NO04G02660.1, NO04G02660.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO04G02660.1
Unique NameNO04G02660.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length942
Alignment locationchr4:710120..711061 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:710120..711061 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO04G02660.1 vs.
Match: EWM28655.1 (unidentified vitellogenin-linked transcript family member (uvt-5) [Nannochloropsis gaditana])

HSP 1 Score: 376.7 bits (966), Expect = 7.000e-101
Identity = 174/286 (60.84%), Postives = 221/286 (77.27%), Query Frame = 0 
Query:   18 AFVTLITTDSFSPGARVLLHSLQSSMKTTPIAKHFKPAIILLVTPQVTEGIRKGLRGLCDDLIEVQPIPNPYATQTHVSGWVDSGFTKLRIWSLLRFERVVYLDADCLVFNDLRELFTLDVDFAAAPDVFPPDRFNAGVLLLRPDIDLFDDLLRHVNSRTLSSYDGGDTGFLNAYLPDWSSGPLLLPTTTARSSASDTCSSSSSSINTYVSFRGISLARLPFVWNAQRTMHWMTHAKAPGYWDSIAPSINILHFSSSPKPWESEGAIKKGELEMIWWAEFVQAQMA 304
            AFVTL+TTDSF PGA+VLLHSL++S+         +P +++LVTP+++E  RKGL G CD+L+ V+PI NPYA  +HVSGWVDSGFTKL+IW L +FERVVYLDADCLV  D++ELF+ DVDFAAAPD+FPPDRFNAGV+L+RP++D+++D+LR V +  L SYDGGDTGFLNA+ P W S PL+   T + SS+  TC  ++         + +S+ARLPF+WNAQRT+HWMTHA APGYW ++A  + ILHFSSSPKPWE EG  KKGELE+ WW  FV+  MA
Sbjct:   25 AFVTLLTTDSFGPGAQVLLHSLRTSISAKDKDVAIRPVVVVLVTPEISERTRKGLEGFCDELLTVEPIANPYAENSHVSGWVDSGFTKLQIWGLTQFERVVYLDADCLVVEDIQELFSADVDFAAAPDIFPPDRFNAGVMLVRPNLDVYEDMLRAVKAGALPSYDGGDTGFLNAFFPKWYSSPLV--RTGSTSSSFSTCGGNTMP-------QKVSMARLPFIWNAQRTLHWMTHAVAPGYWGAVATRVKILHFSSSPKPWEPEGVRKKGELEVKWWTTFVEMHMA 301
The following BLAST results are available for this feature:
BLAST of NO04G02660.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28655.17.000e-10160.84unidentified vitellogenin-linked transcript family... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO04G02660NO04G02660Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO04G02660.1NO04G02660.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO04G02660.1.cds1NO04G02660.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO04G02660.1 ID=NO04G02660.1|Name=NO04G02660.1|organism=Nannochloropsis oceanica|type=mRNA|length=942bp
ATGTCCAGCCCCACCGCCGATACCGAATTCGCCCTTGCCCAGCCTTCCTG
CGCGTTCGTCACGCTCATCACCACGGACTCTTTCAGCCCAGGAGCCAGGG
TTCTACTCCATTCCTTGCAGAGTTCTATGAAGACGACACCAATTGCAAAG
CACTTCAAGCCCGCCATCATCCTGTTGGTCACGCCGCAAGTCACGGAAGG
CATTCGGAAAGGCCTGCGAGGATTGTGCGATGATTTAATTGAAGTGCAAC
CCATTCCCAACCCTTACGCAACTCAAACCCACGTGAGCGGATGGGTGGAC
TCAGGCTTCACCAAGCTTCGCATTTGGAGCTTACTTCGCTTTGAACGCGT
GGTGTACCTAGATGCAGACTGCCTGGTGTTCAATGACTTGCGGGAGCTTT
TTACCCTTGATGTGGACTTTGCCGCGGCGCCTGATGTCTTCCCCCCGGAC
CGATTCAATGCTGGCGTGTTGCTCTTGCGGCCGGACATTGATCTTTTTGA
CGATTTACTTCGGCATGTAAACAGTCGGACTTTATCTTCTTACGACGGAG
GAGACACAGGCTTTCTCAACGCTTATTTACCCGACTGGTCTTCCGGCCCT
CTTCTCCTCCCTACTACCACCGCGCGCAGCAGCGCAAGCGATACTTGCAG
CAGCAGTAGTAGTAGCATCAATACCTATGTATCCTTTCGGGGCATATCGT
TGGCTCGATTGCCTTTTGTGTGGAACGCACAACGCACGATGCACTGGATG
ACTCACGCCAAGGCCCCGGGGTACTGGGATAGTATTGCACCGTCCATAAA
CATATTGCATTTTTCATCGAGCCCTAAGCCGTGGGAATCTGAGGGGGCGA
TCAAGAAGGGGGAGTTGGAAATGATATGGTGGGCGGAATTTGTCCAAGCA
CAAATGGCGGGGTCCATGATGGGGGGAGAGATGACAAAATAG
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protein sequence of NO04G02660.1

>NO04G02660.1-protein ID=NO04G02660.1-protein|Name=NO04G02660.1|organism=Nannochloropsis oceanica|type=polypeptide|length=314bp
MSSPTADTEFALAQPSCAFVTLITTDSFSPGARVLLHSLQSSMKTTPIAK
HFKPAIILLVTPQVTEGIRKGLRGLCDDLIEVQPIPNPYATQTHVSGWVD
SGFTKLRIWSLLRFERVVYLDADCLVFNDLRELFTLDVDFAAAPDVFPPD
RFNAGVLLLRPDIDLFDDLLRHVNSRTLSSYDGGDTGFLNAYLPDWSSGP
LLLPTTTARSSASDTCSSSSSSINTYVSFRGISLARLPFVWNAQRTMHWM
THAKAPGYWDSIAPSINILHFSSSPKPWESEGAIKKGELEMIWWAEFVQA
QMAGSMMGGEMTK*
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mRNA from alignment at chr4:710120..711061-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO04G02660.1 ID=NO04G02660.1|Name=NO04G02660.1|organism=Nannochloropsis oceanica|type=mRNA|length=942bp|location=Sequence derived from alignment at chr4:710120..711061- (Nannochloropsis oceanica)
ATGTCCAGCCCCACCGCCGATACCGAATTCGCCCTTGCCCAGCCTTCCTG
CGCGTTCGTCACGCTCATCACCACGGACTCTTTCAGCCCAGGAGCCAGGG
TTCTACTCCATTCCTTGCAGAGTTCTATGAAGACGACACCAATTGCAAAG
CACTTCAAGCCCGCCATCATCCTGTTGGTCACGCCGCAAGTCACGGAAGG
CATTCGGAAAGGCCTGCGAGGATTGTGCGATGATTTAATTGAAGTGCAAC
CCATTCCCAACCCTTACGCAACTCAAACCCACGTGAGCGGATGGGTGGAC
TCAGGCTTCACCAAGCTTCGCATTTGGAGCTTACTTCGCTTTGAACGCGT
GGTGTACCTAGATGCAGACTGCCTGGTGTTCAATGACTTGCGGGAGCTTT
TTACCCTTGATGTGGACTTTGCCGCGGCGCCTGATGTCTTCCCCCCGGAC
CGATTCAATGCTGGCGTGTTGCTCTTGCGGCCGGACATTGATCTTTTTGA
CGATTTACTTCGGCATGTAAACAGTCGGACTTTATCTTCTTACGACGGAG
GAGACACAGGCTTTCTCAACGCTTATTTACCCGACTGGTCTTCCGGCCCT
CTTCTCCTCCCTACTACCACCGCGCGCAGCAGCGCAAGCGATACTTGCAG
CAGCAGTAGTAGTAGCATCAATACCTATGTATCCTTTCGGGGCATATCGT
TGGCTCGATTGCCTTTTGTGTGGAACGCACAACGCACGATGCACTGGATG
ACTCACGCCAAGGCCCCGGGGTACTGGGATAGTATTGCACCGTCCATAAA
CATATTGCATTTTTCATCGAGCCCTAAGCCGTGGGAATCTGAGGGGGCGA
TCAAGAAGGGGGAGTTGGAAATGATATGGTGGGCGGAATTTGTCCAAGCA
CAAATGGCGGGGTCCATGATGGGGGGAGAGATGACAAAATAG
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Coding sequence (CDS) from alignment at chr4:710120..711061-

>NO04G02660.1 ID=NO04G02660.1|Name=NO04G02660.1|organism=Nannochloropsis oceanica|type=CDS|length=942bp|location=Sequence derived from alignment at chr4:710120..711061- (Nannochloropsis oceanica)
ATGTCCAGCCCCACCGCCGATACCGAATTCGCCCTTGCCCAGCCTTCCTG
CGCGTTCGTCACGCTCATCACCACGGACTCTTTCAGCCCAGGAGCCAGGG
TTCTACTCCATTCCTTGCAGAGTTCTATGAAGACGACACCAATTGCAAAG
CACTTCAAGCCCGCCATCATCCTGTTGGTCACGCCGCAAGTCACGGAAGG
CATTCGGAAAGGCCTGCGAGGATTGTGCGATGATTTAATTGAAGTGCAAC
CCATTCCCAACCCTTACGCAACTCAAACCCACGTGAGCGGATGGGTGGAC
TCAGGCTTCACCAAGCTTCGCATTTGGAGCTTACTTCGCTTTGAACGCGT
GGTGTACCTAGATGCAGACTGCCTGGTGTTCAATGACTTGCGGGAGCTTT
TTACCCTTGATGTGGACTTTGCCGCGGCGCCTGATGTCTTCCCCCCGGAC
CGATTCAATGCTGGCGTGTTGCTCTTGCGGCCGGACATTGATCTTTTTGA
CGATTTACTTCGGCATGTAAACAGTCGGACTTTATCTTCTTACGACGGAG
GAGACACAGGCTTTCTCAACGCTTATTTACCCGACTGGTCTTCCGGCCCT
CTTCTCCTCCCTACTACCACCGCGCGCAGCAGCGCAAGCGATACTTGCAG
CAGCAGTAGTAGTAGCATCAATACCTATGTATCCTTTCGGGGCATATCGT
TGGCTCGATTGCCTTTTGTGTGGAACGCACAACGCACGATGCACTGGATG
ACTCACGCCAAGGCCCCGGGGTACTGGGATAGTATTGCACCGTCCATAAA
CATATTGCATTTTTCATCGAGCCCTAAGCCGTGGGAATCTGAGGGGGCGA
TCAAGAAGGGGGAGTTGGAAATGATATGGTGGGCGGAATTTGTCCAAGCA
CAAATGGCGGGGTCCATGATGGGGGGAGAGATGACAAAATAG
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Synonyms
Publications