NO04G02560.1, NO04G02560.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO04G02560.1
Unique NameNO04G02560.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1365
Alignment locationchr4:682933..684511 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:682933..684511 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO04G02560.1 vs.
Match: EWM28638.1 (stress-inducible protein [Nannochloropsis gaditana])

HSP 1 Score: 523.1 bits (1346), Expect = 8.000e-145
Identity = 267/415 (64.34%), Postives = 325/415 (78.31%), Query Frame = 0
Query:    2 DDWAEAKAKGNQAYQAGNHQQAIKHFTTAIELETPKNTGKQLHILYSNRSAAQLSLGLAHEALMDAKKCQELEPTFAKGWSREGAALYRLGRFSDAMAAYEAGLQQTPGNADLTRALAEARKAADQTRVPTLNELLPKMQAFLLKHRLDGRLFLPRIFLFLNAFLYLFPFLLPSGWGLASYRRALYTIALIHLYSIYYTHGMPKFKIEYLAQVMQDTHAPPLFLSLLLLSFKGKAYIFGLTPLLLTEGIQLLWLFTEVLTLAKPIFGKSLSARNTSLASLYTQNPQYGAISSGPARWQAIFTATISHAITLEIAMGLFLVLELFTPWRNTFGLFLFWQYLQMRYMLDKSGEVKNKFKKLDEFFLNLTSHSKCPGVVGQAYSMLRGYMGRAVAMPDPQQQQQQQRGGGGLGRCSVM 417
            +DW +AKAKGNQAYQAGNH  A++HFTTAI+L TPK+   QLHILYSNRSAA+L+LGLA+EAL DAKKC E++P FAKGWSR GAA+YR+GR+ +A+AAY  GL Q PGNADLTRALAEA  AA + R P   +LLP ++AF LK RL  RLFLPR+F+ LN  +YL PFL P+GWGLASYRR LYT A++HLY++Y  HG PKF I++LA+ MQD HA PLFLSLLLLSF+ K Y+ G+  LLLTEG+Q+L    ++L LA+P   K+LSAR   LA  YTQNP+YGA+ +  ARW A+FTA+ SHA  LEI  GLFL LEL TP RN FG+FLFWQYLQMRYMLD+SG VK  FK+LD+F L LTSH  CP  +G+ Y +LRGY+GRAVA+PDPQQQ++  + GGG+ RC VM
Sbjct:    6 EDWTQAKAKGNQAYQAGNHLLAVEHFTTAIQL-TPKDGDHQLHILYSNRSAARLNLGLAYEALADAKKCTEIQPAFAKGWSRVGAAMYRMGRYPEAVAAYTEGLVQAPGNADLTRALAEASHAAQEMRGPPRRDLLPHLRAFFLKDRLATRLFLPRVFMLLNGLIYLIPFL-PAGWGLASYRRVLYTAAVLHLYALYNAHGFPKFTIDFLARCMQDVHASPLFLSLLLLSFRSKTYLPGVAALLLTEGMQVLCFLNQLLALARPAAEKALSARFMGLAMRYTQNPRYGALPTPQARWAALFTASASHAAALEIGTGLFLGLELLTPRRNIFGIFLFWQYLQMRYMLDQSGVVKGHFKRLDDFLLRLTSHPSCPAFLGRGYELLRGYLGRAVAIPDPQQQRRPPQ-GGGMPRCCVM 417          
The following BLAST results are available for this feature:
BLAST of NO04G02560.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28638.18.000e-14564.34stress-inducible protein [Nannochloropsis gaditana... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO04G02560NO04G02560Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO04G02560.1NO04G02560.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO04G02560.1.cds1NO04G02560.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G02560.1.cds2NO04G02560.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO04G02560.1 ID=NO04G02560.1|Name=NO04G02560.1|organism=Nannochloropsis oceanica|type=mRNA|length=1365bp
AGACAAAGAGCCCGCTGTCCTCTTTGCTGCCTCTCCCCAGCAATACCTTT
TGTCACCACATTCATCATCGGTGGGGAATCACCGTGGCCGGCATAGAGCA
GGAGCAGCAGCGATGGACGACTGGGCCGAAGCCAAGGCCAAGGGCAACCA
GGCCTACCAAGCCGGGAACCATCAACAAGCTATCAAGCATTTCACGACTG
CGATCGAGCTGGAGACCCCCAAGAACACTGGAAAACAACTGCACATTTTG
TATTCGAACCGCTCGGCTGCCCAGCTCAGTTTGGGCCTAGCCCACGAGGC
GCTCATGGACGCCAAAAAATGCCAGGAACTGGAGCCGACATTTGCCAAAG
GCTGGAGCCGTGAGGGTGCTGCCTTGTATCGACTGGGACGGTTCTCCGAC
GCTATGGCGGCTTACGAAGCCGGGTTGCAGCAGACGCCGGGAAATGCGGA
CCTGACCCGCGCCCTAGCCGAAGCCCGCAAAGCCGCGGATCAAACGCGGG
TTCCCACTCTCAACGAGCTTCTGCCTAAAATGCAAGCATTTTTGCTGAAA
CACCGCTTGGACGGCCGGCTCTTCCTCCCCCGGATCTTTCTTTTTCTCAA
TGCCTTTCTCTACCTCTTCCCGTTCCTCCTCCCCTCCGGGTGGGGCCTAG
CCAGCTATCGTCGTGCACTTTACACCATCGCGCTGATACACCTCTACTCT
ATCTACTACACCCATGGCATGCCGAAATTTAAAATCGAATACCTGGCGCA
AGTCATGCAAGACACGCATGCCCCCCCCCTCTTCCTCTCCCTCCTCCTCC
TCTCCTTCAAAGGTAAAGCTTATATCTTCGGCCTGACCCCCTTGCTGCTC
ACCGAAGGGATACAACTCCTATGGCTTTTCACCGAGGTCCTTACTCTTGC
CAAACCCATTTTCGGGAAATCCCTCTCCGCGCGCAACACAAGCCTTGCTT
CACTTTACACTCAAAATCCGCAATATGGTGCCATCTCCTCAGGCCCCGCA
CGGTGGCAAGCCATCTTCACCGCAACCATTTCGCACGCAATCACCCTTGA
GATAGCCATGGGTCTTTTTCTGGTGTTGGAACTGTTCACGCCCTGGCGGA
ACACGTTCGGCTTGTTCCTGTTTTGGCAGTATCTCCAAATGAGGTACATG
CTCGACAAAAGCGGCGAAGTCAAAAATAAATTCAAAAAGTTGGACGAGTT
TTTTTTGAATCTGACCAGTCACTCAAAGTGTCCCGGGGTGGTAGGACAGG
CCTATTCAATGCTGAGGGGGTATATGGGGAGGGCTGTTGCGATGCCGGAT
CCTCAGCAGCAGCAGCAGCAGCAGCGTGGGGGTGGTGGGTTGGGCCGGTG
TAGTGTGATGTGAGG
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protein sequence of NO04G02560.1

>NO04G02560.1-protein ID=NO04G02560.1-protein|Name=NO04G02560.1|organism=Nannochloropsis oceanica|type=polypeptide|length=417bp
MDDWAEAKAKGNQAYQAGNHQQAIKHFTTAIELETPKNTGKQLHILYSNR
SAAQLSLGLAHEALMDAKKCQELEPTFAKGWSREGAALYRLGRFSDAMAA
YEAGLQQTPGNADLTRALAEARKAADQTRVPTLNELLPKMQAFLLKHRLD
GRLFLPRIFLFLNAFLYLFPFLLPSGWGLASYRRALYTIALIHLYSIYYT
HGMPKFKIEYLAQVMQDTHAPPLFLSLLLLSFKGKAYIFGLTPLLLTEGI
QLLWLFTEVLTLAKPIFGKSLSARNTSLASLYTQNPQYGAISSGPARWQA
IFTATISHAITLEIAMGLFLVLELFTPWRNTFGLFLFWQYLQMRYMLDKS
GEVKNKFKKLDEFFLNLTSHSKCPGVVGQAYSMLRGYMGRAVAMPDPQQQ
QQQQRGGGGLGRCSVM*
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mRNA from alignment at chr4:682933..684511-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO04G02560.1 ID=NO04G02560.1|Name=NO04G02560.1|organism=Nannochloropsis oceanica|type=mRNA|length=1579bp|location=Sequence derived from alignment at chr4:682933..684511- (Nannochloropsis oceanica)
AGACAAAGAGCCCGCTGTCCTCTTTGCTGCCTCTCCCCAGCAATACCTTT TGTCACCACATTCATCATCGGTGGGGAATCACCGTGGCCGGCATAGAGCA GGAGCAGCAGCGATGGACGACTGGGCCGAAGCCAAGGCCAAGGGCAACCA GGCCTACCAAGCCGGGAACCATCAACAAGCTATCAAGCATTTCACGACTG CGATCGAGCTGGAGACCCCCAAGAACACTGGAAAACAACTGCACATTTTG TATTCGAACCGCTCGGCTGCCCAGCTCAGTTTGGGCCTAGCCCACGAGGC GCTCATGGACGCCAAAAAATGCCAGGAACTGGAGCCGACATTTGCCAAAG GCTGGAGCCGTGAGGGTGCTGCCTTGTATCGACTGGGACGGTTCTCCGAC GCTATGGCGGCTTACGAAGCCGGGTTGCAGCAGACGCCGGGAAATGCGGT AAGTGAGAAGTTTTTGGTGCTCTGTATGGGATGATAGGGGAGGGAAGGAT TGGAAGTAGACTAGTCTGCGAAGGCCCGATATTAATTTGGTCTTCTCTTT AGCCTTCTCTTTGGTCTTCATAGGCCCGTGGTCGTTCATTCACTCAAACT ATATCCTCTTATTTACTCACCCGCATTCTCCATCCACCACCAATCCTATC ACCACCTCACAGGACCTGACCCGCGCCCTAGCCGAAGCCCGCAAAGCCGC GGATCAAACGCGGGTTCCCACTCTCAACGAGCTTCTGCCTAAAATGCAAG CATTTTTGCTGAAACACCGCTTGGACGGCCGGCTCTTCCTCCCCCGGATC TTTCTTTTTCTCAATGCCTTTCTCTACCTCTTCCCGTTCCTCCTCCCCTC CGGGTGGGGCCTAGCCAGCTATCGTCGTGCACTTTACACCATCGCGCTGA TACACCTCTACTCTATCTACTACACCCATGGCATGCCGAAATTTAAAATC GAATACCTGGCGCAAGTCATGCAAGACACGCATGCCCCCCCCCTCTTCCT CTCCCTCCTCCTCCTCTCCTTCAAAGGTAAAGCTTATATCTTCGGCCTGA CCCCCTTGCTGCTCACCGAAGGGATACAACTCCTATGGCTTTTCACCGAG GTCCTTACTCTTGCCAAACCCATTTTCGGGAAATCCCTCTCCGCGCGCAA CACAAGCCTTGCTTCACTTTACACTCAAAATCCGCAATATGGTGCCATCT CCTCAGGCCCCGCACGGTGGCAAGCCATCTTCACCGCAACCATTTCGCAC GCAATCACCCTTGAGATAGCCATGGGTCTTTTTCTGGTGTTGGAACTGTT CACGCCCTGGCGGAACACGTTCGGCTTGTTCCTGTTTTGGCAGTATCTCC AAATGAGGTACATGCTCGACAAAAGCGGCGAAGTCAAAAATAAATTCAAA AAGTTGGACGAGTTTTTTTTGAATCTGACCAGTCACTCAAAGTGTCCCGG GGTGGTAGGACAGGCCTATTCAATGCTGAGGGGGTATATGGGGAGGGCTG TTGCGATGCCGGATCCTCAGCAGCAGCAGCAGCAGCAGCGTGGGGGTGGT GGGTTGGGCCGGTGTAGTGTGATGTGAGG
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Coding sequence (CDS) from alignment at chr4:682933..684511-

>NO04G02560.1 ID=NO04G02560.1|Name=NO04G02560.1|organism=Nannochloropsis oceanica|type=CDS|length=1251bp|location=Sequence derived from alignment at chr4:682933..684511- (Nannochloropsis oceanica)
ATGGACGACTGGGCCGAAGCCAAGGCCAAGGGCAACCAGGCCTACCAAGC
CGGGAACCATCAACAAGCTATCAAGCATTTCACGACTGCGATCGAGCTGG
AGACCCCCAAGAACACTGGAAAACAACTGCACATTTTGTATTCGAACCGC
TCGGCTGCCCAGCTCAGTTTGGGCCTAGCCCACGAGGCGCTCATGGACGC
CAAAAAATGCCAGGAACTGGAGCCGACATTTGCCAAAGGCTGGAGCCGTG
AGGGTGCTGCCTTGTATCGACTGGGACGGTTCTCCGACGCTATGGCGGCT
TACGAAGCCGGGTTGCAGCAGACGCCGGGAAATGCGGACCTGACCCGCGC
CCTAGCCGAAGCCCGCAAAGCCGCGGATCAAACGCGGGTTCCCACTCTCA
ACGAGCTTCTGCCTAAAATGCAAGCATTTTTGCTGAAACACCGCTTGGAC
GGCCGGCTCTTCCTCCCCCGGATCTTTCTTTTTCTCAATGCCTTTCTCTA
CCTCTTCCCGTTCCTCCTCCCCTCCGGGTGGGGCCTAGCCAGCTATCGTC
GTGCACTTTACACCATCGCGCTGATACACCTCTACTCTATCTACTACACC
CATGGCATGCCGAAATTTAAAATCGAATACCTGGCGCAAGTCATGCAAGA
CACGCATGCCCCCCCCCTCTTCCTCTCCCTCCTCCTCCTCTCCTTCAAAG
GTAAAGCTTATATCTTCGGCCTGACCCCCTTGCTGCTCACCGAAGGGATA
CAACTCCTATGGCTTTTCACCGAGGTCCTTACTCTTGCCAAACCCATTTT
CGGGAAATCCCTCTCCGCGCGCAACACAAGCCTTGCTTCACTTTACACTC
AAAATCCGCAATATGGTGCCATCTCCTCAGGCCCCGCACGGTGGCAAGCC
ATCTTCACCGCAACCATTTCGCACGCAATCACCCTTGAGATAGCCATGGG
TCTTTTTCTGGTGTTGGAACTGTTCACGCCCTGGCGGAACACGTTCGGCT
TGTTCCTGTTTTGGCAGTATCTCCAAATGAGGTACATGCTCGACAAAAGC
GGCGAAGTCAAAAATAAATTCAAAAAGTTGGACGAGTTTTTTTTGAATCT
GACCAGTCACTCAAAGTGTCCCGGGGTGGTAGGACAGGCCTATTCAATGC
TGAGGGGGTATATGGGGAGGGCTGTTGCGATGCCGGATCCTCAGCAGCAG
CAGCAGCAGCAGCGTGGGGGTGGTGGGTTGGGCCGGTGTAGTGTGATGTG
A
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Synonyms
Publications