NO04G02750.1, NO04G02750.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO04G02750.1
Unique NameNO04G02750.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length777
Alignment locationchr4:729214..730454 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:729214..730454 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO04G02750.1 vs.
Match: EWM28728.1 (Mpv17/PMP22 [Nannochloropsis gaditana])

HSP 1 Score: 427.6 bits (1098), Expect = 2.800e-116
Identity = 220/256 (85.94%), Postives = 238/256 (92.97%), Query Frame = 0 
Query:    1 MRVALALVASLAVTEAYFKPLAPRQAPKLFSQAKSSVVPALSHGGIGGNGGNNDDLWGGWNGGGWNGGGNEEEGNVHYGGGLGMLWDKYNEVLESSPLPTKAVTSLVGFTIGDLLAQNFLGEKGAPLDVKRLLRLASFGLAVHGPVGHFFYGALDEKLPKKDAATVAMKVLIDQVLWAPIFTVIFFAWIELLQGSGLQKIKAKINQDLVRGVTASWKVWPLVHVINFRFIPSQQRLLYINTIQIGYNVFLSMLASR 257
            MRVA+AL+ SLA+ EAYF+PLAPR AP L S +K SV  +LSHGGIGGNGGN DD+WGGWNGGGWNGG ++E G  HYGGGLG+LWDKYNEVL+++PLPTKAVTSLVGFTIGDLLAQ+FLGEKGAPLDVKRLLRLASFGLAVHGPVGHFFYGALDEK PKKDA TVA+KVLIDQVLWAP+FTVIFFAWIE+LQG+GLQKIK KINQDLVRGVTASWKVWPLVHVINFRFIP QQRLLYINTIQIGYNVFLSMLASR
Sbjct:    1 MRVAVALLGSLALGEAYFRPLAPR-AP-LSSFSKCSVAQSLSHGGIGGNGGN-DDVWGGWNGGGWNGG-DDEHGGAHYGGGLGLLWDKYNEVLDTNPLPTKAVTSLVGFTIGDLLAQSFLGEKGAPLDVKRLLRLASFGLAVHGPVGHFFYGALDEKFPKKDAQTVAIKVLIDQVLWAPVFTVIFFAWIEVLQGAGLQKIKQKINQDLVRGVTASWKVWPLVHVINFRFIPPQQRLLYINTIQIGYNVFLSMLASR 252
The following BLAST results are available for this feature:
BLAST of NO04G02750.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28728.12.800e-11685.94Mpv17/PMP22 [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO04G02750NO04G02750Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO04G02750.1NO04G02750.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO04G02750.1.cds1NO04G02750.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G02750.1.cds2NO04G02750.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G02750.1.cds3NO04G02750.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO04G02750.1 ID=NO04G02750.1|Name=NO04G02750.1|organism=Nannochloropsis oceanica|type=mRNA|length=777bp
ATGCGTGTCGCGCTTGCCTTGGTCGCCTCTTTGGCCGTCACCGAGGCCTA
CTTCAAGCCCCTTGCCCCCCGTCAGGCGCCCAAGCTCTTTAGCCAGGCCA
AGAGCAGCGTGGTCCCCGCCCTCAGTCACGGTGGCATCGGCGGCAATGGC
GGTAACAATGATGATTTGTGGGGTGGGTGGAACGGTGGGGGCTGGAACGG
TGGGGGAAATGAGGAGGAAGGCAACGTACACTATGGGGGTGGCTTGGGCA
TGCTTTGGGACAAGTACAACGAGGTTCTCGAATCCAGCCCGTTGCCGACC
AAGGCGGTCACGTCTCTGGTGGGCTTTACAATCGGGGATCTGCTGGCTCA
GAACTTCTTGGGGGAGAAGGGGGCGCCACTTGATGTGAAGCGGTTGTTGC
GATTGGCTTCTTTTGGGCTGGCGGTGCACGGGCCTGTTGGTCACTTTTTT
TATGGGGCTCTGGATGAGAAGCTCCCAAAGAAGGATGCGGCTACCGTGGC
GATGAAGGTCTTGATTGACCAGGTGCTGTGGGCTCCTATTTTCACTGTTA
TTTTCTTCGCGTGGATTGAGCTGTTGCAGGGGTCTGGGTTGCAGAAGATT
AAGGCAAAGATCAACCAGGATCTGGTGCGGGGTGTGACAGCATCGTGGAA
GGTCTGGCCTTTGGTGCACGTGATTAACTTCCGTTTTATTCCTTCCCAGC
AGCGATTGTTGTACATCAATACGATCCAGATTGGCTACAACGTTTTCCTG
TCCATGTTGGCCTCCCGCACGGGTTAA
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protein sequence of NO04G02750.1

>NO04G02750.1-protein ID=NO04G02750.1-protein|Name=NO04G02750.1|organism=Nannochloropsis oceanica|type=polypeptide|length=259bp
MRVALALVASLAVTEAYFKPLAPRQAPKLFSQAKSSVVPALSHGGIGGNG
GNNDDLWGGWNGGGWNGGGNEEEGNVHYGGGLGMLWDKYNEVLESSPLPT
KAVTSLVGFTIGDLLAQNFLGEKGAPLDVKRLLRLASFGLAVHGPVGHFF
YGALDEKLPKKDAATVAMKVLIDQVLWAPIFTVIFFAWIELLQGSGLQKI
KAKINQDLVRGVTASWKVWPLVHVINFRFIPSQQRLLYINTIQIGYNVFL
SMLASRTG*
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mRNA from alignment at chr4:729214..730454+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO04G02750.1 ID=NO04G02750.1|Name=NO04G02750.1|organism=Nannochloropsis oceanica|type=mRNA|length=1241bp|location=Sequence derived from alignment at chr4:729214..730454+ (Nannochloropsis oceanica)
ATGCGTGTCGCGCTTGCCTTGGTCGCCTCTTTGGCCGTCACCGAGGCCTA
CTTCAAGCCCCTTGCCCCCCGTCAGGCGCCCAAGCTCTTTAGCCAGGCCA
AGAGCAGCGTGGTCCCCGCCCTCAGTCACGGTGGCATCGGCGGCAATGGC
GGTAACAATGATGATTTGTGGGGTGGGTGGAACGGTGGGGGCTGGAACGG
TGGGGGAAATGAGGAGGAAGGCAACGTACACTATGGGGGTGGCTTGGGCA
TGCTTTGGGACAAGTACAACGAGGTTCTCGAATCCAGCCCGTTGCCGACC
AAGGCGGTCACGTCTCTGGTGGGCTTTACAATCGGGGATCTGCTGGCTCA
GAACTTCTTGGGGGAGAAGGGGGCGCCACTTGATGTGAAGCGGTTGTTGC
GATTGGCTTCTTTTGGGCTGGCGGTGCACGGGCCTGTTGGTCACTTTTTT
TATGGGGCTCTGGATGAGAAGCTCCCAAAGAAGGATGCGGCTACCGTGGC
GATGAAGGTCTTGATTGACCAGGTGCTGTGGGCTCCTATTTTCACTGTTA
TTTTCTTCGCGTGGATTGAGCTGTTGCAGGGGTCTGGGTTGCAGAAGATT
AAGGCAAAGATCAACCAGGATCTGGTGCGGGGTGTGACAGCATCGTGGAA
GGTCTGGCCTTTGGTGCACGTGATTAACTTCCGTTTTATTCCTTCCCAGC
AGCGATTGTTGTACATCAATACGATCCAGGTGAGCCTCTTTTTGGTGTTG
TTTTGGTCCTGACTGGTTATGGCAAGACCAGTATGCGTTAAAAAAATAGG
TAGACCAGAAACATTTTTCACTTTCTTCTCATTCTCCTTCAATCCCCCTT
CTCCTTTCAGATTGGCTACAACGTTTTCCTGTCCATGTTGGCCTCCCGCA
CGGGTACGTGTGAGGGGAGGGAGTGGAGGGAGGAAGCGGGGATGTGCGAG
AAATTAGAATGGAACCGTCGCGGTTTCGGGTGTGACGGATGCTTATGTGG
AGCTCCTTTCTCACCTGCACCTGTGATATTTTGCTTGCTGTGTCGCCGAG
ATGCTTCTGTCGCATGCAGAAGAAAGACAGCCCTTTGTGTTCGTCTTTTC
AATGGGCCTCATCTCATAATATACAGACGCATGGTATTCCTCCATACCCT
CGCGACGTTGTTGTCCCCAAAAAAACACATTTAGCTTTCTTTTCTCATAC
TCTCGTTTTCGTCTCGCTTCATTCCAAATTACACAGGTTAA
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Coding sequence (CDS) from alignment at chr4:729214..730454+

>NO04G02750.1 ID=NO04G02750.1|Name=NO04G02750.1|organism=Nannochloropsis oceanica|type=CDS|length=777bp|location=Sequence derived from alignment at chr4:729214..730454+ (Nannochloropsis oceanica)
ATGCGTGTCGCGCTTGCCTTGGTCGCCTCTTTGGCCGTCACCGAGGCCTA
CTTCAAGCCCCTTGCCCCCCGTCAGGCGCCCAAGCTCTTTAGCCAGGCCA
AGAGCAGCGTGGTCCCCGCCCTCAGTCACGGTGGCATCGGCGGCAATGGC
GGTAACAATGATGATTTGTGGGGTGGGTGGAACGGTGGGGGCTGGAACGG
TGGGGGAAATGAGGAGGAAGGCAACGTACACTATGGGGGTGGCTTGGGCA
TGCTTTGGGACAAGTACAACGAGGTTCTCGAATCCAGCCCGTTGCCGACC
AAGGCGGTCACGTCTCTGGTGGGCTTTACAATCGGGGATCTGCTGGCTCA
GAACTTCTTGGGGGAGAAGGGGGCGCCACTTGATGTGAAGCGGTTGTTGC
GATTGGCTTCTTTTGGGCTGGCGGTGCACGGGCCTGTTGGTCACTTTTTT
TATGGGGCTCTGGATGAGAAGCTCCCAAAGAAGGATGCGGCTACCGTGGC
GATGAAGGTCTTGATTGACCAGGTGCTGTGGGCTCCTATTTTCACTGTTA
TTTTCTTCGCGTGGATTGAGCTGTTGCAGGGGTCTGGGTTGCAGAAGATT
AAGGCAAAGATCAACCAGGATCTGGTGCGGGGTGTGACAGCATCGTGGAA
GGTCTGGCCTTTGGTGCACGTGATTAACTTCCGTTTTATTCCTTCCCAGC
AGCGATTGTTGTACATCAATACGATCCAGATTGGCTACAACGTTTTCCTG
TCCATGTTGGCCTCCCGCACGGGTTAA
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Synonyms
Publications