTAGAAGATATATGCACGAGTGATATA ATGCAGGTAACGGACTGGGATCCCGAGCAAAGGGGAAAACTAAAAGCAAT ACGGTCATAAATATATATACCTATAAATCTAGCTAGGACTTGATAAGACG GAAATACTCACTACCACTCTGATATTGCCATACATAGCATCACTGCCTTG TGGATGAGCATGCAGAATACCAGAGGAGCATAAGTGCTCAACTGCTCGCA TGGGAGAGGACACCGCATGTGTGAGACAAAAAAGAAAATTACTTTCGATC AGA
back to top

Coding sequence (CDS) from alignment at chr4:755627..761779-

>NO04G02880.2 ID=NO04G02880.2|Name=NO04G02880.2|organism=Nannochloropsis oceanica|type=CDS|length=4500bp|location=Sequence derived from alignment at chr4:755627..761779- (Nannochloropsis oceanica)
ATGTCTTCCTCCACTTGCTGTACCGGCTCTTCCTCAGCGTCTCCTCTTCG
TCCTCCTTCGCCGCGATTCCCTCCTCGTTCTTCCTTCTCTGTCATGCTAG
AGGAGGGATCGGACGAGGATGAGGGAAAAGAGGAGGAGAATCTCCATCTC
AATCTTGCTCCTTTCAATCATGCTACGGGCTACAAAGATGACGACGTATA
TGAGCAGCAACATCAGCAACAGCAGCAAGGTCGGCAGCGACAGCAACCGC
CGCCCTTTTGTCCTTCCTCCTCCTCTTCGCCCCCCTCTTCCTCCTCCTTC
TCCTCCTCCTCGACGGGCACGGCGCCTGCGGATCGTAGCGCCAGTGACAA
TAGTTATGTTGGTAGTAGTGGTAGACAGCAGCAACTGGGGTTTACGGTAG
ATTTGGACCGGGAGTTTGGAGGGGAATATCGCAATTTGTGGCCGTATCGC
ATGCTGAACTCGGTGCAGAGCTCTTTTTGGGCCGTGTGCTTAAATACTGA
TCGAAACGTAGTTATTGCAGCGCCAACAGGCGTGGGCAAAACGATGGCGT
TGGAAGCAGCGATTTGTCGGTTGCTCCTAGAGAGTGAAAGTGTGGGAGAT
ATGCACCGAAAGTGGAGGGTGGTTTACATAGCGCCGGTTAAGGCTTTGTG
TCAGCAGAGGCTATTAGATTGGCGGGCTCGTTTCGGGTCAAAGTTTGGAT
TGAAATGCGCAGAGTTGACGGGGGATTCGGCGGGCTTGAGGGAGGTGGCA
GCGTCTCACATTTTATTTGCTACACCAGAAAAATTCGATGCCGTATCGAG
AGATTGGCGTGAGAATCTTTATTTGCTTGGTTCGGTCCGGTTAGTGCTGA
TCGATGAAGCACATTTTTTAGGTGAGGACCCACGTGGATCGGCGCTCGAA
TCTCTGATTTGTAGGCTGAAGGTGATTAAGACTCATAAAGGGATAGTGGA
GAAGGGACTGCCTGCAAGCAAAATGCGAATTCTCGCAGTGTCTGCCACGT
TGCCTAATGTCGATGATTTGGGAACATGGTTGGAGGCTCCCACGGAGGCG
GTGTTCAATTTCGACTATACCTTTAGACCTGTACCGCTTGATGTGCACAT
CCTGAGCTACGCCAACGCCAGTAACCCCTTTCTCTTCCAACGCACGTTGG
AGAGTCGGGCGATTGACGTGATCTCCAAGTACAGCGAGGGCAAGGCAACG
CTTGTCTTTTGTGGGTCGAAGAAGGGCGCGGAAACCTTGGCTAGCAAGCT
TGCTGACACGACCTCGATGGTAATGAGGGGCGGAGGCGGAAGGCGAGGTC
GAGGGCAGGATAGCGGGCGGCAGCAGCAGCAGTACGAGAAGGTTGAGCGT
TTCACAGGGTTGCAAAACCAGAAACTGAAAGACTTACTTGTGAGCTGCGG
AGGTGCAGTCGCATTCCACCACGCGGGTTTGAGCGCTGAGGATCGCGCGT
GTGTCGAAGATTTGTTTCAACAAGGTGTGGTGCGCGTGCTTTGTTCTACT
TCTACATTGGCGCAGGGGATTAACAGTCCGGCGTTTCTGGCTATTATCCT
GGGAACCACCTTTTGGCGGGGCGCTGGTATAGGGTACGAGGACCTGCCGG
TCTCGGCGGTGTTACAGATGATTGGGCGCGCCGGCCGGCCCGGTTTTGAC
GATCGAGGAGTGGCTGTCATCATGACGAGCAAGGACAAGGAGCTCGCTTA
CACGTCCATGGCTGATGGTCAAGAAGTGGTCGAGTCCCAGCTTCCTGCCA
GATTCCACGAAGCACTGAATGCGGAAGTCTGCTCTCACGTTATCTCTGAC
TTGGACGGGGCCATGCGATGGTTACAGTCAACCTTTTTGTGGGTCCGTGC
ACATCGCAATCCTCGCCATTATGCTGCCCTCCTTCCCCGCGACAACTCGA
GTCCGGAAGTAGATAACAGCGTAGGAGCTCGGTTGAGGGCTTACATGCTA
CGGACCTTAGCAGAGCTAGAGGCTGAGGAGGTTTTGCGTTTAAGGGAGCC
TACAATCAGTGGGAGCGCGATCGCAGACTTGAGCGCGCAAAATTCGAAGA
CCGTGGTGCCAATGGTGGGGGGGCGAGTAATGAGCAAAACGATGGTCAGC
TTTCAGACAATTAAGATCTTGAAGGCGCTGCCCTTTGACGCTAGTTTAGA
GGAGCTGCTCTATGCTTGCAGCTGCTGTCCCGAGGTGAGCAGTCCTGTTC
GTAAGGCCGAAAAGCGTTCTCTAAACGATTTGCTTAAGCGCGTCCGCTTC
TCCAAGGGAATCGGCATCAAGCGCTGCACCCTCCCGCCGCACAAAGCCTT
CGTGTTGGTCCAGGCCTGCCTTGGGAACCTGGAGATTACGGATTTCACAT
TAAAGCTTGAGGCCGAGACCATCATGGACACCGTGTCACGTATCGTCCGA
GCCAATCAGCACTTTTGCGTCGACTCTGGTCGTGGCGGGGGCGCTTACCT
AAGTTTGCTGCTCGCTCGATCGTTGCGTGCACGCATGTGGGAGACAGAGC
GTGACAAGTTATTGCTCCGGCAGGTAGAGGGGATTGGTGTAGCGTTGTGT
CATAAGCTCGGCTTGGCTGGAATCAGCACGTTCCAGGATCTAGTAAATAC
GCTGCCTTCCAAGATTGAAGCCGCTTGCCATCGTCGCCATCCGTGGGGGC
TAGAGATGATTCACCTCGTCTCTGGGATTTTGAATAATTCTTTGAATATG
CGCGTCTCGCAGGTTGAAGGCAAGCCAGGGACGCGTGGTAACATGGCAAC
ATTAGTGGTGGAGCTGACACGTTCGACTTCGAGCAGTGGTGATGGGAGTA
GCAATGATACGGAAGGACTCGAGTCCGGACTAATAGCGGGACAAGGACGC
AAGAAGTGGTGGTTGAATTCCACCATGGTTGCGTTTTCTTCGGGTCCGGA
TTGCAACCTGCTGCTGTTTCGTGAGCTTTCTTTTCCGTCCCCGTTGCCTT
CTTCTAAATCAGGGGAAGGAGAGGAGGAAATGGTGCACCGGATAGAGTTT
ACTGTGCCGAGCCCTTTGAAGCAACAGAGCAGAGATGGAGGGGACAAACG
CTTTTGCATCACGCTGGCTTTGATTTCGCCCTTTATCTCTCTCGATTGCT
TGCAGATCTTCTACCCGAGCTTTGCCGAGAACGGGGCAAAAGGTGGCGGT
GCGAGTCAAAGGAGGCTCTCAGAAACCAGAAGGATAGTGTCCACTCCGTC
TTCTTCGTCCTCTTCCTTATCATCGTCACGACACACCACTGCCAGTGTAC
ACTCTACAATCGACGCAATAACGCCCGTCGCTGACAACAAGCACCAGCCT
GCTAACGCCCCGCCCAAGAAAGCCAAAGGGGGTATAGCTGCAGCTAATGT
TTCTGCTGCTGCGTCGACCCTCTCTACTGCTTCTGCCATCTCCGACGACA
GACCCAACACTCTGCCGTCACATTTTCAGTACCAGTGTGAACGCCAGAAA
CAACGAGAGCAAGAATTGCGGACGAGACGGGAGCAGGAACTTGCGGTGCG
GAGGGAAGAGTTGGCGCGTGAGCAGCGGCAGCGCCGACGACAGGAACAGC
AGCAGGAACATCAACAGCAGCAACAGCAGCAAGAAGGCGACAGGTGTACC
CAGGATGAAGCGTCAGCGGGAGTGGCAAAACTACAATGGCGAGCTCCGGA
GCGAACAATGACGCAGCAGAAGCAACAAGAATTGACGAAAGAGTGGCACC
TGCCGCAGGAACAGAAGCGGCAGCATGAGGAATGGGCAAACATACATCGA
CAGCAGCAAGCACAACAGCGACAGCGACAAGTCGATAATACATTGCGACT
GTCGTGTATGGCCCCGCCGTCCACCTCTGGACGTCTGCCTGCGACAGCAT
CTATTACCGCGCCAATCTGCCGAACCAATGATCTCTTCTCGAGTTTTCAA
TTTGCGCCATCGCAGCGGAGTCCCATCTTGGATCTGAACGAGAAAAACAG
CAGCGGTGATAACCTATCCTCCTCAACATCCTCGATCGAATCCTTTCAAC
GTCGCTACCCAGGGAGCAGCAGCATGGGCATCTTGACACCTCAGCCATTG
CCTCCTCCCCCTCTCGCGCACACCTTCCAGACGGCATCGTTGTCTGCGAT
GGATTCCACGGGAGAGGCGGAACTCAGCCTGTTGCACGCTAAGGTGAGGG
AATCACGCGCAGACCAAGTTCCAATTCACCGCATTCCCAAAGCTGCACCC
ACAAACCTGGCCCCCGTCCTTATTACCGACACGAGCTCTCTCCCCTTTCT
CAAGGTCGTCGGTTCCTCCTCGCGTGTGGACACCATATCAGCAAGGGCAC
CAAGTGCAGCAACCACCTCGAAATTCTTTGGCCGTACCTATACCAGCCCC
TTTCGAGGAAAGCAGCCGCAATCGTCTTCACCACCGCAGGTCGCAACGTC
TTGCTTTGGTGCCCTCTATCAATCGTGCAAAGCCCCTACTGAGCAAATGC
AGCATCAATTGCAGCACGACCTTCTGCAGAGCAAGGTAAGGACCGATTGA
back to top
Synonyms
Publications