NO04G02720.1, NO04G02720.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO04G02720.1
Unique NameNO04G02720.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length867
Alignment locationchr4:719381..720247 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:719381..720247 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO04G02720.1 vs.
Match: XP_005856161.1 (hypothetical protein NGA_2086900 [Nannochloropsis gaditana CCMP526]; EKU20200.1 hypothetical protein NGA_2086900 [Nannochloropsis gaditana CCMP526]; EWM28656.1 RNAse P, Rpr2/Rpp21 subunit [Nannochloropsis gaditana])

HSP 1 Score: 169.9 bits (429), Expect = 1.200e-38
Identity = 125/287 (43.55%), Postives = 167/287 (58.19%), Query Frame = 0 
Query:    8 RLLQGCHVPLSILAPP-PINQRGSLAAFPPMDPALLLRLEFLWQQSLAHLPTNPTYSRVLSRQLVRARDVALAHVALHPRLPDLLCPDCGVILVPGLTARARL-HPRRTSCPVNANRRRRNDEKHHRHQHDRTSGGENSRRPVP-MLRNEVAYACLLC-QGIRKRDGVPRRTGAATTSIGKESCVNVKVQGSIITTALPSPPSEQRTERQSILAPAEEEDFIPLHPESGK---KRPYQPQAQRLLLDAKPRKRKGKEEMKKLQQQQQLKSESRSIGQLRGFLSSLKK 288
            RLL+   VP S LAP   I+ +    A   ++PALLLRL++LW+Q+L+HLPTN TYSR LSR+ +R RD+  AH  LHP L D LCP CGVIL PG+TAR R+ H  + S    AN RR+     +++   R+    N    VP  L+N V YAC+LC +G R  DG  RR+    +++G+      K + S++        S   + +Q +    EEEDFIPL  ES +   K        RLLLD KPRKRK +EE  +  Q    KS SRS+GQ+RGFL+S +K
Sbjct:   14 RLLESFRVPSSALAPRLSISAQRGKPASDNVEPALLLRLDYLWKQALSHLPTNQTYSRALSRKFIRLRDLFSAHEVLHPHLSDCLCPVCGVILFPGVTARTRVQHGAKRS---QANARRKWMRLSNQNSDPRSGYAAN----VPCSLKNRVTYACMLCNRGSRTMDGATRRSEDKRSTLGEAR----KAETSLLCPGASGELSS--SSKQQVPDTTEEEDFIPLQSESFRQLQKHQKTLAPPRLLLDPKPRKRKRQEEPSRDGQ----KSVSRSLGQVRGFLASFQK 283
The following BLAST results are available for this feature:
BLAST of NO04G02720.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005856161.11.200e-3843.55hypothetical protein NGA_2086900 [Nannochloropsis ... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO04G02720NO04G02720Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO04G02720.1NO04G02720.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO04G02720.1.cds1NO04G02720.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO04G02720.1 ID=NO04G02720.1|Name=NO04G02720.1|organism=Nannochloropsis oceanica|type=mRNA|length=867bp
ATGGCCACAACGTCCCTCCATCGTCTTCTGCAAGGATGCCATGTGCCCCT
CTCCATCCTCGCCCCTCCCCCAATCAACCAAAGAGGCTCCCTTGCCGCAT
TCCCCCCCATGGATCCGGCCTTGCTTTTGCGCCTTGAGTTCTTATGGCAA
CAATCTTTGGCTCACCTCCCCACCAATCCCACCTACTCTCGAGTTCTCTC
CCGGCAACTTGTTCGCGCTCGCGACGTTGCCCTCGCTCATGTCGCACTTC
ACCCGCGTTTGCCCGACTTGCTCTGTCCAGATTGCGGCGTCATACTCGTC
CCCGGGCTCACGGCCCGCGCCCGTCTTCACCCTCGACGCACATCCTGCCC
CGTCAACGCAAACCGTCGCCGTCGTAACGACGAGAAGCATCATCGTCATC
AGCATGACCGCACTAGCGGTGGTGAGAATAGCAGGAGGCCAGTCCCGATG
CTCAGAAATGAGGTAGCTTACGCCTGCTTGCTTTGCCAGGGGATTCGCAA
ACGGGATGGCGTGCCACGGAGGACAGGAGCTGCTACTACTTCTATTGGCA
AGGAATCTTGCGTCAATGTTAAAGTCCAAGGCTCCATAATAACTACGGCA
CTACCATCACCACCATCAGAACAGCGAACAGAGCGACAATCTATACTCGC
GCCGGCAGAGGAAGAGGACTTCATCCCTCTACACCCTGAATCAGGGAAAA
AACGACCGTACCAGCCACAAGCCCAACGCTTGCTTTTGGATGCCAAGCCC
CGCAAACGGAAGGGAAAAGAGGAAATGAAAAAGCTGCAGCAGCAACAACA
ATTAAAGTCAGAATCCCGTTCAATAGGGCAGCTCCGGGGTTTCCTTTCGT
CTCTGAAGAAGCCATGA
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protein sequence of NO04G02720.1

>NO04G02720.1-protein ID=NO04G02720.1-protein|Name=NO04G02720.1|organism=Nannochloropsis oceanica|type=polypeptide|length=289bp
MATTSLHRLLQGCHVPLSILAPPPINQRGSLAAFPPMDPALLLRLEFLWQ
QSLAHLPTNPTYSRVLSRQLVRARDVALAHVALHPRLPDLLCPDCGVILV
PGLTARARLHPRRTSCPVNANRRRRNDEKHHRHQHDRTSGGENSRRPVPM
LRNEVAYACLLCQGIRKRDGVPRRTGAATTSIGKESCVNVKVQGSIITTA
LPSPPSEQRTERQSILAPAEEEDFIPLHPESGKKRPYQPQAQRLLLDAKP
RKRKGKEEMKKLQQQQQLKSESRSIGQLRGFLSSLKKP*
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mRNA from alignment at chr4:719381..720247-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO04G02720.1 ID=NO04G02720.1|Name=NO04G02720.1|organism=Nannochloropsis oceanica|type=mRNA|length=867bp|location=Sequence derived from alignment at chr4:719381..720247- (Nannochloropsis oceanica)
ATGGCCACAACGTCCCTCCATCGTCTTCTGCAAGGATGCCATGTGCCCCT
CTCCATCCTCGCCCCTCCCCCAATCAACCAAAGAGGCTCCCTTGCCGCAT
TCCCCCCCATGGATCCGGCCTTGCTTTTGCGCCTTGAGTTCTTATGGCAA
CAATCTTTGGCTCACCTCCCCACCAATCCCACCTACTCTCGAGTTCTCTC
CCGGCAACTTGTTCGCGCTCGCGACGTTGCCCTCGCTCATGTCGCACTTC
ACCCGCGTTTGCCCGACTTGCTCTGTCCAGATTGCGGCGTCATACTCGTC
CCCGGGCTCACGGCCCGCGCCCGTCTTCACCCTCGACGCACATCCTGCCC
CGTCAACGCAAACCGTCGCCGTCGTAACGACGAGAAGCATCATCGTCATC
AGCATGACCGCACTAGCGGTGGTGAGAATAGCAGGAGGCCAGTCCCGATG
CTCAGAAATGAGGTAGCTTACGCCTGCTTGCTTTGCCAGGGGATTCGCAA
ACGGGATGGCGTGCCACGGAGGACAGGAGCTGCTACTACTTCTATTGGCA
AGGAATCTTGCGTCAATGTTAAAGTCCAAGGCTCCATAATAACTACGGCA
CTACCATCACCACCATCAGAACAGCGAACAGAGCGACAATCTATACTCGC
GCCGGCAGAGGAAGAGGACTTCATCCCTCTACACCCTGAATCAGGGAAAA
AACGACCGTACCAGCCACAAGCCCAACGCTTGCTTTTGGATGCCAAGCCC
CGCAAACGGAAGGGAAAAGAGGAAATGAAAAAGCTGCAGCAGCAACAACA
ATTAAAGTCAGAATCCCGTTCAATAGGGCAGCTCCGGGGTTTCCTTTCGT
CTCTGAAGAAGCCATGA
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Coding sequence (CDS) from alignment at chr4:719381..720247-

>NO04G02720.1 ID=NO04G02720.1|Name=NO04G02720.1|organism=Nannochloropsis oceanica|type=CDS|length=867bp|location=Sequence derived from alignment at chr4:719381..720247- (Nannochloropsis oceanica)
ATGGCCACAACGTCCCTCCATCGTCTTCTGCAAGGATGCCATGTGCCCCT
CTCCATCCTCGCCCCTCCCCCAATCAACCAAAGAGGCTCCCTTGCCGCAT
TCCCCCCCATGGATCCGGCCTTGCTTTTGCGCCTTGAGTTCTTATGGCAA
CAATCTTTGGCTCACCTCCCCACCAATCCCACCTACTCTCGAGTTCTCTC
CCGGCAACTTGTTCGCGCTCGCGACGTTGCCCTCGCTCATGTCGCACTTC
ACCCGCGTTTGCCCGACTTGCTCTGTCCAGATTGCGGCGTCATACTCGTC
CCCGGGCTCACGGCCCGCGCCCGTCTTCACCCTCGACGCACATCCTGCCC
CGTCAACGCAAACCGTCGCCGTCGTAACGACGAGAAGCATCATCGTCATC
AGCATGACCGCACTAGCGGTGGTGAGAATAGCAGGAGGCCAGTCCCGATG
CTCAGAAATGAGGTAGCTTACGCCTGCTTGCTTTGCCAGGGGATTCGCAA
ACGGGATGGCGTGCCACGGAGGACAGGAGCTGCTACTACTTCTATTGGCA
AGGAATCTTGCGTCAATGTTAAAGTCCAAGGCTCCATAATAACTACGGCA
CTACCATCACCACCATCAGAACAGCGAACAGAGCGACAATCTATACTCGC
GCCGGCAGAGGAAGAGGACTTCATCCCTCTACACCCTGAATCAGGGAAAA
AACGACCGTACCAGCCACAAGCCCAACGCTTGCTTTTGGATGCCAAGCCC
CGCAAACGGAAGGGAAAAGAGGAAATGAAAAAGCTGCAGCAGCAACAACA
ATTAAAGTCAGAATCCCGTTCAATAGGGCAGCTCCGGGGTTTCCTTTCGT
CTCTGAAGAAGCCATGA
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Synonyms
Publications