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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr4 | genome | chr4:682933..684511 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO04G02560.1 vs.
Match: EWM28638.1 (stress-inducible protein [Nannochloropsis gaditana]) HSP 1 Score: 523.1 bits (1346), Expect = 8.000e-145 Identity = 267/415 (64.34%), Postives = 325/415 (78.31%), Query Frame = 0
Query: 2 DDWAEAKAKGNQAYQAGNHQQAIKHFTTAIELETPKNTGKQLHILYSNRSAAQLSLGLAHEALMDAKKCQELEPTFAKGWSREGAALYRLGRFSDAMAAYEAGLQQTPGNADLTRALAEARKAADQTRVPTLNELLPKMQAFLLKHRLDGRLFLPRIFLFLNAFLYLFPFLLPSGWGLASYRRALYTIALIHLYSIYYTHGMPKFKIEYLAQVMQDTHAPPLFLSLLLLSFKGKAYIFGLTPLLLTEGIQLLWLFTEVLTLAKPIFGKSLSARNTSLASLYTQNPQYGAISSGPARWQAIFTATISHAITLEIAMGLFLVLELFTPWRNTFGLFLFWQYLQMRYMLDKSGEVKNKFKKLDEFFLNLTSHSKCPGVVGQAYSMLRGYMGRAVAMPDPQQQQQQQRGGGGLGRCSVM 417
+DW +AKAKGNQAYQAGNH A++HFTTAI+L TPK+ QLHILYSNRSAA+L+LGLA+EAL DAKKC E++P FAKGWSR GAA+YR+GR+ +A+AAY GL Q PGNADLTRALAEA AA + R P +LLP ++AF LK RL RLFLPR+F+ LN +YL PFL P+GWGLASYRR LYT A++HLY++Y HG PKF I++LA+ MQD HA PLFLSLLLLSF+ K Y+ G+ LLLTEG+Q+L ++L LA+P K+LSAR LA YTQNP+YGA+ + ARW A+FTA+ SHA LEI GLFL LEL TP RN FG+FLFWQYLQMRYMLD+SG VK FK+LD+F L LTSH CP +G+ Y +LRGY+GRAVA+PDPQQQ++ + GGG+ RC VM
Sbjct: 6 EDWTQAKAKGNQAYQAGNHLLAVEHFTTAIQL-TPKDGDHQLHILYSNRSAARLNLGLAYEALADAKKCTEIQPAFAKGWSRVGAAMYRMGRYPEAVAAYTEGLVQAPGNADLTRALAEASHAAQEMRGPPRRDLLPHLRAFFLKDRLATRLFLPRVFMLLNGLIYLIPFL-PAGWGLASYRRVLYTAAVLHLYALYNAHGFPKFTIDFLARCMQDVHASPLFLSLLLLSFRSKTYLPGVAALLLTEGMQVLCFLNQLLALARPAAEKALSARFMGLAMRYTQNPRYGALPTPQARWAALFTASASHAAALEIGTGLFLGLELLTPRRNIFGIFLFWQYLQMRYMLDQSGVVKGHFKRLDDFLLRLTSHPSCPAFLGRGYELLRGYLGRAVAIPDPQQQRRPPQ-GGGMPRCCVM 417
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO04G02560.1 ID=NO04G02560.1|Name=NO04G02560.1|organism=Nannochloropsis oceanica|type=mRNA|length=1365bp AGACAAAGAGCCCGCTGTCCTCTTTGCTGCCTCTCCCCAGCAATACCTTT TGTCACCACATTCATCATCGGTGGGGAATCACCGTGGCCGGCATAGAGCA GGAGCAGCAGCGATGGACGACTGGGCCGAAGCCAAGGCCAAGGGCAACCA GGCCTACCAAGCCGGGAACCATCAACAAGCTATCAAGCATTTCACGACTG CGATCGAGCTGGAGACCCCCAAGAACACTGGAAAACAACTGCACATTTTG TATTCGAACCGCTCGGCTGCCCAGCTCAGTTTGGGCCTAGCCCACGAGGC GCTCATGGACGCCAAAAAATGCCAGGAACTGGAGCCGACATTTGCCAAAG GCTGGAGCCGTGAGGGTGCTGCCTTGTATCGACTGGGACGGTTCTCCGAC GCTATGGCGGCTTACGAAGCCGGGTTGCAGCAGACGCCGGGAAATGCGGA CCTGACCCGCGCCCTAGCCGAAGCCCGCAAAGCCGCGGATCAAACGCGGG TTCCCACTCTCAACGAGCTTCTGCCTAAAATGCAAGCATTTTTGCTGAAA CACCGCTTGGACGGCCGGCTCTTCCTCCCCCGGATCTTTCTTTTTCTCAA TGCCTTTCTCTACCTCTTCCCGTTCCTCCTCCCCTCCGGGTGGGGCCTAG CCAGCTATCGTCGTGCACTTTACACCATCGCGCTGATACACCTCTACTCT ATCTACTACACCCATGGCATGCCGAAATTTAAAATCGAATACCTGGCGCA AGTCATGCAAGACACGCATGCCCCCCCCCTCTTCCTCTCCCTCCTCCTCC TCTCCTTCAAAGGTAAAGCTTATATCTTCGGCCTGACCCCCTTGCTGCTC ACCGAAGGGATACAACTCCTATGGCTTTTCACCGAGGTCCTTACTCTTGC CAAACCCATTTTCGGGAAATCCCTCTCCGCGCGCAACACAAGCCTTGCTT CACTTTACACTCAAAATCCGCAATATGGTGCCATCTCCTCAGGCCCCGCA CGGTGGCAAGCCATCTTCACCGCAACCATTTCGCACGCAATCACCCTTGA GATAGCCATGGGTCTTTTTCTGGTGTTGGAACTGTTCACGCCCTGGCGGA ACACGTTCGGCTTGTTCCTGTTTTGGCAGTATCTCCAAATGAGGTACATG CTCGACAAAAGCGGCGAAGTCAAAAATAAATTCAAAAAGTTGGACGAGTT TTTTTTGAATCTGACCAGTCACTCAAAGTGTCCCGGGGTGGTAGGACAGG CCTATTCAATGCTGAGGGGGTATATGGGGAGGGCTGTTGCGATGCCGGAT CCTCAGCAGCAGCAGCAGCAGCAGCGTGGGGGTGGTGGGTTGGGCCGGTG TAGTGTGATGTGAGG back to topprotein sequence of NO04G02560.1 >NO04G02560.1-protein ID=NO04G02560.1-protein|Name=NO04G02560.1|organism=Nannochloropsis oceanica|type=polypeptide|length=417bp MDDWAEAKAKGNQAYQAGNHQQAIKHFTTAIELETPKNTGKQLHILYSNR SAAQLSLGLAHEALMDAKKCQELEPTFAKGWSREGAALYRLGRFSDAMAA YEAGLQQTPGNADLTRALAEARKAADQTRVPTLNELLPKMQAFLLKHRLD GRLFLPRIFLFLNAFLYLFPFLLPSGWGLASYRRALYTIALIHLYSIYYT HGMPKFKIEYLAQVMQDTHAPPLFLSLLLLSFKGKAYIFGLTPLLLTEGI QLLWLFTEVLTLAKPIFGKSLSARNTSLASLYTQNPQYGAISSGPARWQA IFTATISHAITLEIAMGLFLVLELFTPWRNTFGLFLFWQYLQMRYMLDKS GEVKNKFKKLDEFFLNLTSHSKCPGVVGQAYSMLRGYMGRAVAMPDPQQQ QQQQRGGGGLGRCSVM* back to topmRNA from alignment at chr4:682933..684511- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO04G02560.1 ID=NO04G02560.1|Name=NO04G02560.1|organism=Nannochloropsis oceanica|type=mRNA|length=1579bp|location=Sequence derived from alignment at chr4:682933..684511- (Nannochloropsis oceanica) AGACAAAGAGCCCGCTGTCCTCTTTGCTGCCTCTCCCCAGCAATACCTTT
TGTCACCACATTCATCATCGGTGGGGAATCACCGTGGCCGGCATAGAGCA
GGAGCAGCAGCGATGGACGACTGGGCCGAAGCCAAGGCCAAGGGCAACCA
GGCCTACCAAGCCGGGAACCATCAACAAGCTATCAAGCATTTCACGACTG
CGATCGAGCTGGAGACCCCCAAGAACACTGGAAAACAACTGCACATTTTG
TATTCGAACCGCTCGGCTGCCCAGCTCAGTTTGGGCCTAGCCCACGAGGC
GCTCATGGACGCCAAAAAATGCCAGGAACTGGAGCCGACATTTGCCAAAG
GCTGGAGCCGTGAGGGTGCTGCCTTGTATCGACTGGGACGGTTCTCCGAC
GCTATGGCGGCTTACGAAGCCGGGTTGCAGCAGACGCCGGGAAATGCGGT
AAGTGAGAAGTTTTTGGTGCTCTGTATGGGATGATAGGGGAGGGAAGGAT
TGGAAGTAGACTAGTCTGCGAAGGCCCGATATTAATTTGGTCTTCTCTTT
AGCCTTCTCTTTGGTCTTCATAGGCCCGTGGTCGTTCATTCACTCAAACT
ATATCCTCTTATTTACTCACCCGCATTCTCCATCCACCACCAATCCTATC
ACCACCTCACAGGACCTGACCCGCGCCCTAGCCGAAGCCCGCAAAGCCGC
GGATCAAACGCGGGTTCCCACTCTCAACGAGCTTCTGCCTAAAATGCAAG
CATTTTTGCTGAAACACCGCTTGGACGGCCGGCTCTTCCTCCCCCGGATC
TTTCTTTTTCTCAATGCCTTTCTCTACCTCTTCCCGTTCCTCCTCCCCTC
CGGGTGGGGCCTAGCCAGCTATCGTCGTGCACTTTACACCATCGCGCTGA
TACACCTCTACTCTATCTACTACACCCATGGCATGCCGAAATTTAAAATC
GAATACCTGGCGCAAGTCATGCAAGACACGCATGCCCCCCCCCTCTTCCT
CTCCCTCCTCCTCCTCTCCTTCAAAGGTAAAGCTTATATCTTCGGCCTGA
CCCCCTTGCTGCTCACCGAAGGGATACAACTCCTATGGCTTTTCACCGAG
GTCCTTACTCTTGCCAAACCCATTTTCGGGAAATCCCTCTCCGCGCGCAA
CACAAGCCTTGCTTCACTTTACACTCAAAATCCGCAATATGGTGCCATCT
CCTCAGGCCCCGCACGGTGGCAAGCCATCTTCACCGCAACCATTTCGCAC
GCAATCACCCTTGAGATAGCCATGGGTCTTTTTCTGGTGTTGGAACTGTT
CACGCCCTGGCGGAACACGTTCGGCTTGTTCCTGTTTTGGCAGTATCTCC
AAATGAGGTACATGCTCGACAAAAGCGGCGAAGTCAAAAATAAATTCAAA
AAGTTGGACGAGTTTTTTTTGAATCTGACCAGTCACTCAAAGTGTCCCGG
GGTGGTAGGACAGGCCTATTCAATGCTGAGGGGGTATATGGGGAGGGCTG
TTGCGATGCCGGATCCTCAGCAGCAGCAGCAGCAGCAGCGTGGGGGTGGT
GGGTTGGGCCGGTGTAGTGTGATGTGAGG back to topCoding sequence (CDS) from alignment at chr4:682933..684511- >NO04G02560.1 ID=NO04G02560.1|Name=NO04G02560.1|organism=Nannochloropsis oceanica|type=CDS|length=1251bp|location=Sequence derived from alignment at chr4:682933..684511- (Nannochloropsis oceanica) ATGGACGACTGGGCCGAAGCCAAGGCCAAGGGCAACCAGGCCTACCAAGC CGGGAACCATCAACAAGCTATCAAGCATTTCACGACTGCGATCGAGCTGG AGACCCCCAAGAACACTGGAAAACAACTGCACATTTTGTATTCGAACCGC TCGGCTGCCCAGCTCAGTTTGGGCCTAGCCCACGAGGCGCTCATGGACGC CAAAAAATGCCAGGAACTGGAGCCGACATTTGCCAAAGGCTGGAGCCGTG AGGGTGCTGCCTTGTATCGACTGGGACGGTTCTCCGACGCTATGGCGGCT TACGAAGCCGGGTTGCAGCAGACGCCGGGAAATGCGGACCTGACCCGCGC CCTAGCCGAAGCCCGCAAAGCCGCGGATCAAACGCGGGTTCCCACTCTCA ACGAGCTTCTGCCTAAAATGCAAGCATTTTTGCTGAAACACCGCTTGGAC GGCCGGCTCTTCCTCCCCCGGATCTTTCTTTTTCTCAATGCCTTTCTCTA CCTCTTCCCGTTCCTCCTCCCCTCCGGGTGGGGCCTAGCCAGCTATCGTC GTGCACTTTACACCATCGCGCTGATACACCTCTACTCTATCTACTACACC CATGGCATGCCGAAATTTAAAATCGAATACCTGGCGCAAGTCATGCAAGA CACGCATGCCCCCCCCCTCTTCCTCTCCCTCCTCCTCCTCTCCTTCAAAG GTAAAGCTTATATCTTCGGCCTGACCCCCTTGCTGCTCACCGAAGGGATA CAACTCCTATGGCTTTTCACCGAGGTCCTTACTCTTGCCAAACCCATTTT CGGGAAATCCCTCTCCGCGCGCAACACAAGCCTTGCTTCACTTTACACTC AAAATCCGCAATATGGTGCCATCTCCTCAGGCCCCGCACGGTGGCAAGCC ATCTTCACCGCAACCATTTCGCACGCAATCACCCTTGAGATAGCCATGGG TCTTTTTCTGGTGTTGGAACTGTTCACGCCCTGGCGGAACACGTTCGGCT TGTTCCTGTTTTGGCAGTATCTCCAAATGAGGTACATGCTCGACAAAAGC GGCGAAGTCAAAAATAAATTCAAAAAGTTGGACGAGTTTTTTTTGAATCT GACCAGTCACTCAAAGTGTCCCGGGGTGGTAGGACAGGCCTATTCAATGC TGAGGGGGTATATGGGGAGGGCTGTTGCGATGCCGGATCCTCAGCAGCAG CAGCAGCAGCAGCGTGGGGGTGGTGGGTTGGGCCGGTGTAGTGTGATGTG A back to top
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