NO04G02590.1, NO04G02590.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO04G02590.1
Unique NameNO04G02590.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1623
Alignment locationchr4:691413..693035 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:691413..693035 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO04G02590.1 vs.
Match: EWM28648.1 (hypothetical protein Naga_100177g20 [Nannochloropsis gaditana])

HSP 1 Score: 389.0 bits (998), Expect = 2.300e-104
Identity = 233/469 (49.68%), Postives = 290/469 (61.83%), Query Frame = 0 
Query:   84 TSPFSTHAAPSPTEAHTLGLYDRELLCELMDLRSSFDVVPRSRYSAARWESNQYECLSKPGCNPFLNRSALKLANINMIMPLTPVSLPSTAL----SPVSMTFVDLCGGPGGFSEYLLRRQGPAAEVHGWGMTLENCDCPWDRHKLADWIVEEDEEGESEKDEDKDENGDNHAPASKRRKTAPAMA----RTLRFCYGQDRRGDLCRPENIQYLRAFLPGRVDVVVADGGFAEARARFDQEAMMLPLLVSEVSAMFYILRKGGLFVCKFFDVTLPATVQLIGLLGLLFESVAIVKPVTSRPASSERYVLGRGFRGEGGENEQ-----NKEVALLLEKMFARVQAGQTDGLSEEEEEEGNEGGVATSLGNLLAPGSAFAAWLRIVNNSLMRAQIKACYAIHEKLNTKDEEEEEEVQREGDVVVGCQEKEEQKQEQEQKEQETEKETKKREKEKETMDMEAYRRLWDLDRI 540
            +SP      PS        +YDR   CELMDLRSSF+ VPR+R+SAAR  SN YE L     NPFLNRSALKLANI+ I+PL PV L S  +    S  + TF+DLCGGPGGFSEYLLRRQ    EVHGWGMTL +C C WDR KL +WIV+E+++     +   +E+  +    SKRRK   A+A    R L   YG D  GDLC+P+N+Q+L   +  RVDVVVADGGFA AR RFDQEA MLPLL+SE SAM   L+  G FVCKFFD+TLP TVQL+ LL LLFE V +VKPV SRPASSERY LG+GFRG   E  +      ++  +LL +M A   AGQT G   +  E G +  + TS+   LA GS F AWLR VN+ LMR+Q++ACYAIH +L                               E +E E E E    E+E+  +D+++YR++W LD++
Sbjct:   53 SSPGIGAKKPSQASRADDDVYDRNSFCELMDLRSSFNAVPRARFSAARSASNMYEPLGTAAQNPFLNRSALKLANIDAIIPLKPV-LVSQGMDVEDSLPTFTFLDLCGGPGGFSEYLLRRQDLVKEVHGWGMTLCDCKCGWDRGKLGEWIVDENKKNARTFESTPNEDHQSGIFPSKRRKCMSALASLQTRALHLVYGSDGSGDLCQPDNVQFLADSMAVRVDVVVADGGFAGARGRFDQEAAMLPLLISEASAMVQTLQPKGCFVCKFFDMTLPGTVQLVALLALLFERVTVVKPVMSRPASSERYFLGQGFRGFDEEESKEGAVSTRQARVLLNEMLALATAGQTCGTPVDGGEGGGQ-ALITSMRQALARGSPFVAWLRAVNDKLMRSQVEACYAIHARL-------------------------------EMEEGEGEGERSAHEEEENAIDVDSYRQIWGLDKL 488
The following BLAST results are available for this feature:
BLAST of NO04G02590.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28648.12.300e-10449.68hypothetical protein Naga_100177g20 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO04G02590NO04G02590Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO04G02590.1NO04G02590.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO04G02590.1.cds1NO04G02590.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO04G02590.1 ID=NO04G02590.1|Name=NO04G02590.1|organism=Nannochloropsis oceanica|type=mRNA|length=1623bp
ATGAATCAAGAGCCACCACCACCCCGCCAGATTCATTGCGTTCTGGGCCC
CGCCGATTTTGTGCAATTGCGCTCGTCGCTCATCCTCGACATCGATCAAA
ACGGCGTGGTCTGGGTGTCCTTGCCGTCACCAGCAGCAGCAGCAGCAGCA
GCAAAAACAGCAGCAGCAGTGGCAGCAACAACATCTACAAAGCCAACTAC
TACTACTTCTTCCACATCTACTACCATATCAACGACAATACCCATATTGA
CCTCCCCATTCTCGACACATGCTGCTCCATCTCCGACAGAGGCACACACA
TTAGGGTTGTACGACAGAGAATTGCTGTGTGAATTGATGGATCTGCGCTC
CTCCTTTGACGTAGTACCTCGCTCTCGCTACTCGGCTGCCCGCTGGGAAA
GCAACCAGTACGAATGCCTCAGCAAGCCAGGTTGTAACCCATTTTTGAAT
CGCTCTGCCCTAAAGCTTGCCAATATAAATATGATTATGCCTTTGACACC
GGTCTCACTCCCTTCGACCGCTTTGTCACCTGTATCAATGACCTTTGTAG
ACTTATGTGGTGGACCTGGTGGCTTTTCCGAGTACTTATTACGACGCCAG
GGTCCTGCAGCAGAGGTGCATGGCTGGGGCATGACCTTAGAAAACTGCGA
CTGTCCATGGGATCGACATAAATTGGCAGATTGGATCGTGGAAGAGGATG
AGGAGGGCGAAAGCGAGAAGGACGAGGATAAGGACGAGAATGGCGACAAC
CATGCACCTGCTAGCAAACGGCGGAAGACAGCGCCGGCAATGGCACGGAC
TTTGCGCTTCTGCTATGGCCAAGACAGGCGAGGCGATCTCTGTCGGCCCG
AGAACATCCAGTATCTTCGTGCTTTCCTGCCGGGGAGGGTCGACGTGGTT
GTAGCCGACGGGGGATTCGCGGAAGCCCGGGCTCGCTTTGATCAAGAAGC
GATGATGTTGCCTTTATTGGTTAGTGAGGTCTCTGCCATGTTCTATATTC
TGAGAAAAGGCGGGTTATTTGTGTGTAAATTCTTTGATGTGACCTTGCCA
GCGACTGTGCAGTTGATTGGACTGTTGGGATTATTGTTTGAGAGCGTGGC
GATCGTGAAGCCGGTGACAAGCCGACCAGCGAGTTCGGAGAGGTACGTTT
TGGGGCGAGGATTCAGAGGAGAAGGAGGAGAAAACGAGCAAAACAAAGAG
GTTGCGCTGCTGCTTGAGAAGATGTTTGCACGGGTGCAGGCAGGGCAGAC
GGATGGGTTGTCGGAGGAGGAGGAGGAGGAAGGGAATGAGGGAGGGGTGG
CGACGTCCTTGGGGAACTTATTGGCCCCTGGGTCGGCTTTCGCTGCTTGG
CTGCGGATTGTAAATAATAGCTTAATGCGTGCACAGATTAAGGCTTGTTA
TGCTATTCACGAGAAATTAAACACGAAGGATGAGGAAGAGGAGGAGGAAG
TGCAACGAGAAGGAGATGTAGTTGTGGGGTGTCAAGAAAAGGAGGAGCAG
AAGCAGGAGCAGGAGCAGAAGGAGCAGGAAACGGAAAAAGAGACAAAGAA
GAGAGAGAAGGAAAAGGAGACAATGGACATGGAGGCATATCGACGGTTGT
GGGACTTGGACAGAATTCTCTAA
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protein sequence of NO04G02590.1

>NO04G02590.1-protein ID=NO04G02590.1-protein|Name=NO04G02590.1|organism=Nannochloropsis oceanica|type=polypeptide|length=541bp
MNQEPPPPRQIHCVLGPADFVQLRSSLILDIDQNGVVWVSLPSPAAAAAA
AKTAAAVAATTSTKPTTTTSSTSTTISTTIPILTSPFSTHAAPSPTEAHT
LGLYDRELLCELMDLRSSFDVVPRSRYSAARWESNQYECLSKPGCNPFLN
RSALKLANINMIMPLTPVSLPSTALSPVSMTFVDLCGGPGGFSEYLLRRQ
GPAAEVHGWGMTLENCDCPWDRHKLADWIVEEDEEGESEKDEDKDENGDN
HAPASKRRKTAPAMARTLRFCYGQDRRGDLCRPENIQYLRAFLPGRVDVV
VADGGFAEARARFDQEAMMLPLLVSEVSAMFYILRKGGLFVCKFFDVTLP
ATVQLIGLLGLLFESVAIVKPVTSRPASSERYVLGRGFRGEGGENEQNKE
VALLLEKMFARVQAGQTDGLSEEEEEEGNEGGVATSLGNLLAPGSAFAAW
LRIVNNSLMRAQIKACYAIHEKLNTKDEEEEEEVQREGDVVVGCQEKEEQ
KQEQEQKEQETEKETKKREKEKETMDMEAYRRLWDLDRIL*
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mRNA from alignment at chr4:691413..693035+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO04G02590.1 ID=NO04G02590.1|Name=NO04G02590.1|organism=Nannochloropsis oceanica|type=mRNA|length=1623bp|location=Sequence derived from alignment at chr4:691413..693035+ (Nannochloropsis oceanica)
ATGAATCAAGAGCCACCACCACCCCGCCAGATTCATTGCGTTCTGGGCCC
CGCCGATTTTGTGCAATTGCGCTCGTCGCTCATCCTCGACATCGATCAAA
ACGGCGTGGTCTGGGTGTCCTTGCCGTCACCAGCAGCAGCAGCAGCAGCA
GCAAAAACAGCAGCAGCAGTGGCAGCAACAACATCTACAAAGCCAACTAC
TACTACTTCTTCCACATCTACTACCATATCAACGACAATACCCATATTGA
CCTCCCCATTCTCGACACATGCTGCTCCATCTCCGACAGAGGCACACACA
TTAGGGTTGTACGACAGAGAATTGCTGTGTGAATTGATGGATCTGCGCTC
CTCCTTTGACGTAGTACCTCGCTCTCGCTACTCGGCTGCCCGCTGGGAAA
GCAACCAGTACGAATGCCTCAGCAAGCCAGGTTGTAACCCATTTTTGAAT
CGCTCTGCCCTAAAGCTTGCCAATATAAATATGATTATGCCTTTGACACC
GGTCTCACTCCCTTCGACCGCTTTGTCACCTGTATCAATGACCTTTGTAG
ACTTATGTGGTGGACCTGGTGGCTTTTCCGAGTACTTATTACGACGCCAG
GGTCCTGCAGCAGAGGTGCATGGCTGGGGCATGACCTTAGAAAACTGCGA
CTGTCCATGGGATCGACATAAATTGGCAGATTGGATCGTGGAAGAGGATG
AGGAGGGCGAAAGCGAGAAGGACGAGGATAAGGACGAGAATGGCGACAAC
CATGCACCTGCTAGCAAACGGCGGAAGACAGCGCCGGCAATGGCACGGAC
TTTGCGCTTCTGCTATGGCCAAGACAGGCGAGGCGATCTCTGTCGGCCCG
AGAACATCCAGTATCTTCGTGCTTTCCTGCCGGGGAGGGTCGACGTGGTT
GTAGCCGACGGGGGATTCGCGGAAGCCCGGGCTCGCTTTGATCAAGAAGC
GATGATGTTGCCTTTATTGGTTAGTGAGGTCTCTGCCATGTTCTATATTC
TGAGAAAAGGCGGGTTATTTGTGTGTAAATTCTTTGATGTGACCTTGCCA
GCGACTGTGCAGTTGATTGGACTGTTGGGATTATTGTTTGAGAGCGTGGC
GATCGTGAAGCCGGTGACAAGCCGACCAGCGAGTTCGGAGAGGTACGTTT
TGGGGCGAGGATTCAGAGGAGAAGGAGGAGAAAACGAGCAAAACAAAGAG
GTTGCGCTGCTGCTTGAGAAGATGTTTGCACGGGTGCAGGCAGGGCAGAC
GGATGGGTTGTCGGAGGAGGAGGAGGAGGAAGGGAATGAGGGAGGGGTGG
CGACGTCCTTGGGGAACTTATTGGCCCCTGGGTCGGCTTTCGCTGCTTGG
CTGCGGATTGTAAATAATAGCTTAATGCGTGCACAGATTAAGGCTTGTTA
TGCTATTCACGAGAAATTAAACACGAAGGATGAGGAAGAGGAGGAGGAAG
TGCAACGAGAAGGAGATGTAGTTGTGGGGTGTCAAGAAAAGGAGGAGCAG
AAGCAGGAGCAGGAGCAGAAGGAGCAGGAAACGGAAAAAGAGACAAAGAA
GAGAGAGAAGGAAAAGGAGACAATGGACATGGAGGCATATCGACGGTTGT
GGGACTTGGACAGAATTCTCTAA
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Coding sequence (CDS) from alignment at chr4:691413..693035+

>NO04G02590.1 ID=NO04G02590.1|Name=NO04G02590.1|organism=Nannochloropsis oceanica|type=CDS|length=1623bp|location=Sequence derived from alignment at chr4:691413..693035+ (Nannochloropsis oceanica)
ATGAATCAAGAGCCACCACCACCCCGCCAGATTCATTGCGTTCTGGGCCC
CGCCGATTTTGTGCAATTGCGCTCGTCGCTCATCCTCGACATCGATCAAA
ACGGCGTGGTCTGGGTGTCCTTGCCGTCACCAGCAGCAGCAGCAGCAGCA
GCAAAAACAGCAGCAGCAGTGGCAGCAACAACATCTACAAAGCCAACTAC
TACTACTTCTTCCACATCTACTACCATATCAACGACAATACCCATATTGA
CCTCCCCATTCTCGACACATGCTGCTCCATCTCCGACAGAGGCACACACA
TTAGGGTTGTACGACAGAGAATTGCTGTGTGAATTGATGGATCTGCGCTC
CTCCTTTGACGTAGTACCTCGCTCTCGCTACTCGGCTGCCCGCTGGGAAA
GCAACCAGTACGAATGCCTCAGCAAGCCAGGTTGTAACCCATTTTTGAAT
CGCTCTGCCCTAAAGCTTGCCAATATAAATATGATTATGCCTTTGACACC
GGTCTCACTCCCTTCGACCGCTTTGTCACCTGTATCAATGACCTTTGTAG
ACTTATGTGGTGGACCTGGTGGCTTTTCCGAGTACTTATTACGACGCCAG
GGTCCTGCAGCAGAGGTGCATGGCTGGGGCATGACCTTAGAAAACTGCGA
CTGTCCATGGGATCGACATAAATTGGCAGATTGGATCGTGGAAGAGGATG
AGGAGGGCGAAAGCGAGAAGGACGAGGATAAGGACGAGAATGGCGACAAC
CATGCACCTGCTAGCAAACGGCGGAAGACAGCGCCGGCAATGGCACGGAC
TTTGCGCTTCTGCTATGGCCAAGACAGGCGAGGCGATCTCTGTCGGCCCG
AGAACATCCAGTATCTTCGTGCTTTCCTGCCGGGGAGGGTCGACGTGGTT
GTAGCCGACGGGGGATTCGCGGAAGCCCGGGCTCGCTTTGATCAAGAAGC
GATGATGTTGCCTTTATTGGTTAGTGAGGTCTCTGCCATGTTCTATATTC
TGAGAAAAGGCGGGTTATTTGTGTGTAAATTCTTTGATGTGACCTTGCCA
GCGACTGTGCAGTTGATTGGACTGTTGGGATTATTGTTTGAGAGCGTGGC
GATCGTGAAGCCGGTGACAAGCCGACCAGCGAGTTCGGAGAGGTACGTTT
TGGGGCGAGGATTCAGAGGAGAAGGAGGAGAAAACGAGCAAAACAAAGAG
GTTGCGCTGCTGCTTGAGAAGATGTTTGCACGGGTGCAGGCAGGGCAGAC
GGATGGGTTGTCGGAGGAGGAGGAGGAGGAAGGGAATGAGGGAGGGGTGG
CGACGTCCTTGGGGAACTTATTGGCCCCTGGGTCGGCTTTCGCTGCTTGG
CTGCGGATTGTAAATAATAGCTTAATGCGTGCACAGATTAAGGCTTGTTA
TGCTATTCACGAGAAATTAAACACGAAGGATGAGGAAGAGGAGGAGGAAG
TGCAACGAGAAGGAGATGTAGTTGTGGGGTGTCAAGAAAAGGAGGAGCAG
AAGCAGGAGCAGGAGCAGAAGGAGCAGGAAACGGAAAAAGAGACAAAGAA
GAGAGAGAAGGAAAAGGAGACAATGGACATGGAGGCATATCGACGGTTGT
GGGACTTGGACAGAATTCTCTAA
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Synonyms
Publications