NO04G02790.1, NO04G02790.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO04G02790.1
Unique NameNO04G02790.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1762
Alignment locationchr4:736996..738914 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:736996..738914 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO04G02790.1 vs.
Match: EWM28801.1 (Glycoside hydrolase-type carbohydrate-binding protein [Nannochloropsis gaditana])

HSP 1 Score: 499.6 bits (1285), Expect = 8.100e-138
Identity = 242/298 (81.21%), Postives = 270/298 (90.60%), Query Frame = 0 
Query:   52 MLKRSL-AFALVGVSVANAFFM-APAPRASATTMLAGKATLDTLDRVVLTDDATGHSATVHLHGGCITSYKAPHEVLGIRADAVFTGAKPIAGGLQICWPQFGPGAIQQHGFARNLPWEVSAQSMTEPEVTLVLKESAESRKIWDQAFELYLTVRLEGDHMLTRLTAKNTGKTPWDFTSALHSYYSVSDISKTTIIGTSLSGKTFVDKTQDPFVSAPLPASEMGITKFLEGVIPDYKGPMALHDKARRVRTTVEHVKGWNDYILWAPVGNDGMGYKSFVCVESGAVSKPVTVEGGSEW 348
            MLK +L A   V  S+++AF + A + R SAT ++AGKATLDTL RVVLTDD TGHSATVHLHGGC+TSYKAPHEVLGIR DA FTG KPIAGGLQICWPQFGPGAIQQHGFARNLPWEVSAQS +EPEVTLVLKESAE+RKIWDQAFEL LTVRLEGDH+LTRLTAKNTG TPW+FTSALHSYYSVSD++KTTIIG  L+G+TFVDKTQ+P VSAPL +SE+G+TKFLEGV+PDYKGPMALHDKA RVRTTVEHV+GW+DY+LWAPVGNDGMGYK FVC+ESGAVS+PV+V GGSEW
Sbjct:    1 MLKYALIAILAVMGSLSDAFLLPATSSRESATALMAGKATLDTLKRVVLTDDVTGHSATVHLHGGCVTSYKAPHEVLGIRKDAAFTGEKPIAGGLQICWPQFGPGAIQQHGFARNLPWEVSAQSDSEPEVTLVLKESAETRKIWDQAFELLLTVRLEGDHLLTRLTAKNTGSTPWEFTSALHSYYSVSDVAKTTIIGNDLAGRTFVDKTQNPHVSAPLQSSEVGVTKFLEGVVPDYKGPMALHDKAGRVRTTVEHVRGWSDYVLWAPVGNDGMGYKKFVCLESGAVSRPVSVAGGSEW 298
The following BLAST results are available for this feature:
BLAST of NO04G02790.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28801.18.100e-13881.21Glycoside hydrolase-type carbohydrate-binding prot... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO04G02790NO04G02790Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO04G02790.1NO04G02790.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO04G02790.1.cds1NO04G02790.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G02790.1.cds2NO04G02790.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO04G02790.1 ID=NO04G02790.1|Name=NO04G02790.1|organism=Nannochloropsis oceanica|type=mRNA|length=1762bp
CTGCGTGCTTTGGGATGGGGCGTGTGGGGCGTATGGGACTCACCTGCGAG
GCCTTGATTTTGCTTCTTTGGGAGGCGGGAGCTTGACCCCACGATTCGGT
ATGTCTTCAATGCCTGAGAGCACCAGGCGTAATTGCCGTTCCAACGAGGC
AGCCAGAACTGAGAGATCGCCTGCTGAGGCTCTCTCGCCTCGATTTCATG
CGCCGACGGCCTCCTCGCTTGGGCAGTCATGGCTGCATGAACAGCTCATT
GAAATTTTCAGGGCTTTTTTCGAACCACATGGCATGTGTGGCAAAAGAAT
GCCTTGAAGCCGCCAACAGGCGCCTGCGACGGAGCGTATGATTCAGCGAC
GATGCCGAGCCAAAACCCATGCATGTTGCAGTGCGCTTTCCAGTCCTCCA
CCCGCGAGAGGATTTTCAGCGCATTGAGTCAGTCATTCATGTAACAGATG
GTGTTTGTGTTCATCGAGGGAGTTCGGGTTCTTGCCTGGGGAAGTGCAGG
CAGGAGGTTGTTGGGTACGACAGGGCCAACACTCTTTCATGCCTATTTAC
TAGCCTGTCTTCTCCCTCAATACCCAACACAACCACAGGGTCCGGTTGCC
ATGCTCAAGCGCAGTCTCGCCTTTGCCCTGGTTGGCGTCAGCGTTGCCAA
TGCCTTCTTTATGGCTCCGGCTCCCCGCGCGTCCGCCACGACCATGTTGG
CTGGCAAAGCCACGCTCGACACGCTTGACCGTGTGGTCCTCACAGACGAC
GCCACGGGGCATTCCGCCACGGTTCATCTCCACGGCGGCTGTATCACCAG
CTACAAGGCCCCTCACGAGGTACTGGGCATTCGAGCGGACGCCGTCTTCA
CCGGGGCTAAGCCCATTGCCGGTGGCCTGCAAATTTGCTGGCCTCAGTTT
GGTCCCGGTGCCATCCAGCAACACGGATTCGCCCGCAACCTGCCCTGGGA
GGTGTCCGCACAGTCTATGACCGAGCCCGAGGTGACATTGGTTTTGAAAG
AATCGGCGGAATCTCGCAAGATTTGGGACCAGGCCTTCGAGCTTTATTTG
ACCGTCCGTCTGGAGGGCGACCACATGCTGACTCGGTTGACGGCCAAGAA
CACGGGGAAGACTCCATGGGATTTCACGAGCGCGTTGCACAGTTACTATA
GCGTGTCGGATATAAGCAAAACAACAATTATTGGCACTAGTTTGTCAGGA
AAAACTTTTGTAGACAAGACCCAGGACCCCTTTGTGTCTGCGCCGTTGCC
GGCATCGGAAATGGGAATAACGAAGTTTTTGGAAGGTGTCATTCCGGACT
ATAAAGGCCCCATGGCGCTGCATGACAAGGCGCGGCGAGTCCGCACGACG
GTGGAGCATGTGAAGGGATGGAATGATTATATTTTGTGGGCCCCGGTGGG
GAATGATGGCATGGGGTACAAGAGCTTTGTGTGCGTAGAGAGCGGGGCAG
TCTCCAAGCCGGTAACGGTCGAGGGTGGGTCGGAGTGGGTGGGGGAGATG
AAGATTAGTTCCAGGGCGGGCTGAATGCAGCTGGAACAGGAGTTGATTGA
GGGAAAGATATTGGTCTAGGAGTGGAGAGAGGACTGACGCTGATACTGGT
GGGAGTTTTTTTGCTGTAGGACCATGCCTCAGTATAGTAAAAAGGGAAAA
AGAGGTGGACCTCGCTTTTCATCATGCAACCTGTTTTGCTTCCAACATCT
GCAAGTCCAGTAGGAGCACAGGGTAAAAACGAGGACAACAAAAACGTGAT
AATCCGAAATCA
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protein sequence of NO04G02790.1

>NO04G02790.1-protein ID=NO04G02790.1-protein|Name=NO04G02790.1|organism=Nannochloropsis oceanica|type=polypeptide|length=359bp
MVFVFIEGVRVLAWGSAGRRLLGTTGPTLFHAYLLACLLPQYPTQPQGPV
AMLKRSLAFALVGVSVANAFFMAPAPRASATTMLAGKATLDTLDRVVLTD
DATGHSATVHLHGGCITSYKAPHEVLGIRADAVFTGAKPIAGGLQICWPQ
FGPGAIQQHGFARNLPWEVSAQSMTEPEVTLVLKESAESRKIWDQAFELY
LTVRLEGDHMLTRLTAKNTGKTPWDFTSALHSYYSVSDISKTTIIGTSLS
GKTFVDKTQDPFVSAPLPASEMGITKFLEGVIPDYKGPMALHDKARRVRT
TVEHVKGWNDYILWAPVGNDGMGYKSFVCVESGAVSKPVTVEGGSEWVGE
MKISSRAG*
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mRNA from alignment at chr4:736996..738914+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO04G02790.1 ID=NO04G02790.1|Name=NO04G02790.1|organism=Nannochloropsis oceanica|type=mRNA|length=1919bp|location=Sequence derived from alignment at chr4:736996..738914+ (Nannochloropsis oceanica)
CTGCGTGCTTTGGGATGGGGCGTGTGGGGCGTATGGGACTCACCTGCGAG
GCCTTGATTTTGCTTCTTTGGGAGGCGGGAGCTTGACCCCACGATTCGGT
ATGTCTTCAATGCCTGAGAGCACCAGGCGTAATTGCCGTTCCAACGAGGC
AGCCAGAACTGAGAGATCGCCTGCTGAGGCTCTCTCGCCTCGATTTCATG
CGCCGACGGCCTCCTCGCTTGGGCAGTCATGGCTGCATGAACAGCTCATT
GAAATTTTCAGGGCTTTTTTCGAACCACATGGCATGTGTGGCAAAAGAAT
GCCTTGAAGCCGCCAACAGGCGCCTGCGACGGAGCGTATGATTCAGCGAC
GATGCCGAGCCAAAACCCATGCATGTTGCAGTGCGCTTTCCAGTCCTCCA
CCCGCGAGAGGATTTTCAGCGCATTGAGTCAGTCATTCATGTAACAGATG
GTGTTTGTGTTCATCGAGGGAGTTCGGGTTCTTGCCTGGGGAAGTGCAGG
CAGGAGGTTGTTGGGTACGACAGGGCCAACACTCTTTCATGCCTATTTAC
TAGCCTGTCTTCTCCCTCAATACCCAACACAACCACAGGGTCCGGTTGCC
ATGCTCAAGCGCAGTCTCGCCTTTGCCCTGGTTGGCGTCAGCGTTGCCAA
TGCCTTCTTTATGGCTCCGGCTCCCCGCGCGTCCGCCACGACCATGTTGG
CTGGCAAAGCCACGCTCGACACGCTTGACCGTGTGGTCCTCACAGACGAC
GCCACGGGGCATTCCGCCACGGTTCATCTCCACGGCGGCTGTATCACCAG
CTACAAGGCCCCTCACGAGGTACTGGGCATTCGAGCGGACGCCGTCTTCA
CCGGGGCTAAGCCCATTGCCGGTGGCCTGCAAATTTGCTGGCCTCAGTTT
GGTCCCGGTGCCATCCAGGTACGATTCGATCTCCCTTGTGACGAGATATT
AGCTCCCTCTTTCACCTTTTCAGCCTCATCACACTGGCTCTGCTACTTTG
CTGTCCTCGTCTCTTTCCTGCCCATCAGCTCCACCCTCTCCACACCTATC
CCTCCTTCACTACCCCAACGCACAGCAACACGGATTCGCCCGCAACCTGC
CCTGGGAGGTGTCCGCACAGTCTATGACCGAGCCCGAGGTGACATTGGTT
TTGAAAGAATCGGCGGAATCTCGCAAGATTTGGGACCAGGCCTTCGAGCT
TTATTTGACCGTCCGTCTGGAGGGCGACCACATGCTGACTCGGTTGACGG
CCAAGAACACGGGGAAGACTCCATGGGATTTCACGAGCGCGTTGCACAGT
TACTATAGCGTGTCGGATATAAGCAAAACAACAATTATTGGCACTAGTTT
GTCAGGAAAAACTTTTGTAGACAAGACCCAGGACCCCTTTGTGTCTGCGC
CGTTGCCGGCATCGGAAATGGGAATAACGAAGTTTTTGGAAGGTGTCATT
CCGGACTATAAAGGCCCCATGGCGCTGCATGACAAGGCGCGGCGAGTCCG
CACGACGGTGGAGCATGTGAAGGGATGGAATGATTATATTTTGTGGGCCC
CGGTGGGGAATGATGGCATGGGGTACAAGAGCTTTGTGTGCGTAGAGAGC
GGGGCAGTCTCCAAGCCGGTAACGGTCGAGGGTGGGTCGGAGTGGGTGGG
GGAGATGAAGATTAGTTCCAGGGCGGGCTGAATGCAGCTGGAACAGGAGT
TGATTGAGGGAAAGATATTGGTCTAGGAGTGGAGAGAGGACTGACGCTGA
TACTGGTGGGAGTTTTTTTGCTGTAGGACCATGCCTCAGTATAGTAAAAA
GGGAAAAAGAGGTGGACCTCGCTTTTCATCATGCAACCTGTTTTGCTTCC
AACATCTGCAAGTCCAGTAGGAGCACAGGGTAAAAACGAGGACAACAAAA
ACGTGATAATCCGAAATCA
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Coding sequence (CDS) from alignment at chr4:736996..738914+

>NO04G02790.1 ID=NO04G02790.1|Name=NO04G02790.1|organism=Nannochloropsis oceanica|type=CDS|length=1077bp|location=Sequence derived from alignment at chr4:736996..738914+ (Nannochloropsis oceanica)
ATGGTGTTTGTGTTCATCGAGGGAGTTCGGGTTCTTGCCTGGGGAAGTGC
AGGCAGGAGGTTGTTGGGTACGACAGGGCCAACACTCTTTCATGCCTATT
TACTAGCCTGTCTTCTCCCTCAATACCCAACACAACCACAGGGTCCGGTT
GCCATGCTCAAGCGCAGTCTCGCCTTTGCCCTGGTTGGCGTCAGCGTTGC
CAATGCCTTCTTTATGGCTCCGGCTCCCCGCGCGTCCGCCACGACCATGT
TGGCTGGCAAAGCCACGCTCGACACGCTTGACCGTGTGGTCCTCACAGAC
GACGCCACGGGGCATTCCGCCACGGTTCATCTCCACGGCGGCTGTATCAC
CAGCTACAAGGCCCCTCACGAGGTACTGGGCATTCGAGCGGACGCCGTCT
TCACCGGGGCTAAGCCCATTGCCGGTGGCCTGCAAATTTGCTGGCCTCAG
TTTGGTCCCGGTGCCATCCAGCAACACGGATTCGCCCGCAACCTGCCCTG
GGAGGTGTCCGCACAGTCTATGACCGAGCCCGAGGTGACATTGGTTTTGA
AAGAATCGGCGGAATCTCGCAAGATTTGGGACCAGGCCTTCGAGCTTTAT
TTGACCGTCCGTCTGGAGGGCGACCACATGCTGACTCGGTTGACGGCCAA
GAACACGGGGAAGACTCCATGGGATTTCACGAGCGCGTTGCACAGTTACT
ATAGCGTGTCGGATATAAGCAAAACAACAATTATTGGCACTAGTTTGTCA
GGAAAAACTTTTGTAGACAAGACCCAGGACCCCTTTGTGTCTGCGCCGTT
GCCGGCATCGGAAATGGGAATAACGAAGTTTTTGGAAGGTGTCATTCCGG
ACTATAAAGGCCCCATGGCGCTGCATGACAAGGCGCGGCGAGTCCGCACG
ACGGTGGAGCATGTGAAGGGATGGAATGATTATATTTTGTGGGCCCCGGT
GGGGAATGATGGCATGGGGTACAAGAGCTTTGTGTGCGTAGAGAGCGGGG
CAGTCTCCAAGCCGGTAACGGTCGAGGGTGGGTCGGAGTGGGTGGGGGAG
ATGAAGATTAGTTCCAGGGCGGGCTGA
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Synonyms
Publications