NO04G02230.1, NO04G02230.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO04G02230.1
Unique NameNO04G02230.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2210
Alignment locationchr4:639745..641954 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:639745..641954 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO04G02230.1 vs.
Match: EWM28634.1 (sulfotransferase [Nannochloropsis gaditana])

HSP 1 Score: 847.0 bits (2187), Expect = 3.700e-242
Identity = 396/563 (70.34%), Postives = 475/563 (84.37%), Query Frame = 0 
Query:   31 ATRTASPSPAAAAAKAYTASRSNNTTAPPRAVLANPALLALPRHIPPAGQVGLGHKGVPINQLPEEAWGHVPLCRTRGQVCVAGLKRKLAEGGPKLWQEEEARKSNVGVIRPSHDAWGIGKIVFVYCDDFLRRCFEMPWMHDPEWRALLLPIFDALGVPPHKIVRCLLASMPPGIAIPPHHDTGYWVHYTHRIHLPVITDPAHIAFRVGPSDAHLQRFDLAEGHLIELNNQAKHSVDNCWGQHRVHLIMDYIEGNSVSIERTLLSPGTKINQTRRSIDLESERGIRPCPSYIIIGAQKCGTTSLYEYLCQHPLVLRANRRETHYLDWRWRREEGLTWREHRDTYHKFFHKAILDENPSCLTGESTPSYMLHSDVVVPRVRELAPEAKMLVMLRCPVARAYSQYQMVIDPDGTPEQKKARGTLWKGKSFEEVVEKELEELEACGVTPDMTYEEFKTRFLASRPLGHGSHSLLGRGLYALQLQPWMAEFGGDKGQLMVLFTEEMRTGEAAQTQVGKVFAFLGLPPHDIIDTDAKNTRQYEQLDEKMQARLAAFYAPFNDKLFEML 594
            +T T+S SP+++ + ++ +S S+N + PP AV A+P+ ++LPR +PP   + LGHKGVP+++LPEEA   VPLC  RG+VCVAG+KRKL++GG KLWQEE A K+NVG++RPSHDAWGI KIVF+YCDDFLRRCFEMPW HDPEW+ALLLP+F AL V P  +VRCLLASMPPGIAIPPHHDTGYWVHY+HRIHLP+ TDPA I FRVGPS   LQR+DL EG L+ELNNQAKHSVDN W + RVHLI+DY+E +  SIER++L PG K++QTRRSIDLESE G RPCPS++I+GAQK GTTSLYEYLCQHPLVLRA RRETHYLDWRWRREE LTW +HR+TY +FFH A+L+ENPSC+TGESTPSY+LHSD+V+PRVR+LAP AK+LV+LRCPVARAYSQYQMV DP+G+ EQKKARG+ W GKSFEEVVE E+++LE   V P M Y+EFK  +L+SRPLGHGSHSLLGRGLYALQLQPW+  FG D  QLMV+F E+M +  A Q Q+GKVF FLGLPPH IIDT AKNTR Y  +DE+ +ARL+AFYAPFN +LF++L
Sbjct:   27 STSTSSSSPSSSTS-SFPSSSSSNLSPPPSAVQASPSFVSLPRMVPPNATITLGHKGVPVHELPEEARVRVPLCSARGKVCVAGIKRKLSDGGAKLWQEENAEKTNVGILRPSHDAWGIKKIVFIYCDDFLRRCFEMPWFHDPEWQALLLPVFQALNVAPRMVVRCLLASMPPGIAIPPHHDTGYWVHYSHRIHLPIETDPARIVFRVGPSKDRLQRYDLPEGCLVELNNQAKHSVDNLWDRSRVHLILDYLEKD--SIERSILPPGAKLHQTRRSIDLESEHGSRPCPSFLILGAQKSGTTSLYEYLCQHPLVLRARRRETHYLDWRWRREEHLTWEDHRETYLRFFHAALLNENPSCMTGESTPSYLLHSDIVLPRVRKLAPTAKLLVILRCPVARAYSQYQMVTDPEGSVEQKKARGSHWLGKSFEEVVEAEMQDLERHRVHPTMNYQEFKDGYLSSRPLGHGSHSLLGRGLYALQLQPWLEAFGRD--QLMVMFMEDMASHNAVQAQLGKVFDFLGLPPHSIIDTHAKNTRAYTPMDERTKARLSAFYAPFNQQLFQIL 584
The following BLAST results are available for this feature:
BLAST of NO04G02230.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28634.13.700e-24270.34sulfotransferase [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO04G02230NO04G02230Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO04G02230.1NO04G02230.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO04G02230.1.cds1NO04G02230.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO04G02230.1 ID=NO04G02230.1|Name=NO04G02230.1|organism=Nannochloropsis oceanica|type=mRNA|length=2210bp
GCTCAGCTATTTGCACAGCACAGTGTGTTCTACTCGCAAGCGGGCCTCGG
TTGGTTACATTTTCAGCGGTCCAGTGCTGGCCCATCTCATTTGAGAGCTC
TAAATTGAACACCCACGATTTAATCAAGGGCACCACAGGCTTGGCGGTGT
TGCCGATGTAGTGGACAGGATCTCCAAGCCTCTCTTCATGTAAATCGTGC
TGGATGCGCGGTTTGCTGGAGGCAACCCCCCTCATGACAACCCCTCTCCC
TCTAGAGAGATGAGGCGACGAGTGGAGATGAATGCCGCAGCCTGCCATGT
GGATTTTTGACCGCACACTAACGAGCGAGCGTACGCACCCAAATCCAACC
TTCACACAGCCGCAAGTGATGGCAACCCGCACCGCATCACCATCGCCTGC
GGCAGCTGCTGCCAAGGCATATACTGCTTCTCGCTCCAACAATACCACTG
CGCCTCCTCGCGCTGTGCTTGCCAACCCTGCTCTTCTGGCCCTCCCACGC
CACATTCCACCAGCTGGCCAGGTCGGTCTAGGGCACAAAGGTGTCCCCAT
TAACCAGCTGCCGGAGGAGGCATGGGGCCACGTGCCTTTGTGTCGAACGC
GGGGCCAAGTCTGCGTGGCAGGCCTGAAACGCAAATTAGCAGAGGGCGGT
CCCAAGCTGTGGCAAGAGGAAGAAGCCCGAAAGAGTAACGTGGGCGTGAT
CCGCCCCAGCCACGACGCCTGGGGAATAGGAAAGATTGTCTTTGTCTACT
GCGATGATTTTCTACGACGGTGCTTCGAGATGCCATGGATGCACGATCCT
GAGTGGCGCGCGCTCCTACTCCCCATCTTCGATGCCCTCGGCGTGCCCCC
CCACAAAATCGTCCGTTGCCTCCTTGCGTCCATGCCTCCCGGGATCGCCA
TTCCTCCACATCATGACACGGGCTACTGGGTGCATTACACCCATCGGATT
CACCTTCCCGTTATCACCGACCCTGCCCACATCGCCTTTCGTGTCGGCCC
CTCCGATGCGCATCTTCAACGCTTCGACCTGGCTGAAGGCCACCTCATCG
AGCTTAACAACCAGGCGAAACACAGCGTGGACAACTGCTGGGGGCAACAC
CGGGTACACTTAATAATGGACTACATCGAAGGAAATTCGGTAAGTATCGA
ACGTACCCTCCTTTCGCCCGGCACTAAGATCAACCAAACCCGCCGCTCAA
TCGACCTGGAGTCGGAACGAGGAATACGTCCCTGCCCTAGTTACATCATT
ATAGGCGCACAGAAGTGTGGAACCACGTCCTTGTATGAATATCTGTGTCA
GCATCCCTTGGTGTTGAGGGCAAACAGGCGGGAGACTCATTACCTGGATT
GGCGGTGGCGGAGGGAGGAAGGGTTGACTTGGCGGGAGCACCGGGACACG
TATCACAAGTTCTTCCACAAGGCCATATTGGATGAAAACCCGTCGTGTCT
TACTGGAGAATCGACGCCAAGCTATATGCTGCATAGCGACGTGGTGGTGC
CGAGGGTAAGGGAGCTGGCGCCCGAGGCCAAGATGCTGGTGATGCTCCGT
TGTCCTGTGGCGAGGGCCTACAGTCAGTACCAAATGGTGATTGACCCGGA
TGGCACCCCAGAGCAGAAAAAAGCTAGGGGAACGCTCTGGAAAGGGAAGT
CGTTCGAGGAAGTGGTCGAGAAGGAGTTGGAGGAGCTAGAGGCATGCGGA
GTGACGCCGGATATGACGTACGAAGAGTTTAAGACACGGTTTTTAGCTTC
GAGACCACTTGGGCATGGCAGCCATTCGTTGCTAGGGAGAGGGCTGTATG
CCTTGCAGTTGCAGCCGTGGATGGCTGAATTTGGGGGAGACAAGGGTCAG
TTGATGGTATTGTTTACCGAGGAGATGAGGACGGGGGAGGCGGCGCAGAC
ACAGGTCGGCAAGGTGTTTGCGTTCTTGGGGCTGCCTCCTCATGACATAA
TTGATACAGATGCCAAGAATACTAGGCAGTACGAACAGTTGGACGAAAAA
ATGCAAGCGAGGTTGGCAGCATTTTACGCGCCGTTTAATGACAAGTTGTT
TGAGATGTTGGCGCGACCGAGGGGGATGGCGGGGTGGGCGGGGATGAAAG
AGGAGGGAGGGGTTCGCAATGGACAGGTACTGTCCGTAGACGAGGCGAAG
TCGGAGCAGCTTCGTACAAATGTAAGGACTGAACAAAATATGCGGCGAAA
GCGGGAATAA
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protein sequence of NO04G02230.1

>NO04G02230.1-protein ID=NO04G02230.1-protein|Name=NO04G02230.1|organism=Nannochloropsis oceanica|type=polypeptide|length=643bp
MPQPAMWIFDRTLTSERTHPNPTFTQPQVMATRTASPSPAAAAAKAYTAS
RSNNTTAPPRAVLANPALLALPRHIPPAGQVGLGHKGVPINQLPEEAWGH
VPLCRTRGQVCVAGLKRKLAEGGPKLWQEEEARKSNVGVIRPSHDAWGIG
KIVFVYCDDFLRRCFEMPWMHDPEWRALLLPIFDALGVPPHKIVRCLLAS
MPPGIAIPPHHDTGYWVHYTHRIHLPVITDPAHIAFRVGPSDAHLQRFDL
AEGHLIELNNQAKHSVDNCWGQHRVHLIMDYIEGNSVSIERTLLSPGTKI
NQTRRSIDLESERGIRPCPSYIIIGAQKCGTTSLYEYLCQHPLVLRANRR
ETHYLDWRWRREEGLTWREHRDTYHKFFHKAILDENPSCLTGESTPSYML
HSDVVVPRVRELAPEAKMLVMLRCPVARAYSQYQMVIDPDGTPEQKKARG
TLWKGKSFEEVVEKELEELEACGVTPDMTYEEFKTRFLASRPLGHGSHSL
LGRGLYALQLQPWMAEFGGDKGQLMVLFTEEMRTGEAAQTQVGKVFAFLG
LPPHDIIDTDAKNTRQYEQLDEKMQARLAAFYAPFNDKLFEMLARPRGMA
GWAGMKEEGGVRNGQVLSVDEAKSEQLRTNVRTEQNMRRKRE*
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mRNA from alignment at chr4:639745..641954+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO04G02230.1 ID=NO04G02230.1|Name=NO04G02230.1|organism=Nannochloropsis oceanica|type=mRNA|length=2210bp|location=Sequence derived from alignment at chr4:639745..641954+ (Nannochloropsis oceanica)
GCTCAGCTATTTGCACAGCACAGTGTGTTCTACTCGCAAGCGGGCCTCGG
TTGGTTACATTTTCAGCGGTCCAGTGCTGGCCCATCTCATTTGAGAGCTC
TAAATTGAACACCCACGATTTAATCAAGGGCACCACAGGCTTGGCGGTGT
TGCCGATGTAGTGGACAGGATCTCCAAGCCTCTCTTCATGTAAATCGTGC
TGGATGCGCGGTTTGCTGGAGGCAACCCCCCTCATGACAACCCCTCTCCC
TCTAGAGAGATGAGGCGACGAGTGGAGATGAATGCCGCAGCCTGCCATGT
GGATTTTTGACCGCACACTAACGAGCGAGCGTACGCACCCAAATCCAACC
TTCACACAGCCGCAAGTGATGGCAACCCGCACCGCATCACCATCGCCTGC
GGCAGCTGCTGCCAAGGCATATACTGCTTCTCGCTCCAACAATACCACTG
CGCCTCCTCGCGCTGTGCTTGCCAACCCTGCTCTTCTGGCCCTCCCACGC
CACATTCCACCAGCTGGCCAGGTCGGTCTAGGGCACAAAGGTGTCCCCAT
TAACCAGCTGCCGGAGGAGGCATGGGGCCACGTGCCTTTGTGTCGAACGC
GGGGCCAAGTCTGCGTGGCAGGCCTGAAACGCAAATTAGCAGAGGGCGGT
CCCAAGCTGTGGCAAGAGGAAGAAGCCCGAAAGAGTAACGTGGGCGTGAT
CCGCCCCAGCCACGACGCCTGGGGAATAGGAAAGATTGTCTTTGTCTACT
GCGATGATTTTCTACGACGGTGCTTCGAGATGCCATGGATGCACGATCCT
GAGTGGCGCGCGCTCCTACTCCCCATCTTCGATGCCCTCGGCGTGCCCCC
CCACAAAATCGTCCGTTGCCTCCTTGCGTCCATGCCTCCCGGGATCGCCA
TTCCTCCACATCATGACACGGGCTACTGGGTGCATTACACCCATCGGATT
CACCTTCCCGTTATCACCGACCCTGCCCACATCGCCTTTCGTGTCGGCCC
CTCCGATGCGCATCTTCAACGCTTCGACCTGGCTGAAGGCCACCTCATCG
AGCTTAACAACCAGGCGAAACACAGCGTGGACAACTGCTGGGGGCAACAC
CGGGTACACTTAATAATGGACTACATCGAAGGAAATTCGGTAAGTATCGA
ACGTACCCTCCTTTCGCCCGGCACTAAGATCAACCAAACCCGCCGCTCAA
TCGACCTGGAGTCGGAACGAGGAATACGTCCCTGCCCTAGTTACATCATT
ATAGGCGCACAGAAGTGTGGAACCACGTCCTTGTATGAATATCTGTGTCA
GCATCCCTTGGTGTTGAGGGCAAACAGGCGGGAGACTCATTACCTGGATT
GGCGGTGGCGGAGGGAGGAAGGGTTGACTTGGCGGGAGCACCGGGACACG
TATCACAAGTTCTTCCACAAGGCCATATTGGATGAAAACCCGTCGTGTCT
TACTGGAGAATCGACGCCAAGCTATATGCTGCATAGCGACGTGGTGGTGC
CGAGGGTAAGGGAGCTGGCGCCCGAGGCCAAGATGCTGGTGATGCTCCGT
TGTCCTGTGGCGAGGGCCTACAGTCAGTACCAAATGGTGATTGACCCGGA
TGGCACCCCAGAGCAGAAAAAAGCTAGGGGAACGCTCTGGAAAGGGAAGT
CGTTCGAGGAAGTGGTCGAGAAGGAGTTGGAGGAGCTAGAGGCATGCGGA
GTGACGCCGGATATGACGTACGAAGAGTTTAAGACACGGTTTTTAGCTTC
GAGACCACTTGGGCATGGCAGCCATTCGTTGCTAGGGAGAGGGCTGTATG
CCTTGCAGTTGCAGCCGTGGATGGCTGAATTTGGGGGAGACAAGGGTCAG
TTGATGGTATTGTTTACCGAGGAGATGAGGACGGGGGAGGCGGCGCAGAC
ACAGGTCGGCAAGGTGTTTGCGTTCTTGGGGCTGCCTCCTCATGACATAA
TTGATACAGATGCCAAGAATACTAGGCAGTACGAACAGTTGGACGAAAAA
ATGCAAGCGAGGTTGGCAGCATTTTACGCGCCGTTTAATGACAAGTTGTT
TGAGATGTTGGCGCGACCGAGGGGGATGGCGGGGTGGGCGGGGATGAAAG
AGGAGGGAGGGGTTCGCAATGGACAGGTACTGTCCGTAGACGAGGCGAAG
TCGGAGCAGCTTCGTACAAATGTAAGGACTGAACAAAATATGCGGCGAAA
GCGGGAATAA
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Coding sequence (CDS) from alignment at chr4:639745..641954+

>NO04G02230.1 ID=NO04G02230.1|Name=NO04G02230.1|organism=Nannochloropsis oceanica|type=CDS|length=1929bp|location=Sequence derived from alignment at chr4:639745..641954+ (Nannochloropsis oceanica)
ATGCCGCAGCCTGCCATGTGGATTTTTGACCGCACACTAACGAGCGAGCG
TACGCACCCAAATCCAACCTTCACACAGCCGCAAGTGATGGCAACCCGCA
CCGCATCACCATCGCCTGCGGCAGCTGCTGCCAAGGCATATACTGCTTCT
CGCTCCAACAATACCACTGCGCCTCCTCGCGCTGTGCTTGCCAACCCTGC
TCTTCTGGCCCTCCCACGCCACATTCCACCAGCTGGCCAGGTCGGTCTAG
GGCACAAAGGTGTCCCCATTAACCAGCTGCCGGAGGAGGCATGGGGCCAC
GTGCCTTTGTGTCGAACGCGGGGCCAAGTCTGCGTGGCAGGCCTGAAACG
CAAATTAGCAGAGGGCGGTCCCAAGCTGTGGCAAGAGGAAGAAGCCCGAA
AGAGTAACGTGGGCGTGATCCGCCCCAGCCACGACGCCTGGGGAATAGGA
AAGATTGTCTTTGTCTACTGCGATGATTTTCTACGACGGTGCTTCGAGAT
GCCATGGATGCACGATCCTGAGTGGCGCGCGCTCCTACTCCCCATCTTCG
ATGCCCTCGGCGTGCCCCCCCACAAAATCGTCCGTTGCCTCCTTGCGTCC
ATGCCTCCCGGGATCGCCATTCCTCCACATCATGACACGGGCTACTGGGT
GCATTACACCCATCGGATTCACCTTCCCGTTATCACCGACCCTGCCCACA
TCGCCTTTCGTGTCGGCCCCTCCGATGCGCATCTTCAACGCTTCGACCTG
GCTGAAGGCCACCTCATCGAGCTTAACAACCAGGCGAAACACAGCGTGGA
CAACTGCTGGGGGCAACACCGGGTACACTTAATAATGGACTACATCGAAG
GAAATTCGGTAAGTATCGAACGTACCCTCCTTTCGCCCGGCACTAAGATC
AACCAAACCCGCCGCTCAATCGACCTGGAGTCGGAACGAGGAATACGTCC
CTGCCCTAGTTACATCATTATAGGCGCACAGAAGTGTGGAACCACGTCCT
TGTATGAATATCTGTGTCAGCATCCCTTGGTGTTGAGGGCAAACAGGCGG
GAGACTCATTACCTGGATTGGCGGTGGCGGAGGGAGGAAGGGTTGACTTG
GCGGGAGCACCGGGACACGTATCACAAGTTCTTCCACAAGGCCATATTGG
ATGAAAACCCGTCGTGTCTTACTGGAGAATCGACGCCAAGCTATATGCTG
CATAGCGACGTGGTGGTGCCGAGGGTAAGGGAGCTGGCGCCCGAGGCCAA
GATGCTGGTGATGCTCCGTTGTCCTGTGGCGAGGGCCTACAGTCAGTACC
AAATGGTGATTGACCCGGATGGCACCCCAGAGCAGAAAAAAGCTAGGGGA
ACGCTCTGGAAAGGGAAGTCGTTCGAGGAAGTGGTCGAGAAGGAGTTGGA
GGAGCTAGAGGCATGCGGAGTGACGCCGGATATGACGTACGAAGAGTTTA
AGACACGGTTTTTAGCTTCGAGACCACTTGGGCATGGCAGCCATTCGTTG
CTAGGGAGAGGGCTGTATGCCTTGCAGTTGCAGCCGTGGATGGCTGAATT
TGGGGGAGACAAGGGTCAGTTGATGGTATTGTTTACCGAGGAGATGAGGA
CGGGGGAGGCGGCGCAGACACAGGTCGGCAAGGTGTTTGCGTTCTTGGGG
CTGCCTCCTCATGACATAATTGATACAGATGCCAAGAATACTAGGCAGTA
CGAACAGTTGGACGAAAAAATGCAAGCGAGGTTGGCAGCATTTTACGCGC
CGTTTAATGACAAGTTGTTTGAGATGTTGGCGCGACCGAGGGGGATGGCG
GGGTGGGCGGGGATGAAAGAGGAGGGAGGGGTTCGCAATGGACAGGTACT
GTCCGTAGACGAGGCGAAGTCGGAGCAGCTTCGTACAAATGTAAGGACTG
AACAAAATATGCGGCGAAAGCGGGAATAA
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Synonyms
Publications