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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr4 | genome | chr4:693126..695594 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO04G02600.1 vs.
Match: EWM28653.1 (kif1-binding protein [Nannochloropsis gaditana]) HSP 1 Score: 550.8 bits (1418), Expect = 6.000e-153 Identity = 338/664 (50.90%), Postives = 418/664 (62.95%), Query Frame = 0
Query: 75 HLNKACNIFFPDLCSWIGSTQAQAAADQEMQQQQQEKQHPQGLKDDEEPVPPLAIGNVLKKALNAPDPSTGAAAAAV--------------AEEAVETLNLLALLMSGREEIAQARLYLLAAKEAYRVLEPFCPAPPSPSTPTAVAAAIGDKKEKENTEKEEEIANSTAAGESARSNSIPNPNSRFRRLIDDHHTHSLYYLAQIYGQLKQADASAWYCYQTLAKQVEWEEGRLDVWGWVSNCMSLIDYLVGVRGDREAAARCLHACSVLLTRDKEGEE-----GWAGQEKSMFIRADIHRRWAALYCSTLQEAAERVEEEETGAARMERREESAISVAFVVHFPTLET--------ALAGGNSAAPPASLPQPKAINTFAEARFVFLLAQKHLDAALEFFKLDGHVTDHVHLMRAVSRLYRDLSLFETDEKRRQAMFLRRANALQPLVDQLNPRAYVGLSKMLLFELGEVYLTLLEVKSARIEQKLKGGRGRERGKGG------ACMPSKADGEKCDEYCRLAIGAFEGFVALYQKD--PEGGRE---------GGKAVVWDLPSKDDFKPVFRALFHLARLYGQMSVYGGPGEGAHKERIDGNKKSLEAYEWIREFAAEQMERLWGRDEEGIEEGKEMYAEELGVCNEMVRMLPEKIARMHYQ 695
HL+KAC+IFFP L W+ S A A + E + + ++ P G+ EP PPLAI N++ P + + AAAV AE+AVE LNLL LL S REE+ +ARLYLLAAK AYR+LEP+CP+ + AA + + N +E + A +AR + S FRR ID HHTH+LYYLAQ+YG L+ ADASA YCYQTLA+Q+EWE LDV GWV NCMSL+DYL+G +GD+EAAA CL AC VLL R++E + G A +E A +HR+WA LY S L+EAA E R E R +A V F FP+L + A G + A P+ LP P +I +FA+AR VFL AQKHL AAL +F LDGHVT+HVHL+R S+ YRDL++FE+D+KRRQAMFLRRA LQPL+D LNPRAY GL K++ FELGEVYLTLLE K+AR+E+KL R RG A PSKA+ EKCD YCRLAI AFE FV LY K P RE G + V WDLPSK+DFKPVFRA FHLARLYG+M V+GG GE AH+ R+ G KKSL YEW+R FA E + RL+G E +AEEL +C++M MLPEKIAR H++
Sbjct: 2 HLSKACDIFFPGLSLWVESQVADAQGE-EKEGRTEDMGPPGGVV--AEPNPPLAISNLVGTYEGHAFPRSPSGAAAVNEVVSAACTDTSAAAEDAVEDLNLLGLLWSDREEMGRARLYLLAAKAAYRMLEPYCPSSVN------AAATLSGTAAQLNGSEEGPMKTVGRAAPAARGPEGADRRS-FRRPIDGHHTHTLYYLAQVYGALRNADASASYCYQTLARQLEWEL-TLDVCGWVGNCMSLVDYLLGEQGDKEAAAWCLEACDVLLRREEEAKARGEGPGTAREEARALSVAGVHRKWAVLYASILEEAAALALGE---LDRNEARRPAAFLVGFPRLFPSLSSPSSPLAPDASPAGATCAQPSRLPLPPSITSFAQARPVFLQAQKHLAAALSYFVLDGHVTEHVHLLREQSKAYRDLAVFESDDKRRQAMFLRRAGLLQPLLDDLNPRAYAGLLKVVSFELGEVYLTLLETKAARVEEKLSQAGRRARGDEDDNKALEAYEPSKAEAEKCDTYCRLAIAAFEHFVRLYHKQSPPPDVRETSSPGLKASGVENVAWDLPSKEDFKPVFRAHFHLARLYGRMHVFGGQGEEAHEGRVAGMKKSLATYEWLRGFAREHICRLYGASAGPCE---RHFAEELKICDDMSAMLPEKIAREHFK 648
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO04G02600.1 ID=NO04G02600.1|Name=NO04G02600.1|organism=Nannochloropsis oceanica|type=mRNA|length=2284bp
CAGACACGCCCTCTGCCAGTTCTCGAAATTCGCCAAATCTCAATCCGCGG
ACACATGCCCCCCTTCATGCCCGCGCTGCCCCACATCGATGCCCTCCTTG
CCCGCGAGGATGACAGCAAGACCCCCTATGTCTCCAAGTACGAAGCCCGC
CGTCTTCTACAGGCATGTCAGGCCGAAAAAGGGACAGAGCTTGAGCCCGT
GCTGGGCGCTCGCATCGCTTACCGGCTCGGCAAAATAGCCCTAGACGTGG
AAGAACCGCAGCAAGAAGCGGAGGCACATCTTAACAAGGCCTGCAACATA
TTCTTTCCCGACTTGTGTTCTTGGATTGGAAGCACACAAGCACAAGCAGC
AGCCGACCAGGAAATGCAGCAGCAGCAGCAGGAGAAGCAGCATCCGCAGG
GGCTAAAGGATGATGAGGAGCCTGTTCCCCCTCTAGCAATTGGCAATGTG
CTCAAGAAGGCTCTAAACGCACCTGATCCATCAACCGGAGCAGCAGCAGC
AGCAGTAGCGGAGGAAGCAGTCGAGACGTTGAATCTGTTGGCATTGCTGA
TGAGTGGAAGGGAGGAAATAGCCCAGGCTCGATTATATTTGCTGGCAGCG
AAAGAGGCGTACAGAGTGCTAGAACCCTTTTGTCCTGCCCCACCCTCTCC
TAGTACACCTACTGCTGTGGCTGCTGCTATTGGTGACAAGAAAGAGAAAG
AAAACACCGAGAAGGAAGAAGAAATCGCTAACAGCACGGCAGCGGGCGAA
AGCGCCCGCAGTAACTCGATCCCCAACCCCAACTCAAGATTTCGTCGCCT
TATCGACGACCATCACACGCACTCCCTTTATTATCTTGCCCAGATCTACG
GCCAGCTCAAGCAGGCCGATGCCTCGGCCTGGTATTGCTATCAAACGTTG
GCAAAGCAGGTGGAGTGGGAAGAGGGAAGGTTGGACGTATGGGGATGGGT
GAGCAATTGCATGAGTCTGATTGATTACTTGGTGGGGGTAAGGGGGGACA
GAGAGGCCGCGGCACGGTGCTTGCATGCGTGTAGTGTGCTGTTGACGAGG
GACAAGGAGGGGGAGGAGGGTTGGGCGGGGCAGGAGAAGAGTATGTTCAT
AAGGGCTGATATACATAGGAGGTGGGCGGCTTTGTATTGTTCGACTTTGC
AGGAAGCGGCGGAGAGGGTTGAAGAAGAGGAGACGGGGGCGGCTAGAATG
GAGAGAAGAGAGGAGAGTGCAATATCAGTGGCATTTGTCGTGCATTTTCC
CACCCTAGAGACTGCCCTCGCTGGTGGTAATAGTGCTGCTCCTCCGGCTT
CTCTCCCCCAGCCAAAGGCCATCAATACGTTTGCGGAGGCTCGATTCGTG
TTTTTGCTGGCACAGAAGCACTTGGATGCCGCCCTTGAATTCTTTAAGTT
GGACGGACATGTGACCGACCACGTTCATCTTATGAGAGCCGTGAGTCGAC
TATACCGTGACTTATCTTTGTTTGAGACGGACGAGAAACGCCGCCAGGCC
ATGTTCTTACGGAGGGCCAACGCTCTGCAGCCGCTGGTAGACCAATTGAA
TCCCCGCGCTTATGTGGGTTTGTCAAAGATGTTGTTGTTTGAATTGGGGG
AAGTTTATTTGACATTGTTGGAGGTGAAGAGTGCTAGGATCGAGCAAAAA
TTGAAGGGAGGTCGAGGGAGGGAGAGAGGAAAGGGAGGCGCTTGTATGCC
AAGTAAGGCGGACGGCGAGAAATGCGACGAGTACTGTCGGTTGGCTATTG
GAGCGTTTGAAGGCTTTGTGGCTTTGTATCAAAAAGACCCCGAGGGAGGG
AGGGAGGGAGGGAAGGCGGTAGTGTGGGATTTGCCTAGCAAGGATGATTT
TAAACCTGTTTTCCGCGCGTTGTTTCACTTGGCAAGGTTATACGGACAAA
TGAGTGTGTATGGAGGTCCAGGAGAAGGCGCTCACAAGGAGAGGATCGAT
GGGAATAAAAAAAGTTTAGAGGCTTACGAATGGATCCGAGAATTCGCGGC
CGAGCAGATGGAGAGGTTGTGGGGTCGGGACGAGGAAGGGATAGAGGAAG
GGAAGGAGATGTATGCGGAGGAGTTGGGTGTATGTAATGAGATGGTTCGG
ATGTTGCCGGAGAAGATTGCAAGGATGCATTATCAGAAGGTGGCCTTTTA
GTTTTAAGATAGTGAGGGTGGATGAGGATTTAGCGTTAGTCCCTGAGATA
AGGGAAAAACTAAAGGTACAGCAGAAATAGAATTTCATCAACCCCCCTCT
TCAAGCACAAAAAGAAGAATGCATGCTAGTTTAC back to topprotein sequence of NO04G02600.1 >NO04G02600.1-protein ID=NO04G02600.1-protein|Name=NO04G02600.1|organism=Nannochloropsis oceanica|type=polypeptide|length=699bp
MPPFMPALPHIDALLAREDDSKTPYVSKYEARRLLQACQAEKGTELEPVL
GARIAYRLGKIALDVEEPQQEAEAHLNKACNIFFPDLCSWIGSTQAQAAA
DQEMQQQQQEKQHPQGLKDDEEPVPPLAIGNVLKKALNAPDPSTGAAAAA
VAEEAVETLNLLALLMSGREEIAQARLYLLAAKEAYRVLEPFCPAPPSPS
TPTAVAAAIGDKKEKENTEKEEEIANSTAAGESARSNSIPNPNSRFRRLI
DDHHTHSLYYLAQIYGQLKQADASAWYCYQTLAKQVEWEEGRLDVWGWVS
NCMSLIDYLVGVRGDREAAARCLHACSVLLTRDKEGEEGWAGQEKSMFIR
ADIHRRWAALYCSTLQEAAERVEEEETGAARMERREESAISVAFVVHFPT
LETALAGGNSAAPPASLPQPKAINTFAEARFVFLLAQKHLDAALEFFKLD
GHVTDHVHLMRAVSRLYRDLSLFETDEKRRQAMFLRRANALQPLVDQLNP
RAYVGLSKMLLFELGEVYLTLLEVKSARIEQKLKGGRGRERGKGGACMPS
KADGEKCDEYCRLAIGAFEGFVALYQKDPEGGREGGKAVVWDLPSKDDFK
PVFRALFHLARLYGQMSVYGGPGEGAHKERIDGNKKSLEAYEWIREFAAE
QMERLWGRDEEGIEEGKEMYAEELGVCNEMVRMLPEKIARMHYQKVAF* back to topmRNA from alignment at chr4:693126..695594- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO04G02600.1 ID=NO04G02600.1|Name=NO04G02600.1|organism=Nannochloropsis oceanica|type=mRNA|length=2469bp|location=Sequence derived from alignment at chr4:693126..695594- (Nannochloropsis oceanica)
CAGACACGCCCTCTGCCAGTTCTCGAAATTCGCCAAATCTCAATCCGCGG
ACACATGCCCCCCTTCATGCCCGCGCTGCCCCACATCGATGCCCTCCTTG
CCCGCGAGGATGACAGCAAGACCCCCTATGTCTCCAAGTACGAAGCCCGC
CGTCTTCTACAGGCATGTCAGGCCGAAAAAGGGACAGAGCTTGAGCCCGT
GCTGGGCGCTCGCATCGCTTACCGGCTCGGCAAAATAGGTACGAGAGTTG
CTGGGTTGGGCCTCGGGGATTGAGTGAGGCGTGGCCTTGGAGGATAGGTT
GTATGCTTGACCGAGCCTTACATTCTACTGCTGCTGCTGGCGCTAATCTC
AAACAGGAGAAGCACTGTTCATCCCCACTGCCGTCATTCATTCAGTTCCT
CTCCTCCTTCCCCCCGCCCACAGCCCTAGACGTGGAAGAACCGCAGCAAG
AAGCGGAGGCACATCTTAACAAGGCCTGCAACATATTCTTTCCCGACTTG
TGTTCTTGGATTGGAAGCACACAAGCACAAGCAGCAGCCGACCAGGAAAT
GCAGCAGCAGCAGCAGGAGAAGCAGCATCCGCAGGGGCTAAAGGATGATG
AGGAGCCTGTTCCCCCTCTAGCAATTGGCAATGTGCTCAAGAAGGCTCTA
AACGCACCTGATCCATCAACCGGAGCAGCAGCAGCAGCAGTAGCGGAGGA
AGCAGTCGAGACGTTGAATCTGTTGGCATTGCTGATGAGTGGAAGGGAGG
AAATAGCCCAGGCTCGATTATATTTGCTGGCAGCGAAAGAGGCGTACAGA
GTGCTAGAACCCTTTTGTCCTGCCCCACCCTCTCCTAGTACACCTACTGC
TGTGGCTGCTGCTATTGGTGACAAGAAAGAGAAAGAAAACACCGAGAAGG
AAGAAGAAATCGCTAACAGCACGGCAGCGGGCGAAAGCGCCCGCAGTAAC
TCGATCCCCAACCCCAACTCAAGATTTCGTCGCCTTATCGACGACCATCA
CACGCACTCCCTTTATTATCTTGCCCAGATCTACGGCCAGCTCAAGCAGG
CCGATGCCTCGGCCTGGTATTGCTATCAAACGTTGGCAAAGCAGGTGGAG
TGGGAAGAGGGAAGGTTGGACGTATGGGGATGGGTGAGCAATTGCATGAG
TCTGATTGATTACTTGGTGGGGGTAAGGGGGGACAGAGAGGCCGCGGCAC
GGTGCTTGCATGCGTGTAGTGTGCTGTTGACGAGGGACAAGGAGGGGGAG
GAGGGTTGGGCGGGGCAGGAGAAGAGTATGTTCATAAGGGCTGATATACA
TAGGAGGTGGGCGGCTTTGTATTGTTCGACTTTGCAGGAAGCGGCGGAGA
GGGTTGAAGAAGAGGAGACGGGGGCGGCTAGAATGGAGAGAAGAGAGGAG
AGTGCAATATCAGTGGCATTTGTCGTGCATTTTCCCACCCTAGAGACTGC
CCTCGCTGGTGGTAATAGTGCTGCTCCTCCGGCTTCTCTCCCCCAGCCAA
AGGCCATCAATACGTTTGCGGAGGCTCGATTCGTGTTTTTGCTGGCACAG
AAGCACTTGGATGCCGCCCTTGAATTCTTTAAGTTGGACGGACATGTGAC
CGACCACGTTCATCTTATGAGAGCCGTGAGTCGACTATACCGTGACTTAT
CTTTGTTTGAGACGGACGAGAAACGCCGCCAGGCCATGTTCTTACGGAGG
GCCAACGCTCTGCAGCCGCTGGTAGACCAATTGAATCCCCGCGCTTATGT
GGGTTTGTCAAAGATGTTGTTGTTTGAATTGGGGGAAGTTTATTTGACAT
TGTTGGAGGTGAAGAGTGCTAGGATCGAGCAAAAATTGAAGGGAGGTCGA
GGGAGGGAGAGAGGAAAGGGAGGCGCTTGTATGCCAAGTAAGGCGGACGG
CGAGAAATGCGACGAGTACTGTCGGTTGGCTATTGGAGCGTTTGAAGGCT
TTGTGGCTTTGTATCAAAAAGACCCCGAGGGAGGGAGGGAGGGAGGGAAG
GCGGTAGTGTGGGATTTGCCTAGCAAGGATGATTTTAAACCTGTTTTCCG
CGCGTTGTTTCACTTGGCAAGGTTATACGGACAAATGAGTGTGTATGGAG
GTCCAGGAGAAGGCGCTCACAAGGAGAGGATCGATGGGAATAAAAAAAGT
TTAGAGGCTTACGAATGGATCCGAGAATTCGCGGCCGAGCAGATGGAGAG
GTTGTGGGGTCGGGACGAGGAAGGGATAGAGGAAGGGAAGGAGATGTATG
CGGAGGAGTTGGGTGTATGTAATGAGATGGTTCGGATGTTGCCGGAGAAG
ATTGCAAGGATGCATTATCAGAAGGTGGCCTTTTAGTTTTAAGATAGTGA
GGGTGGATGAGGATTTAGCGTTAGTCCCTGAGATAAGGGAAAAACTAAAG
GTACAGCAGAAATAGAATTTCATCAACCCCCCTCTTCAAGCACAAAAAGA
AGAATGCATGCTAGTTTAC back to topCoding sequence (CDS) from alignment at chr4:693126..695594- >NO04G02600.1 ID=NO04G02600.1|Name=NO04G02600.1|organism=Nannochloropsis oceanica|type=CDS|length=2097bp|location=Sequence derived from alignment at chr4:693126..695594- (Nannochloropsis oceanica)
ATGCCCCCCTTCATGCCCGCGCTGCCCCACATCGATGCCCTCCTTGCCCG
CGAGGATGACAGCAAGACCCCCTATGTCTCCAAGTACGAAGCCCGCCGTC
TTCTACAGGCATGTCAGGCCGAAAAAGGGACAGAGCTTGAGCCCGTGCTG
GGCGCTCGCATCGCTTACCGGCTCGGCAAAATAGCCCTAGACGTGGAAGA
ACCGCAGCAAGAAGCGGAGGCACATCTTAACAAGGCCTGCAACATATTCT
TTCCCGACTTGTGTTCTTGGATTGGAAGCACACAAGCACAAGCAGCAGCC
GACCAGGAAATGCAGCAGCAGCAGCAGGAGAAGCAGCATCCGCAGGGGCT
AAAGGATGATGAGGAGCCTGTTCCCCCTCTAGCAATTGGCAATGTGCTCA
AGAAGGCTCTAAACGCACCTGATCCATCAACCGGAGCAGCAGCAGCAGCA
GTAGCGGAGGAAGCAGTCGAGACGTTGAATCTGTTGGCATTGCTGATGAG
TGGAAGGGAGGAAATAGCCCAGGCTCGATTATATTTGCTGGCAGCGAAAG
AGGCGTACAGAGTGCTAGAACCCTTTTGTCCTGCCCCACCCTCTCCTAGT
ACACCTACTGCTGTGGCTGCTGCTATTGGTGACAAGAAAGAGAAAGAAAA
CACCGAGAAGGAAGAAGAAATCGCTAACAGCACGGCAGCGGGCGAAAGCG
CCCGCAGTAACTCGATCCCCAACCCCAACTCAAGATTTCGTCGCCTTATC
GACGACCATCACACGCACTCCCTTTATTATCTTGCCCAGATCTACGGCCA
GCTCAAGCAGGCCGATGCCTCGGCCTGGTATTGCTATCAAACGTTGGCAA
AGCAGGTGGAGTGGGAAGAGGGAAGGTTGGACGTATGGGGATGGGTGAGC
AATTGCATGAGTCTGATTGATTACTTGGTGGGGGTAAGGGGGGACAGAGA
GGCCGCGGCACGGTGCTTGCATGCGTGTAGTGTGCTGTTGACGAGGGACA
AGGAGGGGGAGGAGGGTTGGGCGGGGCAGGAGAAGAGTATGTTCATAAGG
GCTGATATACATAGGAGGTGGGCGGCTTTGTATTGTTCGACTTTGCAGGA
AGCGGCGGAGAGGGTTGAAGAAGAGGAGACGGGGGCGGCTAGAATGGAGA
GAAGAGAGGAGAGTGCAATATCAGTGGCATTTGTCGTGCATTTTCCCACC
CTAGAGACTGCCCTCGCTGGTGGTAATAGTGCTGCTCCTCCGGCTTCTCT
CCCCCAGCCAAAGGCCATCAATACGTTTGCGGAGGCTCGATTCGTGTTTT
TGCTGGCACAGAAGCACTTGGATGCCGCCCTTGAATTCTTTAAGTTGGAC
GGACATGTGACCGACCACGTTCATCTTATGAGAGCCGTGAGTCGACTATA
CCGTGACTTATCTTTGTTTGAGACGGACGAGAAACGCCGCCAGGCCATGT
TCTTACGGAGGGCCAACGCTCTGCAGCCGCTGGTAGACCAATTGAATCCC
CGCGCTTATGTGGGTTTGTCAAAGATGTTGTTGTTTGAATTGGGGGAAGT
TTATTTGACATTGTTGGAGGTGAAGAGTGCTAGGATCGAGCAAAAATTGA
AGGGAGGTCGAGGGAGGGAGAGAGGAAAGGGAGGCGCTTGTATGCCAAGT
AAGGCGGACGGCGAGAAATGCGACGAGTACTGTCGGTTGGCTATTGGAGC
GTTTGAAGGCTTTGTGGCTTTGTATCAAAAAGACCCCGAGGGAGGGAGGG
AGGGAGGGAAGGCGGTAGTGTGGGATTTGCCTAGCAAGGATGATTTTAAA
CCTGTTTTCCGCGCGTTGTTTCACTTGGCAAGGTTATACGGACAAATGAG
TGTGTATGGAGGTCCAGGAGAAGGCGCTCACAAGGAGAGGATCGATGGGA
ATAAAAAAAGTTTAGAGGCTTACGAATGGATCCGAGAATTCGCGGCCGAG
CAGATGGAGAGGTTGTGGGGTCGGGACGAGGAAGGGATAGAGGAAGGGAA
GGAGATGTATGCGGAGGAGTTGGGTGTATGTAATGAGATGGTTCGGATGT
TGCCGGAGAAGATTGCAAGGATGCATTATCAGAAGGTGGCCTTTTAG back to top
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