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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr4 | genome | chr4:687237..689519 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO04G02580.1 vs.
Match: CBN78905.1 (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 342.8 bits (878), Expect = 2.700e-90 Identity = 187/494 (37.85%), Postives = 273/494 (55.26%), Query Frame = 0
Query: 1 MLGHGLVPDLKTVKTIMRTCVKKLAWRRAVQLLH---TTGLPLDVVIFTMAINTCGKAGEWEQGLRVLREMDSEEAKAHGIVPNEVSYGTAISACGKAGRWELALSLLNEVKDRGLLLNDVCYGGAIDACGRAGQWQEALKLLNEMTLDGVAANEVCYNSAISACGKAGEWEKAVALLREMRERGLTPDELNYNSAISACGKAAQWAHAIRLLREMAVQGLCPDVVSYGAAIDACRKAGKYDRGLALLGEMRQVGLVPNEVCYHSAVTACSEAGRWNEALFVLSEMVKQGLKPDAISYNAAVEACAKSGKWDALVILL---QETARDPDTTLLDAVYNNAVITCAKYGNWELAATVLQEMEYLGGNGGSGAGTPGGSNSSSHPGLSPTSASYSAVIDACAKALAAAGAAGDGSPSSFNPPPPGGLPQWELILSKLDRMREKGLLPDSSSYNAAVRACVCGPAKHWKKAVDLLQEMASKGYLVDQSTSNAVMQAC 489
M +VPD + + ++ C + W R + LL + GL D + + I CGK G+W++ L VL EM A G+ P +SY AI ACG++GRW+ A+ +L +++ +G+ + + Y AI ACG GQW+ ++ LL+EM GVA N + +NSAI ACGK G+WEKAV LLRE+ GLTPD ++NSAI+AC K+ +W A+ LL+EM + L PD +SY +AI+AC K G+++ L L +M GL PN + + A+ AC E GRW E L +L +M QGL P+ I+YN+A++ C K G+W+ + LL +E A PD+ YN+A+ C+K G W+ A +L+EM PG GL+P SY+A IDA K QWE + L +M KGL P+ +YN+ ++A CG W+KA+DLL+E+ D + N + AC
Sbjct: 206 MADREVVPDEISYNSAIKACGRGGQWERVIGLLREMPSVGLTPDAITYNSVITGCGKEGQWKEALSVLTEMS-----AKGLTPETISYNMAIRACGRSGRWKEAVEVLRQMESQGVTPDVISYDAAIKACGGGGQWETSVDLLDEMAGRGVAPNTIHFNSAIVACGKGGQWEKAVELLREVTALGLTPDATSFNSAIAACTKSGRWKEALELLKEMPAKRLKPDAISYNSAIEACGKGGQWEMALELRRQMPTKGLTPNVISSNIAIRACGERGRWQEGLELLRQMPAQGLTPNVITYNSAIKTCGKGGQWEKALDLLAKMKELAMTPDS----ITYNSAIAACSKRGRWKEAVALLREM-------------PG-------QGLTPDVISYTAAIDAYGKN-----------------------GQWERAVELLRQMPTKGLTPNVITYNSVIKA--CGRGGEWEKALDLLKELKETAVAPDLMSYNLAISAC 645
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO04G02580.1 ID=NO04G02580.1|Name=NO04G02580.1|organism=Nannochloropsis oceanica|type=mRNA|length=2283bp ATGCTGGGGCATGGGCTGGTGCCGGACCTGAAGACGGTGAAGACCATCAT GCGGACATGCGTGAAGAAGCTGGCCTGGCGACGGGCGGTGCAGCTGCTGC ACACAACAGGCCTGCCGCTGGACGTGGTCATCTTCACAATGGCTATCAAC ACTTGCGGTAAGGCCGGAGAGTGGGAGCAGGGCCTGCGGGTGCTGCGGGA GATGGACTCTGAGGAGGCCAAGGCCCACGGCATCGTGCCCAACGAGGTGA GCTACGGGACGGCCATCTCGGCTTGCGGCAAGGCGGGCCGGTGGGAGCTG GCGCTCTCGCTCTTAAACGAGGTCAAGGATCGCGGCCTGCTCCTCAATGA TGTTTGTTACGGCGGGGCAATTGATGCCTGCGGGCGCGCGGGTCAGTGGC AGGAGGCACTCAAGCTCCTGAATGAGATGACGCTGGACGGGGTGGCGGCC AATGAGGTGTGCTACAACTCGGCCATCTCCGCCTGCGGCAAGGCCGGGGA GTGGGAGAAGGCGGTGGCTTTGTTGCGCGAGATGCGGGAGCGGGGCCTGA CGCCCGACGAGCTGAACTACAACTCCGCTATCTCGGCCTGCGGCAAGGCG GCCCAGTGGGCGCACGCCATTCGCCTGCTCCGCGAGATGGCCGTACAAGG GTTGTGCCCGGATGTGGTGTCCTACGGGGCGGCCATCGATGCCTGCCGTA AGGCCGGCAAGTACGACCGAGGCCTGGCGCTGCTGGGCGAGATGCGCCAG GTGGGCCTGGTGCCCAACGAGGTTTGCTACCACTCGGCGGTCACGGCCTG CTCCGAGGCAGGCCGGTGGAATGAGGCCCTGTTTGTGCTCTCGGAGATGG TCAAGCAAGGCCTCAAGCCGGATGCCATCAGCTACAATGCGGCTGTGGAG GCCTGCGCCAAGTCGGGAAAGTGGGACGCCCTGGTCATCCTGCTGCAGGA GACGGCTCGGGACCCGGACACCACACTTTTGGATGCCGTCTACAACAATG CCGTCATAACCTGCGCCAAGTACGGCAACTGGGAGTTGGCGGCCACCGTG CTGCAGGAGATGGAGTATTTGGGTGGGAATGGTGGAAGTGGGGCGGGGAC GCCGGGCGGCAGCAATAGCAGCAGTCATCCGGGCTTGTCGCCCACCTCGG CCTCCTACTCTGCGGTCATTGACGCTTGTGCCAAGGCCCTGGCCGCCGCA GGAGCAGCAGGTGACGGGAGCCCATCCTCTTTCAACCCTCCCCCTCCCGG TGGCCTGCCCCAGTGGGAGCTGATCCTGAGCAAGCTTGACCGCATGCGTG AGAAGGGCCTGCTGCCCGACTCCAGCTCGTACAACGCGGCCGTACGCGCC TGTGTCTGCGGGCCAGCCAAGCACTGGAAGAAGGCCGTGGATTTGCTGCA GGAGATGGCCTCAAAGGGCTACCTAGTCGACCAGAGTACCTCGAACGCCG TCATGCAGGCCTGCACTGCTGGCGTTGCCGGCGCTGCGGGTAGTGATGCT GCGGATGAGGCAGTTGTATCATCAACAGCCGCGGGAGGGATGGGCAGACC CGACGAGACCCATGCTGCAGCAGAACGTGAGAGGGCCTTGGCACTCCTCC GCAAGATGATGGCAGGCGGCTCACCTTTTGACAGCACCAGTAGCGAGTCC TCAGGTGTGCCTTCTGGCCCTCCTGCTGCTCTTCTTTCCGCTGTGTCTTC CTCCCGCACTTCTACAGGACTGGGCTCCGGTGCTCCCTCCTTAGCGTCTT CCACCTCTTGCCTATTGCTTAACTCACACGGAGGAGACTCGTTTGTCGAG AGTGGGCAAGCCCCACTTTGGGAACGGACAACCAGTATCCCCGACGAAAT TGCACTCACGAGTGGAAGCAGCGTGATTGGAGAAGTCGGTGGTCTCGTGC TTGGTGGTGACCTCGCAGAGATCCTTGGCCCTTCCTCCCCGACGGGCCCG GAATCCCCGCGACCGGTGGGGTTGATCGGCAGTCCATCTTTCAGTTCTAT TCCAGCTTCATCGACGGTTGCATATCCTCGGTCGCCTGCTATGGCGTTAG GACCTGGGAGTCCATTTTTGAGCGCGACTAAAGGTAGCAGCACCGAGAAT GATGGGAATGGAGGAGGAAGGATGGGAAGCTTCTTGTTGCAAGCGGCGCG GCACAAGCCGACAGAGCAGAAGGTCGAAGTTGTGACGGGGGATAGTGATG GGGAGGGAAGAGCCCCTGGTGATGGTGCGATGGAAAGTGAGAAAGCGGTG GGCGTTTTAAATTCAGGATGGAGCCAGTCGTAA back to topprotein sequence of NO04G02580.1 >NO04G02580.1-protein ID=NO04G02580.1-protein|Name=NO04G02580.1|organism=Nannochloropsis oceanica|type=polypeptide|length=761bp MLGHGLVPDLKTVKTIMRTCVKKLAWRRAVQLLHTTGLPLDVVIFTMAIN TCGKAGEWEQGLRVLREMDSEEAKAHGIVPNEVSYGTAISACGKAGRWEL ALSLLNEVKDRGLLLNDVCYGGAIDACGRAGQWQEALKLLNEMTLDGVAA NEVCYNSAISACGKAGEWEKAVALLREMRERGLTPDELNYNSAISACGKA AQWAHAIRLLREMAVQGLCPDVVSYGAAIDACRKAGKYDRGLALLGEMRQ VGLVPNEVCYHSAVTACSEAGRWNEALFVLSEMVKQGLKPDAISYNAAVE ACAKSGKWDALVILLQETARDPDTTLLDAVYNNAVITCAKYGNWELAATV LQEMEYLGGNGGSGAGTPGGSNSSSHPGLSPTSASYSAVIDACAKALAAA GAAGDGSPSSFNPPPPGGLPQWELILSKLDRMREKGLLPDSSSYNAAVRA CVCGPAKHWKKAVDLLQEMASKGYLVDQSTSNAVMQACTAGVAGAAGSDA ADEAVVSSTAAGGMGRPDETHAAAERERALALLRKMMAGGSPFDSTSSES SGVPSGPPAALLSAVSSSRTSTGLGSGAPSLASSTSCLLLNSHGGDSFVE SGQAPLWERTTSIPDEIALTSGSSVIGEVGGLVLGGDLAEILGPSSPTGP ESPRPVGLIGSPSFSSIPASSTVAYPRSPAMALGPGSPFLSATKGSSTEN DGNGGGRMGSFLLQAARHKPTEQKVEVVTGDSDGEGRAPGDGAMESEKAV GVLNSGWSQS* back to topmRNA from alignment at chr4:687237..689519+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO04G02580.1 ID=NO04G02580.1|Name=NO04G02580.1|organism=Nannochloropsis oceanica|type=mRNA|length=2283bp|location=Sequence derived from alignment at chr4:687237..689519+ (Nannochloropsis oceanica) ATGCTGGGGCATGGGCTGGTGCCGGACCTGAAGACGGTGAAGACCATCAT
GCGGACATGCGTGAAGAAGCTGGCCTGGCGACGGGCGGTGCAGCTGCTGC
ACACAACAGGCCTGCCGCTGGACGTGGTCATCTTCACAATGGCTATCAAC
ACTTGCGGTAAGGCCGGAGAGTGGGAGCAGGGCCTGCGGGTGCTGCGGGA
GATGGACTCTGAGGAGGCCAAGGCCCACGGCATCGTGCCCAACGAGGTGA
GCTACGGGACGGCCATCTCGGCTTGCGGCAAGGCGGGCCGGTGGGAGCTG
GCGCTCTCGCTCTTAAACGAGGTCAAGGATCGCGGCCTGCTCCTCAATGA
TGTTTGTTACGGCGGGGCAATTGATGCCTGCGGGCGCGCGGGTCAGTGGC
AGGAGGCACTCAAGCTCCTGAATGAGATGACGCTGGACGGGGTGGCGGCC
AATGAGGTGTGCTACAACTCGGCCATCTCCGCCTGCGGCAAGGCCGGGGA
GTGGGAGAAGGCGGTGGCTTTGTTGCGCGAGATGCGGGAGCGGGGCCTGA
CGCCCGACGAGCTGAACTACAACTCCGCTATCTCGGCCTGCGGCAAGGCG
GCCCAGTGGGCGCACGCCATTCGCCTGCTCCGCGAGATGGCCGTACAAGG
GTTGTGCCCGGATGTGGTGTCCTACGGGGCGGCCATCGATGCCTGCCGTA
AGGCCGGCAAGTACGACCGAGGCCTGGCGCTGCTGGGCGAGATGCGCCAG
GTGGGCCTGGTGCCCAACGAGGTTTGCTACCACTCGGCGGTCACGGCCTG
CTCCGAGGCAGGCCGGTGGAATGAGGCCCTGTTTGTGCTCTCGGAGATGG
TCAAGCAAGGCCTCAAGCCGGATGCCATCAGCTACAATGCGGCTGTGGAG
GCCTGCGCCAAGTCGGGAAAGTGGGACGCCCTGGTCATCCTGCTGCAGGA
GACGGCTCGGGACCCGGACACCACACTTTTGGATGCCGTCTACAACAATG
CCGTCATAACCTGCGCCAAGTACGGCAACTGGGAGTTGGCGGCCACCGTG
CTGCAGGAGATGGAGTATTTGGGTGGGAATGGTGGAAGTGGGGCGGGGAC
GCCGGGCGGCAGCAATAGCAGCAGTCATCCGGGCTTGTCGCCCACCTCGG
CCTCCTACTCTGCGGTCATTGACGCTTGTGCCAAGGCCCTGGCCGCCGCA
GGAGCAGCAGGTGACGGGAGCCCATCCTCTTTCAACCCTCCCCCTCCCGG
TGGCCTGCCCCAGTGGGAGCTGATCCTGAGCAAGCTTGACCGCATGCGTG
AGAAGGGCCTGCTGCCCGACTCCAGCTCGTACAACGCGGCCGTACGCGCC
TGTGTCTGCGGGCCAGCCAAGCACTGGAAGAAGGCCGTGGATTTGCTGCA
GGAGATGGCCTCAAAGGGCTACCTAGTCGACCAGAGTACCTCGAACGCCG
TCATGCAGGCCTGCACTGCTGGCGTTGCCGGCGCTGCGGGTAGTGATGCT
GCGGATGAGGCAGTTGTATCATCAACAGCCGCGGGAGGGATGGGCAGACC
CGACGAGACCCATGCTGCAGCAGAACGTGAGAGGGCCTTGGCACTCCTCC
GCAAGATGATGGCAGGCGGCTCACCTTTTGACAGCACCAGTAGCGAGTCC
TCAGGTGTGCCTTCTGGCCCTCCTGCTGCTCTTCTTTCCGCTGTGTCTTC
CTCCCGCACTTCTACAGGACTGGGCTCCGGTGCTCCCTCCTTAGCGTCTT
CCACCTCTTGCCTATTGCTTAACTCACACGGAGGAGACTCGTTTGTCGAG
AGTGGGCAAGCCCCACTTTGGGAACGGACAACCAGTATCCCCGACGAAAT
TGCACTCACGAGTGGAAGCAGCGTGATTGGAGAAGTCGGTGGTCTCGTGC
TTGGTGGTGACCTCGCAGAGATCCTTGGCCCTTCCTCCCCGACGGGCCCG
GAATCCCCGCGACCGGTGGGGTTGATCGGCAGTCCATCTTTCAGTTCTAT
TCCAGCTTCATCGACGGTTGCATATCCTCGGTCGCCTGCTATGGCGTTAG
GACCTGGGAGTCCATTTTTGAGCGCGACTAAAGGTAGCAGCACCGAGAAT
GATGGGAATGGAGGAGGAAGGATGGGAAGCTTCTTGTTGCAAGCGGCGCG
GCACAAGCCGACAGAGCAGAAGGTCGAAGTTGTGACGGGGGATAGTGATG
GGGAGGGAAGAGCCCCTGGTGATGGTGCGATGGAAAGTGAGAAAGCGGTG
GGCGTTTTAAATTCAGGATGGAGCCAGTCGTAA back to topCoding sequence (CDS) from alignment at chr4:687237..689519+ >NO04G02580.1 ID=NO04G02580.1|Name=NO04G02580.1|organism=Nannochloropsis oceanica|type=CDS|length=2283bp|location=Sequence derived from alignment at chr4:687237..689519+ (Nannochloropsis oceanica) ATGCTGGGGCATGGGCTGGTGCCGGACCTGAAGACGGTGAAGACCATCAT GCGGACATGCGTGAAGAAGCTGGCCTGGCGACGGGCGGTGCAGCTGCTGC ACACAACAGGCCTGCCGCTGGACGTGGTCATCTTCACAATGGCTATCAAC ACTTGCGGTAAGGCCGGAGAGTGGGAGCAGGGCCTGCGGGTGCTGCGGGA GATGGACTCTGAGGAGGCCAAGGCCCACGGCATCGTGCCCAACGAGGTGA GCTACGGGACGGCCATCTCGGCTTGCGGCAAGGCGGGCCGGTGGGAGCTG GCGCTCTCGCTCTTAAACGAGGTCAAGGATCGCGGCCTGCTCCTCAATGA TGTTTGTTACGGCGGGGCAATTGATGCCTGCGGGCGCGCGGGTCAGTGGC AGGAGGCACTCAAGCTCCTGAATGAGATGACGCTGGACGGGGTGGCGGCC AATGAGGTGTGCTACAACTCGGCCATCTCCGCCTGCGGCAAGGCCGGGGA GTGGGAGAAGGCGGTGGCTTTGTTGCGCGAGATGCGGGAGCGGGGCCTGA CGCCCGACGAGCTGAACTACAACTCCGCTATCTCGGCCTGCGGCAAGGCG GCCCAGTGGGCGCACGCCATTCGCCTGCTCCGCGAGATGGCCGTACAAGG GTTGTGCCCGGATGTGGTGTCCTACGGGGCGGCCATCGATGCCTGCCGTA AGGCCGGCAAGTACGACCGAGGCCTGGCGCTGCTGGGCGAGATGCGCCAG GTGGGCCTGGTGCCCAACGAGGTTTGCTACCACTCGGCGGTCACGGCCTG CTCCGAGGCAGGCCGGTGGAATGAGGCCCTGTTTGTGCTCTCGGAGATGG TCAAGCAAGGCCTCAAGCCGGATGCCATCAGCTACAATGCGGCTGTGGAG GCCTGCGCCAAGTCGGGAAAGTGGGACGCCCTGGTCATCCTGCTGCAGGA GACGGCTCGGGACCCGGACACCACACTTTTGGATGCCGTCTACAACAATG CCGTCATAACCTGCGCCAAGTACGGCAACTGGGAGTTGGCGGCCACCGTG CTGCAGGAGATGGAGTATTTGGGTGGGAATGGTGGAAGTGGGGCGGGGAC GCCGGGCGGCAGCAATAGCAGCAGTCATCCGGGCTTGTCGCCCACCTCGG CCTCCTACTCTGCGGTCATTGACGCTTGTGCCAAGGCCCTGGCCGCCGCA GGAGCAGCAGGTGACGGGAGCCCATCCTCTTTCAACCCTCCCCCTCCCGG TGGCCTGCCCCAGTGGGAGCTGATCCTGAGCAAGCTTGACCGCATGCGTG AGAAGGGCCTGCTGCCCGACTCCAGCTCGTACAACGCGGCCGTACGCGCC TGTGTCTGCGGGCCAGCCAAGCACTGGAAGAAGGCCGTGGATTTGCTGCA GGAGATGGCCTCAAAGGGCTACCTAGTCGACCAGAGTACCTCGAACGCCG TCATGCAGGCCTGCACTGCTGGCGTTGCCGGCGCTGCGGGTAGTGATGCT GCGGATGAGGCAGTTGTATCATCAACAGCCGCGGGAGGGATGGGCAGACC CGACGAGACCCATGCTGCAGCAGAACGTGAGAGGGCCTTGGCACTCCTCC GCAAGATGATGGCAGGCGGCTCACCTTTTGACAGCACCAGTAGCGAGTCC TCAGGTGTGCCTTCTGGCCCTCCTGCTGCTCTTCTTTCCGCTGTGTCTTC CTCCCGCACTTCTACAGGACTGGGCTCCGGTGCTCCCTCCTTAGCGTCTT CCACCTCTTGCCTATTGCTTAACTCACACGGAGGAGACTCGTTTGTCGAG AGTGGGCAAGCCCCACTTTGGGAACGGACAACCAGTATCCCCGACGAAAT TGCACTCACGAGTGGAAGCAGCGTGATTGGAGAAGTCGGTGGTCTCGTGC TTGGTGGTGACCTCGCAGAGATCCTTGGCCCTTCCTCCCCGACGGGCCCG GAATCCCCGCGACCGGTGGGGTTGATCGGCAGTCCATCTTTCAGTTCTAT TCCAGCTTCATCGACGGTTGCATATCCTCGGTCGCCTGCTATGGCGTTAG GACCTGGGAGTCCATTTTTGAGCGCGACTAAAGGTAGCAGCACCGAGAAT GATGGGAATGGAGGAGGAAGGATGGGAAGCTTCTTGTTGCAAGCGGCGCG GCACAAGCCGACAGAGCAGAAGGTCGAAGTTGTGACGGGGGATAGTGATG GGGAGGGAAGAGCCCCTGGTGATGGTGCGATGGAAAGTGAGAAAGCGGTG GGCGTTTTAAATTCAGGATGGAGCCAGTCGTAA back to top
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