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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr4 | genome | chr4:734574..736841 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO04G02780.1 vs.
Match: EWM28785.1 (hect e3 ubiquitin [Nannochloropsis gaditana]) HSP 1 Score: 1253.8 bits (3243), Expect = 0.000e+0 Identity = 627/764 (82.07%), Postives = 673/764 (88.09%), Query Frame = 0
Query: 1 MGQEQSAANHQHPQSLYPGAGGSPGGLHGGGRR-RPTSGMSPYQQPSPSSTFHSGGGGGGGRASRPVNTEPGAFDIPGQQRQAGQIRAQVRIPAGVRPGQHFAVLLEGQQVMVRCPDRASPGDLIAIEFQASTFIVQVPEGVHPGQTFDVMVRGVRQRVTCPEGVRPGMQIRFSLPPTTSGAA--GAGVPGVGSTGG-----STAGPPELSPFEKLYEVVVPQGVRPGEPFVLLADGQRVTVTCPVDARPNHKIRFKLPIVPTNEQLAAYEMKYNKDGWVRCLGVDVKFHWFKVDASNSNLIGNSAIGGGGAGGGR-RPKIGNFSFEDTAFVRSFRGPRSSPELVLVPPSEVAMDTTVEGTRLNFHTLSHGAQLPFDKKVEFFRQHCSSLKVPWEKGHMEIRVRRSQLLSDSLMAFERISKENMRKIFRFEFLGEPAIDAGGVAREWYDQVTDALFNPDFGLFQYSGVDQMCMQINAASGMVEAHHDRYFRFLGRLLGKALLDGQIVRHHLVRPVMKHILGWPVVLADLEYLDAETLQNLGKLQDMDPGVLGDLCLDFTVTENFLGQSETVELVPDGANKTLDADNLDAYLEANLKFRLCDRVKVQLRELLLGFYECVPEALLTIFDFQQLELLLCGMPNLDIADWMAQTEYGGEFSRQGAHHRVVQWFWEVVRDDFDQEQRARLLQFTTGTSGVPAQGFAFLQGNDGNIRKFTVNSISLEQSVFPRAHTCFNRIDLPLYKSKKDLKERLSLAIQMESSGFSIE 756
MGQ+QS +N Q+P S YPGAG S GG +G G R RPT +SP+QQP+ +S GGGR +R VNTEPGAF+IPG QR GQIRAQVRIPAGVRPGQHFAVLLEGQQVMVRCPDRASPGDLIAIEFQASTFIVQVPEGV PGQTFDVMVRG RQRVTCP+GVRPGMQIRFSLPP + G GAG PG GSTGG +T+GP SPFEKLYEVVVPQGVRPGEPFVLLADGQRVTVTCPVDARPN KIRFKLPIVPTNEQL AYEM+YNKDGWVRCLG DVKFHWF+VD SN G + GG GG RPK G FS E+TAFVR+F+GP SP+LVL+PPSEV++DTTV GTRLNFHTLSHGAQLPFDKK+EFFR+HC+SL+ PWE+GHMEIRVRR+ LL+DSLMAFE IS NMRKIFRFEFLGEP IDAGGVAREWYDQVTDALFNPDFGLFQYSGVDQMCMQI+ ASG+VE H RYFRFLGRLLGKALLDGQIVRHHLVRPV+KHILGWPVVLAD+EYLDAETLQNLGKLQ+MDP VLGDLCLDFTVTENFLGQS TVELVP GAN TL +NLD YLEANL+FRLCDRVK QLRELLLGFYEC+PEALL+IFDFQQLELLLCGMPNLDI DW+ T YGGEF+R GA HRVVQWFWEVVR+DFDQEQRARLLQFTTGTSGVPAQGFAFLQGNDGNIRKFT+NSISL+QSVFPRAHTCFNRIDLPLYK+KKDLKERLSLAIQMESSGFSIE
Sbjct: 1 MGQDQSISNQQYPSSSYPGAGRSSGGTNGPGNRPRPTPHVSPFQQPAYNSQ------PGGGRTTRTVNTEPGAFEIPGHQRSTGQIRAQVRIPAGVRPGQHFAVLLEGQQVMVRCPDRASPGDLIAIEFQASTFIVQVPEGVQPGQTFDVMVRGARQRVTCPDGVRPGMQIRFSLPPASDGGGLGGAGGPG-GSTGGGTGSSNTSGP---SPFEKLYEVVVPQGVRPGEPFVLLADGQRVTVTCPVDARPNQKIRFKLPIVPTNEQLQAYEMRYNKDGWVRCLGQDVKFHWFRVDGSNREQGGTANAVVGGVGGSLGRPKNGKFSIENTAFVRAFKGPPQSPDLVLLPPSEVSIDTTVPGTRLNFHTLSHGAQLPFDKKIEFFREHCNSLRTPWERGHMEIRVRRAHLLADSLMAFEGISTANMRKIFRFEFLGEPGIDAGGVAREWYDQVTDALFNPDFGLFQYSGVDQMCMQISGASGLVEPQHHRYFRFLGRLLGKALLDGQIVRHHLVRPVIKHILGWPVVLADMEYLDAETLQNLGKLQEMDPSVLGDLCLDFTVTENFLGQSHTVELVPGGANLTLGPENLDKYLEANLRFRLCDRVKTQLRELLLGFYECMPEALLSIFDFQQLELLLCGMPNLDIEDWLRNTGYGGEFARLGAQHRVVQWFWEVVRNDFDQEQRARLLQFTTGTSGVPAQGFAFLQGNDGNIRKFTINSISLDQSVFPRAHTCFNRIDLPLYKTKKDLKERLSLAIQMESSGFSIE 754
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO04G02780.1 ID=NO04G02780.1|Name=NO04G02780.1|organism=Nannochloropsis oceanica|type=mRNA|length=2268bp ATGGGACAAGAACAAAGCGCTGCCAACCACCAACATCCGCAATCGCTTTA TCCCGGCGCGGGCGGCTCCCCCGGAGGGCTTCATGGTGGCGGCAGGCGGA GACCGACCTCAGGCATGTCTCCCTACCAGCAGCCCTCGCCCTCCTCCACA TTCCATTCCGGTGGTGGCGGCGGCGGGGGTCGCGCATCCCGGCCCGTCAA CACCGAACCGGGAGCATTCGACATCCCTGGACAACAGCGACAAGCGGGTC AGATTCGGGCGCAAGTACGGATACCAGCAGGGGTGCGACCAGGGCAGCAT TTCGCGGTGCTTTTGGAAGGGCAGCAAGTGATGGTCCGCTGTCCTGATCG TGCTTCGCCGGGTGATCTGATTGCAATTGAATTTCAAGCGTCCACATTCA TTGTGCAAGTGCCTGAAGGAGTCCATCCAGGACAGACTTTTGATGTGATG GTGCGTGGGGTCAGGCAACGAGTCACTTGCCCAGAGGGCGTGCGGCCCGG GATGCAAATCCGCTTTTCCTTGCCTCCCACCACTAGTGGTGCTGCTGGTG CTGGTGTGCCAGGAGTAGGATCTACAGGAGGGTCTACTGCGGGGCCGCCG GAGCTGTCGCCATTTGAGAAGTTGTATGAGGTGGTTGTGCCTCAGGGGGT ACGGCCAGGTGAACCTTTTGTTTTGTTGGCGGACGGGCAACGCGTGACGG TGACGTGTCCGGTTGATGCGCGACCGAATCATAAAATTCGATTCAAGTTG CCCATCGTCCCGACGAATGAGCAGTTGGCGGCGTACGAGATGAAGTACAA CAAGGATGGGTGGGTGCGGTGTCTTGGGGTTGATGTCAAATTTCACTGGT TTAAGGTCGATGCTTCCAATAGCAACTTGATCGGGAACAGTGCTATCGGT GGGGGTGGGGCGGGTGGAGGAAGGAGGCCCAAGATTGGTAATTTCTCGTT TGAAGACACGGCATTCGTAAGGTCATTTAGGGGTCCTCGTTCCTCACCTG AGTTGGTGCTAGTCCCACCCTCGGAGGTGGCGATGGACACGACAGTGGAG GGGACGAGACTGAATTTCCATACATTGTCGCATGGGGCTCAATTACCGTT CGATAAGAAGGTAGAGTTTTTTAGGCAGCATTGCTCGAGCTTGAAGGTGC CCTGGGAGAAAGGGCATATGGAGATAAGGGTACGGAGGTCGCAATTGCTC TCGGATTCGTTGATGGCGTTTGAGAGGATCAGCAAGGAGAATATGCGGAA GATCTTTCGATTTGAGTTTTTGGGCGAGCCAGCGATTGATGCGGGGGGGG TGGCGAGGGAGTGGTATGACCAGGTCACTGATGCCTTGTTTAACCCTGAT TTTGGTTTGTTTCAGTACAGTGGGGTAGATCAGATGTGCATGCAGATAAA CGCAGCGAGTGGTATGGTGGAAGCGCACCATGATCGGTACTTCCGTTTTC TTGGGCGGTTGCTTGGAAAGGCTTTGTTGGACGGGCAAATTGTGCGGCAT CATTTGGTGAGACCCGTTATGAAGCACATCCTGGGGTGGCCGGTCGTGTT GGCGGACCTGGAATACCTCGATGCGGAGACCTTGCAAAATTTGGGTAAAT TACAAGATATGGACCCGGGCGTTTTGGGGGATCTATGCCTGGACTTTACT GTGACGGAGAACTTTCTGGGTCAGTCGGAAACGGTGGAGCTGGTCCCAGA CGGCGCGAACAAGACGTTGGACGCCGATAATCTCGATGCTTATCTGGAAG CCAACTTGAAGTTTCGGTTGTGTGATCGGGTGAAGGTACAATTGAGGGAG TTGCTGTTGGGATTTTATGAGTGTGTGCCCGAGGCTTTGTTGACGATTTT CGATTTTCAGCAGTTGGAGTTGTTGCTGTGCGGGATGCCGAATTTGGACA TCGCGGATTGGATGGCCCAAACAGAATACGGAGGGGAGTTCTCACGGCAA GGCGCGCATCATCGCGTGGTTCAATGGTTTTGGGAGGTGGTGAGGGATGA CTTTGATCAGGAGCAACGGGCGAGGTTATTACAGTTTACGACGGGCACTT CGGGGGTCCCGGCACAGGGGTTTGCGTTTTTGCAGGGGAATGATGGGAAC ATACGAAAATTTACGGTAAACAGTATTTCGTTGGAGCAATCCGTTTTCCC TCGGGCACATACCTGCTTTAATCGGATTGATTTGCCGTTATACAAATCGA AGAAGGATTTGAAGGAACGCCTGTCGCTGGCCATTCAGATGGAATCGTCG GGGTTTTCGATTGAGTGA back to topprotein sequence of NO04G02780.1 >NO04G02780.1-protein ID=NO04G02780.1-protein|Name=NO04G02780.1|organism=Nannochloropsis oceanica|type=polypeptide|length=756bp MGQEQSAANHQHPQSLYPGAGGSPGGLHGGGRRRPTSGMSPYQQPSPSST FHSGGGGGGGRASRPVNTEPGAFDIPGQQRQAGQIRAQVRIPAGVRPGQH FAVLLEGQQVMVRCPDRASPGDLIAIEFQASTFIVQVPEGVHPGQTFDVM VRGVRQRVTCPEGVRPGMQIRFSLPPTTSGAAGAGVPGVGSTGGSTAGPP ELSPFEKLYEVVVPQGVRPGEPFVLLADGQRVTVTCPVDARPNHKIRFKL PIVPTNEQLAAYEMKYNKDGWVRCLGVDVKFHWFKVDASNSNLIGNSAIG GGGAGGGRRPKIGNFSFEDTAFVRSFRGPRSSPELVLVPPSEVAMDTTVE GTRLNFHTLSHGAQLPFDKKVEFFRQHCSSLKVPWEKGHMEIRVRRSQLL SDSLMAFERISKENMRKIFRFEFLGEPAIDAGGVAREWYDQVTDALFNPD FGLFQYSGVDQMCMQINAASGMVEAHHDRYFRFLGRLLGKALLDGQIVRH HLVRPVMKHILGWPVVLADLEYLDAETLQNLGKLQDMDPGVLGDLCLDFT VTENFLGQSETVELVPDGANKTLDADNLDAYLEANLKFRLCDRVKVQLRE LLLGFYECVPEALLTIFDFQQLELLLCGMPNLDIADWMAQTEYGGEFSRQ GAHHRVVQWFWEVVRDDFDQEQRARLLQFTTGTSGVPAQGFAFLQGNDGN IRKFTVNSISLEQSVFPRAHTCFNRIDLPLYKSKKDLKERLSLAIQMESS GFSIE* back to topmRNA from alignment at chr4:734574..736841+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO04G02780.1 ID=NO04G02780.1|Name=NO04G02780.1|organism=Nannochloropsis oceanica|type=mRNA|length=2268bp|location=Sequence derived from alignment at chr4:734574..736841+ (Nannochloropsis oceanica) ATGGGACAAGAACAAAGCGCTGCCAACCACCAACATCCGCAATCGCTTTA
TCCCGGCGCGGGCGGCTCCCCCGGAGGGCTTCATGGTGGCGGCAGGCGGA
GACCGACCTCAGGCATGTCTCCCTACCAGCAGCCCTCGCCCTCCTCCACA
TTCCATTCCGGTGGTGGCGGCGGCGGGGGTCGCGCATCCCGGCCCGTCAA
CACCGAACCGGGAGCATTCGACATCCCTGGACAACAGCGACAAGCGGGTC
AGATTCGGGCGCAAGTACGGATACCAGCAGGGGTGCGACCAGGGCAGCAT
TTCGCGGTGCTTTTGGAAGGGCAGCAAGTGATGGTCCGCTGTCCTGATCG
TGCTTCGCCGGGTGATCTGATTGCAATTGAATTTCAAGCGTCCACATTCA
TTGTGCAAGTGCCTGAAGGAGTCCATCCAGGACAGACTTTTGATGTGATG
GTGCGTGGGGTCAGGCAACGAGTCACTTGCCCAGAGGGCGTGCGGCCCGG
GATGCAAATCCGCTTTTCCTTGCCTCCCACCACTAGTGGTGCTGCTGGTG
CTGGTGTGCCAGGAGTAGGATCTACAGGAGGGTCTACTGCGGGGCCGCCG
GAGCTGTCGCCATTTGAGAAGTTGTATGAGGTGGTTGTGCCTCAGGGGGT
ACGGCCAGGTGAACCTTTTGTTTTGTTGGCGGACGGGCAACGCGTGACGG
TGACGTGTCCGGTTGATGCGCGACCGAATCATAAAATTCGATTCAAGTTG
CCCATCGTCCCGACGAATGAGCAGTTGGCGGCGTACGAGATGAAGTACAA
CAAGGATGGGTGGGTGCGGTGTCTTGGGGTTGATGTCAAATTTCACTGGT
TTAAGGTCGATGCTTCCAATAGCAACTTGATCGGGAACAGTGCTATCGGT
GGGGGTGGGGCGGGTGGAGGAAGGAGGCCCAAGATTGGTAATTTCTCGTT
TGAAGACACGGCATTCGTAAGGTCATTTAGGGGTCCTCGTTCCTCACCTG
AGTTGGTGCTAGTCCCACCCTCGGAGGTGGCGATGGACACGACAGTGGAG
GGGACGAGACTGAATTTCCATACATTGTCGCATGGGGCTCAATTACCGTT
CGATAAGAAGGTAGAGTTTTTTAGGCAGCATTGCTCGAGCTTGAAGGTGC
CCTGGGAGAAAGGGCATATGGAGATAAGGGTACGGAGGTCGCAATTGCTC
TCGGATTCGTTGATGGCGTTTGAGAGGATCAGCAAGGAGAATATGCGGAA
GATCTTTCGATTTGAGTTTTTGGGCGAGCCAGCGATTGATGCGGGGGGGG
TGGCGAGGGAGTGGTATGACCAGGTCACTGATGCCTTGTTTAACCCTGAT
TTTGGTTTGTTTCAGTACAGTGGGGTAGATCAGATGTGCATGCAGATAAA
CGCAGCGAGTGGTATGGTGGAAGCGCACCATGATCGGTACTTCCGTTTTC
TTGGGCGGTTGCTTGGAAAGGCTTTGTTGGACGGGCAAATTGTGCGGCAT
CATTTGGTGAGACCCGTTATGAAGCACATCCTGGGGTGGCCGGTCGTGTT
GGCGGACCTGGAATACCTCGATGCGGAGACCTTGCAAAATTTGGGTAAAT
TACAAGATATGGACCCGGGCGTTTTGGGGGATCTATGCCTGGACTTTACT
GTGACGGAGAACTTTCTGGGTCAGTCGGAAACGGTGGAGCTGGTCCCAGA
CGGCGCGAACAAGACGTTGGACGCCGATAATCTCGATGCTTATCTGGAAG
CCAACTTGAAGTTTCGGTTGTGTGATCGGGTGAAGGTACAATTGAGGGAG
TTGCTGTTGGGATTTTATGAGTGTGTGCCCGAGGCTTTGTTGACGATTTT
CGATTTTCAGCAGTTGGAGTTGTTGCTGTGCGGGATGCCGAATTTGGACA
TCGCGGATTGGATGGCCCAAACAGAATACGGAGGGGAGTTCTCACGGCAA
GGCGCGCATCATCGCGTGGTTCAATGGTTTTGGGAGGTGGTGAGGGATGA
CTTTGATCAGGAGCAACGGGCGAGGTTATTACAGTTTACGACGGGCACTT
CGGGGGTCCCGGCACAGGGGTTTGCGTTTTTGCAGGGGAATGATGGGAAC
ATACGAAAATTTACGGTAAACAGTATTTCGTTGGAGCAATCCGTTTTCCC
TCGGGCACATACCTGCTTTAATCGGATTGATTTGCCGTTATACAAATCGA
AGAAGGATTTGAAGGAACGCCTGTCGCTGGCCATTCAGATGGAATCGTCG
GGGTTTTCGATTGAGTGA back to topCoding sequence (CDS) from alignment at chr4:734574..736841+ >NO04G02780.1 ID=NO04G02780.1|Name=NO04G02780.1|organism=Nannochloropsis oceanica|type=CDS|length=2268bp|location=Sequence derived from alignment at chr4:734574..736841+ (Nannochloropsis oceanica) ATGGGACAAGAACAAAGCGCTGCCAACCACCAACATCCGCAATCGCTTTA TCCCGGCGCGGGCGGCTCCCCCGGAGGGCTTCATGGTGGCGGCAGGCGGA GACCGACCTCAGGCATGTCTCCCTACCAGCAGCCCTCGCCCTCCTCCACA TTCCATTCCGGTGGTGGCGGCGGCGGGGGTCGCGCATCCCGGCCCGTCAA CACCGAACCGGGAGCATTCGACATCCCTGGACAACAGCGACAAGCGGGTC AGATTCGGGCGCAAGTACGGATACCAGCAGGGGTGCGACCAGGGCAGCAT TTCGCGGTGCTTTTGGAAGGGCAGCAAGTGATGGTCCGCTGTCCTGATCG TGCTTCGCCGGGTGATCTGATTGCAATTGAATTTCAAGCGTCCACATTCA TTGTGCAAGTGCCTGAAGGAGTCCATCCAGGACAGACTTTTGATGTGATG GTGCGTGGGGTCAGGCAACGAGTCACTTGCCCAGAGGGCGTGCGGCCCGG GATGCAAATCCGCTTTTCCTTGCCTCCCACCACTAGTGGTGCTGCTGGTG CTGGTGTGCCAGGAGTAGGATCTACAGGAGGGTCTACTGCGGGGCCGCCG GAGCTGTCGCCATTTGAGAAGTTGTATGAGGTGGTTGTGCCTCAGGGGGT ACGGCCAGGTGAACCTTTTGTTTTGTTGGCGGACGGGCAACGCGTGACGG TGACGTGTCCGGTTGATGCGCGACCGAATCATAAAATTCGATTCAAGTTG CCCATCGTCCCGACGAATGAGCAGTTGGCGGCGTACGAGATGAAGTACAA CAAGGATGGGTGGGTGCGGTGTCTTGGGGTTGATGTCAAATTTCACTGGT TTAAGGTCGATGCTTCCAATAGCAACTTGATCGGGAACAGTGCTATCGGT GGGGGTGGGGCGGGTGGAGGAAGGAGGCCCAAGATTGGTAATTTCTCGTT TGAAGACACGGCATTCGTAAGGTCATTTAGGGGTCCTCGTTCCTCACCTG AGTTGGTGCTAGTCCCACCCTCGGAGGTGGCGATGGACACGACAGTGGAG GGGACGAGACTGAATTTCCATACATTGTCGCATGGGGCTCAATTACCGTT CGATAAGAAGGTAGAGTTTTTTAGGCAGCATTGCTCGAGCTTGAAGGTGC CCTGGGAGAAAGGGCATATGGAGATAAGGGTACGGAGGTCGCAATTGCTC TCGGATTCGTTGATGGCGTTTGAGAGGATCAGCAAGGAGAATATGCGGAA GATCTTTCGATTTGAGTTTTTGGGCGAGCCAGCGATTGATGCGGGGGGGG TGGCGAGGGAGTGGTATGACCAGGTCACTGATGCCTTGTTTAACCCTGAT TTTGGTTTGTTTCAGTACAGTGGGGTAGATCAGATGTGCATGCAGATAAA CGCAGCGAGTGGTATGGTGGAAGCGCACCATGATCGGTACTTCCGTTTTC TTGGGCGGTTGCTTGGAAAGGCTTTGTTGGACGGGCAAATTGTGCGGCAT CATTTGGTGAGACCCGTTATGAAGCACATCCTGGGGTGGCCGGTCGTGTT GGCGGACCTGGAATACCTCGATGCGGAGACCTTGCAAAATTTGGGTAAAT TACAAGATATGGACCCGGGCGTTTTGGGGGATCTATGCCTGGACTTTACT GTGACGGAGAACTTTCTGGGTCAGTCGGAAACGGTGGAGCTGGTCCCAGA CGGCGCGAACAAGACGTTGGACGCCGATAATCTCGATGCTTATCTGGAAG CCAACTTGAAGTTTCGGTTGTGTGATCGGGTGAAGGTACAATTGAGGGAG TTGCTGTTGGGATTTTATGAGTGTGTGCCCGAGGCTTTGTTGACGATTTT CGATTTTCAGCAGTTGGAGTTGTTGCTGTGCGGGATGCCGAATTTGGACA TCGCGGATTGGATGGCCCAAACAGAATACGGAGGGGAGTTCTCACGGCAA GGCGCGCATCATCGCGTGGTTCAATGGTTTTGGGAGGTGGTGAGGGATGA CTTTGATCAGGAGCAACGGGCGAGGTTATTACAGTTTACGACGGGCACTT CGGGGGTCCCGGCACAGGGGTTTGCGTTTTTGCAGGGGAATGATGGGAAC ATACGAAAATTTACGGTAAACAGTATTTCGTTGGAGCAATCCGTTTTCCC TCGGGCACATACCTGCTTTAATCGGATTGATTTGCCGTTATACAAATCGA AGAAGGATTTGAAGGAACGCCTGTCGCTGGCCATTCAGATGGAATCGTCG GGGTTTTCGATTGAGTGA back to top
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