NO04G02580.1, NO04G02580.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO04G02580.1
Unique NameNO04G02580.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2283
Alignment locationchr4:687237..689519 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:687237..689519 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO04G02580.1 vs.
Match: CBN78905.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 342.8 bits (878), Expect = 2.700e-90
Identity = 187/494 (37.85%), Postives = 273/494 (55.26%), Query Frame = 0
Query:    1 MLGHGLVPDLKTVKTIMRTCVKKLAWRRAVQLLH---TTGLPLDVVIFTMAINTCGKAGEWEQGLRVLREMDSEEAKAHGIVPNEVSYGTAISACGKAGRWELALSLLNEVKDRGLLLNDVCYGGAIDACGRAGQWQEALKLLNEMTLDGVAANEVCYNSAISACGKAGEWEKAVALLREMRERGLTPDELNYNSAISACGKAAQWAHAIRLLREMAVQGLCPDVVSYGAAIDACRKAGKYDRGLALLGEMRQVGLVPNEVCYHSAVTACSEAGRWNEALFVLSEMVKQGLKPDAISYNAAVEACAKSGKWDALVILL---QETARDPDTTLLDAVYNNAVITCAKYGNWELAATVLQEMEYLGGNGGSGAGTPGGSNSSSHPGLSPTSASYSAVIDACAKALAAAGAAGDGSPSSFNPPPPGGLPQWELILSKLDRMREKGLLPDSSSYNAAVRACVCGPAKHWKKAVDLLQEMASKGYLVDQSTSNAVMQAC 489
            M    +VPD  +  + ++ C +   W R + LL    + GL  D + +   I  CGK G+W++ L VL EM      A G+ P  +SY  AI ACG++GRW+ A+ +L +++ +G+  + + Y  AI ACG  GQW+ ++ LL+EM   GVA N + +NSAI ACGK G+WEKAV LLRE+   GLTPD  ++NSAI+AC K+ +W  A+ LL+EM  + L PD +SY +AI+AC K G+++  L L  +M   GL PN +  + A+ AC E GRW E L +L +M  QGL P+ I+YN+A++ C K G+W+  + LL   +E A  PD+      YN+A+  C+K G W+ A  +L+EM             PG        GL+P   SY+A IDA  K                         QWE  +  L +M  KGL P+  +YN+ ++A  CG    W+KA+DLL+E+       D  + N  + AC
Sbjct:  206 MADREVVPDEISYNSAIKACGRGGQWERVIGLLREMPSVGLTPDAITYNSVITGCGKEGQWKEALSVLTEMS-----AKGLTPETISYNMAIRACGRSGRWKEAVEVLRQMESQGVTPDVISYDAAIKACGGGGQWETSVDLLDEMAGRGVAPNTIHFNSAIVACGKGGQWEKAVELLREVTALGLTPDATSFNSAIAACTKSGRWKEALELLKEMPAKRLKPDAISYNSAIEACGKGGQWEMALELRRQMPTKGLTPNVISSNIAIRACGERGRWQEGLELLRQMPAQGLTPNVITYNSAIKTCGKGGQWEKALDLLAKMKELAMTPDS----ITYNSAIAACSKRGRWKEAVALLREM-------------PG-------QGLTPDVISYTAAIDAYGKN-----------------------GQWERAVELLRQMPTKGLTPNVITYNSVIKA--CGRGGEWEKALDLLKELKETAVAPDLMSYNLAISAC 645          
The following BLAST results are available for this feature:
BLAST of NO04G02580.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
CBN78905.12.700e-9037.85conserved unknown protein [Ectocarpus siliculosus][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO04G02580NO04G02580Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO04G02580.1NO04G02580.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO04G02580.1.cds1NO04G02580.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO04G02580.1 ID=NO04G02580.1|Name=NO04G02580.1|organism=Nannochloropsis oceanica|type=mRNA|length=2283bp
ATGCTGGGGCATGGGCTGGTGCCGGACCTGAAGACGGTGAAGACCATCAT
GCGGACATGCGTGAAGAAGCTGGCCTGGCGACGGGCGGTGCAGCTGCTGC
ACACAACAGGCCTGCCGCTGGACGTGGTCATCTTCACAATGGCTATCAAC
ACTTGCGGTAAGGCCGGAGAGTGGGAGCAGGGCCTGCGGGTGCTGCGGGA
GATGGACTCTGAGGAGGCCAAGGCCCACGGCATCGTGCCCAACGAGGTGA
GCTACGGGACGGCCATCTCGGCTTGCGGCAAGGCGGGCCGGTGGGAGCTG
GCGCTCTCGCTCTTAAACGAGGTCAAGGATCGCGGCCTGCTCCTCAATGA
TGTTTGTTACGGCGGGGCAATTGATGCCTGCGGGCGCGCGGGTCAGTGGC
AGGAGGCACTCAAGCTCCTGAATGAGATGACGCTGGACGGGGTGGCGGCC
AATGAGGTGTGCTACAACTCGGCCATCTCCGCCTGCGGCAAGGCCGGGGA
GTGGGAGAAGGCGGTGGCTTTGTTGCGCGAGATGCGGGAGCGGGGCCTGA
CGCCCGACGAGCTGAACTACAACTCCGCTATCTCGGCCTGCGGCAAGGCG
GCCCAGTGGGCGCACGCCATTCGCCTGCTCCGCGAGATGGCCGTACAAGG
GTTGTGCCCGGATGTGGTGTCCTACGGGGCGGCCATCGATGCCTGCCGTA
AGGCCGGCAAGTACGACCGAGGCCTGGCGCTGCTGGGCGAGATGCGCCAG
GTGGGCCTGGTGCCCAACGAGGTTTGCTACCACTCGGCGGTCACGGCCTG
CTCCGAGGCAGGCCGGTGGAATGAGGCCCTGTTTGTGCTCTCGGAGATGG
TCAAGCAAGGCCTCAAGCCGGATGCCATCAGCTACAATGCGGCTGTGGAG
GCCTGCGCCAAGTCGGGAAAGTGGGACGCCCTGGTCATCCTGCTGCAGGA
GACGGCTCGGGACCCGGACACCACACTTTTGGATGCCGTCTACAACAATG
CCGTCATAACCTGCGCCAAGTACGGCAACTGGGAGTTGGCGGCCACCGTG
CTGCAGGAGATGGAGTATTTGGGTGGGAATGGTGGAAGTGGGGCGGGGAC
GCCGGGCGGCAGCAATAGCAGCAGTCATCCGGGCTTGTCGCCCACCTCGG
CCTCCTACTCTGCGGTCATTGACGCTTGTGCCAAGGCCCTGGCCGCCGCA
GGAGCAGCAGGTGACGGGAGCCCATCCTCTTTCAACCCTCCCCCTCCCGG
TGGCCTGCCCCAGTGGGAGCTGATCCTGAGCAAGCTTGACCGCATGCGTG
AGAAGGGCCTGCTGCCCGACTCCAGCTCGTACAACGCGGCCGTACGCGCC
TGTGTCTGCGGGCCAGCCAAGCACTGGAAGAAGGCCGTGGATTTGCTGCA
GGAGATGGCCTCAAAGGGCTACCTAGTCGACCAGAGTACCTCGAACGCCG
TCATGCAGGCCTGCACTGCTGGCGTTGCCGGCGCTGCGGGTAGTGATGCT
GCGGATGAGGCAGTTGTATCATCAACAGCCGCGGGAGGGATGGGCAGACC
CGACGAGACCCATGCTGCAGCAGAACGTGAGAGGGCCTTGGCACTCCTCC
GCAAGATGATGGCAGGCGGCTCACCTTTTGACAGCACCAGTAGCGAGTCC
TCAGGTGTGCCTTCTGGCCCTCCTGCTGCTCTTCTTTCCGCTGTGTCTTC
CTCCCGCACTTCTACAGGACTGGGCTCCGGTGCTCCCTCCTTAGCGTCTT
CCACCTCTTGCCTATTGCTTAACTCACACGGAGGAGACTCGTTTGTCGAG
AGTGGGCAAGCCCCACTTTGGGAACGGACAACCAGTATCCCCGACGAAAT
TGCACTCACGAGTGGAAGCAGCGTGATTGGAGAAGTCGGTGGTCTCGTGC
TTGGTGGTGACCTCGCAGAGATCCTTGGCCCTTCCTCCCCGACGGGCCCG
GAATCCCCGCGACCGGTGGGGTTGATCGGCAGTCCATCTTTCAGTTCTAT
TCCAGCTTCATCGACGGTTGCATATCCTCGGTCGCCTGCTATGGCGTTAG
GACCTGGGAGTCCATTTTTGAGCGCGACTAAAGGTAGCAGCACCGAGAAT
GATGGGAATGGAGGAGGAAGGATGGGAAGCTTCTTGTTGCAAGCGGCGCG
GCACAAGCCGACAGAGCAGAAGGTCGAAGTTGTGACGGGGGATAGTGATG
GGGAGGGAAGAGCCCCTGGTGATGGTGCGATGGAAAGTGAGAAAGCGGTG
GGCGTTTTAAATTCAGGATGGAGCCAGTCGTAA
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protein sequence of NO04G02580.1

>NO04G02580.1-protein ID=NO04G02580.1-protein|Name=NO04G02580.1|organism=Nannochloropsis oceanica|type=polypeptide|length=761bp
MLGHGLVPDLKTVKTIMRTCVKKLAWRRAVQLLHTTGLPLDVVIFTMAIN
TCGKAGEWEQGLRVLREMDSEEAKAHGIVPNEVSYGTAISACGKAGRWEL
ALSLLNEVKDRGLLLNDVCYGGAIDACGRAGQWQEALKLLNEMTLDGVAA
NEVCYNSAISACGKAGEWEKAVALLREMRERGLTPDELNYNSAISACGKA
AQWAHAIRLLREMAVQGLCPDVVSYGAAIDACRKAGKYDRGLALLGEMRQ
VGLVPNEVCYHSAVTACSEAGRWNEALFVLSEMVKQGLKPDAISYNAAVE
ACAKSGKWDALVILLQETARDPDTTLLDAVYNNAVITCAKYGNWELAATV
LQEMEYLGGNGGSGAGTPGGSNSSSHPGLSPTSASYSAVIDACAKALAAA
GAAGDGSPSSFNPPPPGGLPQWELILSKLDRMREKGLLPDSSSYNAAVRA
CVCGPAKHWKKAVDLLQEMASKGYLVDQSTSNAVMQACTAGVAGAAGSDA
ADEAVVSSTAAGGMGRPDETHAAAERERALALLRKMMAGGSPFDSTSSES
SGVPSGPPAALLSAVSSSRTSTGLGSGAPSLASSTSCLLLNSHGGDSFVE
SGQAPLWERTTSIPDEIALTSGSSVIGEVGGLVLGGDLAEILGPSSPTGP
ESPRPVGLIGSPSFSSIPASSTVAYPRSPAMALGPGSPFLSATKGSSTEN
DGNGGGRMGSFLLQAARHKPTEQKVEVVTGDSDGEGRAPGDGAMESEKAV
GVLNSGWSQS*
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mRNA from alignment at chr4:687237..689519+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO04G02580.1 ID=NO04G02580.1|Name=NO04G02580.1|organism=Nannochloropsis oceanica|type=mRNA|length=2283bp|location=Sequence derived from alignment at chr4:687237..689519+ (Nannochloropsis oceanica)
ATGCTGGGGCATGGGCTGGTGCCGGACCTGAAGACGGTGAAGACCATCAT GCGGACATGCGTGAAGAAGCTGGCCTGGCGACGGGCGGTGCAGCTGCTGC ACACAACAGGCCTGCCGCTGGACGTGGTCATCTTCACAATGGCTATCAAC ACTTGCGGTAAGGCCGGAGAGTGGGAGCAGGGCCTGCGGGTGCTGCGGGA GATGGACTCTGAGGAGGCCAAGGCCCACGGCATCGTGCCCAACGAGGTGA GCTACGGGACGGCCATCTCGGCTTGCGGCAAGGCGGGCCGGTGGGAGCTG GCGCTCTCGCTCTTAAACGAGGTCAAGGATCGCGGCCTGCTCCTCAATGA TGTTTGTTACGGCGGGGCAATTGATGCCTGCGGGCGCGCGGGTCAGTGGC AGGAGGCACTCAAGCTCCTGAATGAGATGACGCTGGACGGGGTGGCGGCC AATGAGGTGTGCTACAACTCGGCCATCTCCGCCTGCGGCAAGGCCGGGGA GTGGGAGAAGGCGGTGGCTTTGTTGCGCGAGATGCGGGAGCGGGGCCTGA CGCCCGACGAGCTGAACTACAACTCCGCTATCTCGGCCTGCGGCAAGGCG GCCCAGTGGGCGCACGCCATTCGCCTGCTCCGCGAGATGGCCGTACAAGG GTTGTGCCCGGATGTGGTGTCCTACGGGGCGGCCATCGATGCCTGCCGTA AGGCCGGCAAGTACGACCGAGGCCTGGCGCTGCTGGGCGAGATGCGCCAG GTGGGCCTGGTGCCCAACGAGGTTTGCTACCACTCGGCGGTCACGGCCTG CTCCGAGGCAGGCCGGTGGAATGAGGCCCTGTTTGTGCTCTCGGAGATGG TCAAGCAAGGCCTCAAGCCGGATGCCATCAGCTACAATGCGGCTGTGGAG GCCTGCGCCAAGTCGGGAAAGTGGGACGCCCTGGTCATCCTGCTGCAGGA GACGGCTCGGGACCCGGACACCACACTTTTGGATGCCGTCTACAACAATG CCGTCATAACCTGCGCCAAGTACGGCAACTGGGAGTTGGCGGCCACCGTG CTGCAGGAGATGGAGTATTTGGGTGGGAATGGTGGAAGTGGGGCGGGGAC GCCGGGCGGCAGCAATAGCAGCAGTCATCCGGGCTTGTCGCCCACCTCGG CCTCCTACTCTGCGGTCATTGACGCTTGTGCCAAGGCCCTGGCCGCCGCA GGAGCAGCAGGTGACGGGAGCCCATCCTCTTTCAACCCTCCCCCTCCCGG TGGCCTGCCCCAGTGGGAGCTGATCCTGAGCAAGCTTGACCGCATGCGTG AGAAGGGCCTGCTGCCCGACTCCAGCTCGTACAACGCGGCCGTACGCGCC TGTGTCTGCGGGCCAGCCAAGCACTGGAAGAAGGCCGTGGATTTGCTGCA GGAGATGGCCTCAAAGGGCTACCTAGTCGACCAGAGTACCTCGAACGCCG TCATGCAGGCCTGCACTGCTGGCGTTGCCGGCGCTGCGGGTAGTGATGCT GCGGATGAGGCAGTTGTATCATCAACAGCCGCGGGAGGGATGGGCAGACC CGACGAGACCCATGCTGCAGCAGAACGTGAGAGGGCCTTGGCACTCCTCC GCAAGATGATGGCAGGCGGCTCACCTTTTGACAGCACCAGTAGCGAGTCC TCAGGTGTGCCTTCTGGCCCTCCTGCTGCTCTTCTTTCCGCTGTGTCTTC CTCCCGCACTTCTACAGGACTGGGCTCCGGTGCTCCCTCCTTAGCGTCTT CCACCTCTTGCCTATTGCTTAACTCACACGGAGGAGACTCGTTTGTCGAG AGTGGGCAAGCCCCACTTTGGGAACGGACAACCAGTATCCCCGACGAAAT TGCACTCACGAGTGGAAGCAGCGTGATTGGAGAAGTCGGTGGTCTCGTGC TTGGTGGTGACCTCGCAGAGATCCTTGGCCCTTCCTCCCCGACGGGCCCG GAATCCCCGCGACCGGTGGGGTTGATCGGCAGTCCATCTTTCAGTTCTAT TCCAGCTTCATCGACGGTTGCATATCCTCGGTCGCCTGCTATGGCGTTAG GACCTGGGAGTCCATTTTTGAGCGCGACTAAAGGTAGCAGCACCGAGAAT GATGGGAATGGAGGAGGAAGGATGGGAAGCTTCTTGTTGCAAGCGGCGCG GCACAAGCCGACAGAGCAGAAGGTCGAAGTTGTGACGGGGGATAGTGATG GGGAGGGAAGAGCCCCTGGTGATGGTGCGATGGAAAGTGAGAAAGCGGTG GGCGTTTTAAATTCAGGATGGAGCCAGTCGTAA
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Coding sequence (CDS) from alignment at chr4:687237..689519+

>NO04G02580.1 ID=NO04G02580.1|Name=NO04G02580.1|organism=Nannochloropsis oceanica|type=CDS|length=2283bp|location=Sequence derived from alignment at chr4:687237..689519+ (Nannochloropsis oceanica)
ATGCTGGGGCATGGGCTGGTGCCGGACCTGAAGACGGTGAAGACCATCAT
GCGGACATGCGTGAAGAAGCTGGCCTGGCGACGGGCGGTGCAGCTGCTGC
ACACAACAGGCCTGCCGCTGGACGTGGTCATCTTCACAATGGCTATCAAC
ACTTGCGGTAAGGCCGGAGAGTGGGAGCAGGGCCTGCGGGTGCTGCGGGA
GATGGACTCTGAGGAGGCCAAGGCCCACGGCATCGTGCCCAACGAGGTGA
GCTACGGGACGGCCATCTCGGCTTGCGGCAAGGCGGGCCGGTGGGAGCTG
GCGCTCTCGCTCTTAAACGAGGTCAAGGATCGCGGCCTGCTCCTCAATGA
TGTTTGTTACGGCGGGGCAATTGATGCCTGCGGGCGCGCGGGTCAGTGGC
AGGAGGCACTCAAGCTCCTGAATGAGATGACGCTGGACGGGGTGGCGGCC
AATGAGGTGTGCTACAACTCGGCCATCTCCGCCTGCGGCAAGGCCGGGGA
GTGGGAGAAGGCGGTGGCTTTGTTGCGCGAGATGCGGGAGCGGGGCCTGA
CGCCCGACGAGCTGAACTACAACTCCGCTATCTCGGCCTGCGGCAAGGCG
GCCCAGTGGGCGCACGCCATTCGCCTGCTCCGCGAGATGGCCGTACAAGG
GTTGTGCCCGGATGTGGTGTCCTACGGGGCGGCCATCGATGCCTGCCGTA
AGGCCGGCAAGTACGACCGAGGCCTGGCGCTGCTGGGCGAGATGCGCCAG
GTGGGCCTGGTGCCCAACGAGGTTTGCTACCACTCGGCGGTCACGGCCTG
CTCCGAGGCAGGCCGGTGGAATGAGGCCCTGTTTGTGCTCTCGGAGATGG
TCAAGCAAGGCCTCAAGCCGGATGCCATCAGCTACAATGCGGCTGTGGAG
GCCTGCGCCAAGTCGGGAAAGTGGGACGCCCTGGTCATCCTGCTGCAGGA
GACGGCTCGGGACCCGGACACCACACTTTTGGATGCCGTCTACAACAATG
CCGTCATAACCTGCGCCAAGTACGGCAACTGGGAGTTGGCGGCCACCGTG
CTGCAGGAGATGGAGTATTTGGGTGGGAATGGTGGAAGTGGGGCGGGGAC
GCCGGGCGGCAGCAATAGCAGCAGTCATCCGGGCTTGTCGCCCACCTCGG
CCTCCTACTCTGCGGTCATTGACGCTTGTGCCAAGGCCCTGGCCGCCGCA
GGAGCAGCAGGTGACGGGAGCCCATCCTCTTTCAACCCTCCCCCTCCCGG
TGGCCTGCCCCAGTGGGAGCTGATCCTGAGCAAGCTTGACCGCATGCGTG
AGAAGGGCCTGCTGCCCGACTCCAGCTCGTACAACGCGGCCGTACGCGCC
TGTGTCTGCGGGCCAGCCAAGCACTGGAAGAAGGCCGTGGATTTGCTGCA
GGAGATGGCCTCAAAGGGCTACCTAGTCGACCAGAGTACCTCGAACGCCG
TCATGCAGGCCTGCACTGCTGGCGTTGCCGGCGCTGCGGGTAGTGATGCT
GCGGATGAGGCAGTTGTATCATCAACAGCCGCGGGAGGGATGGGCAGACC
CGACGAGACCCATGCTGCAGCAGAACGTGAGAGGGCCTTGGCACTCCTCC
GCAAGATGATGGCAGGCGGCTCACCTTTTGACAGCACCAGTAGCGAGTCC
TCAGGTGTGCCTTCTGGCCCTCCTGCTGCTCTTCTTTCCGCTGTGTCTTC
CTCCCGCACTTCTACAGGACTGGGCTCCGGTGCTCCCTCCTTAGCGTCTT
CCACCTCTTGCCTATTGCTTAACTCACACGGAGGAGACTCGTTTGTCGAG
AGTGGGCAAGCCCCACTTTGGGAACGGACAACCAGTATCCCCGACGAAAT
TGCACTCACGAGTGGAAGCAGCGTGATTGGAGAAGTCGGTGGTCTCGTGC
TTGGTGGTGACCTCGCAGAGATCCTTGGCCCTTCCTCCCCGACGGGCCCG
GAATCCCCGCGACCGGTGGGGTTGATCGGCAGTCCATCTTTCAGTTCTAT
TCCAGCTTCATCGACGGTTGCATATCCTCGGTCGCCTGCTATGGCGTTAG
GACCTGGGAGTCCATTTTTGAGCGCGACTAAAGGTAGCAGCACCGAGAAT
GATGGGAATGGAGGAGGAAGGATGGGAAGCTTCTTGTTGCAAGCGGCGCG
GCACAAGCCGACAGAGCAGAAGGTCGAAGTTGTGACGGGGGATAGTGATG
GGGAGGGAAGAGCCCCTGGTGATGGTGCGATGGAAAGTGAGAAAGCGGTG
GGCGTTTTAAATTCAGGATGGAGCCAGTCGTAA
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Synonyms
Publications