NO04G02110.1, NO04G02110.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO04G02110.1
Unique NameNO04G02110.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1212
Alignment locationchr4:607917..609128 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:607917..609128 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO04G02110.1 vs.
Match: EWM28552.1 (diphthamide biosynthesis [Nannochloropsis gaditana])

HSP 1 Score: 440.3 bits (1131), Expect = 6.600e-120
Identity = 245/397 (61.71%), Postives = 292/397 (73.55%), Query Frame = 0 
Query:    7 LAEQYELERTLQEVERHGYRRVALQFPDDQLKDAPQVCQWLMAQSRIRQDEQQAEQDDGTAPSIVPLFFVIGDTSYGSCCVDEVAAQHLNADLVVHYGHACLSPTSRLPVLYVFGRRTLPQPSHEVATCIATTLKTQQNETRAFMFYDLAYKSIIPALGALVNEQLSESGTRLYIARLPLAATTPLMP-TLMGQQPQDQHSPSGQEQEQGDEATLGDGQKRVIFAGGLELEI----EEGEVEATQPVIIYLGCSKGNKQLANIMLRFNTCICLSYDPTDPPTLPPSSSSSPPSQPLPPPLLQPQSLQTNKELKRRYYLVQRARDASVFGIVVGTLGVGRYMGVVSAVRRLIANANKKSYTLLVGKLNPAKLANFAEIETFVLVACPEASLLDGGGES 399
            L++ YE +RTL  +ER+GY RVALQFPD+ LKDAP+VCQ+LMAQS+IRQ  ++  Q D  +    PLFFVIGDTSYGSCCVDEVAAQHL+ADLVVHYGHACLSPTSRLPVLYVFGR+ L Q    +ATC++TTL  +  E RAF+FY+LAY++IIP +   VN QL  S   +  ARLPLA+ +P++P +  GQ    Q   +G E+E G          +VIFAGGLEL +    EEGE E    V+IY+G S+ NKQL NIMLRFN C CL YDP  PP LP             PP L+  S++T++ LKRRYYLVQRARDASVFG+VVGTLGVGRYM VV+AVRRLIA A KK+YTLL+GKLN AKLANFAEIETFVLVACPEASLL+ GG +
Sbjct:   15 LSDLYECDRTLDAIERNGYCRVALQFPDEMLKDAPRVCQFLMAQSKIRQKREKERQHD-VSEHTEPLFFVIGDTSYGSCCVDEVAAQHLDADLVVHYGHACLSPTSRLPVLYVFGRKPLTQTLQSIATCLSTTLLARSKEKRAFLFYELAYEAIIPDVALEVNGQLVGSHVEVTTARLPLASVSPILPFSEEGQYLASQ--ATGCEKEAG----------KVIFAGGLELRVENNGEEGEGEGGDAVVIYIGESENNKQLVNIMLRFNACDCLVYDPASPP-LP------------APPRLREVSVKTSQALKRRYYLVQRARDASVFGVVVGTLGVGRYMSVVAAVRRLIARAGKKAYTLLIGKLNAAKLANFAEIETFVLVACPEASLLEDGGRA 385
The following BLAST results are available for this feature:
BLAST of NO04G02110.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28552.16.600e-12061.71diphthamide biosynthesis [Nannochloropsis gaditana... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO04G02110NO04G02110Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO04G02110.1NO04G02110.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO04G02110.1.cds1NO04G02110.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO04G02110.1 ID=NO04G02110.1|Name=NO04G02110.1|organism=Nannochloropsis oceanica|type=mRNA|length=1212bp
ATGGCGACTGCAAGGCGGCTGGCGGAGCAGTACGAGTTAGAGCGGACACT
ACAAGAGGTCGAGAGGCATGGGTACCGTCGTGTGGCCCTGCAATTTCCTG
ACGACCAGCTCAAGGACGCACCCCAGGTGTGCCAATGGCTCATGGCCCAG
AGCAGAATACGACAGGATGAACAGCAGGCAGAGCAGGACGATGGCACCGC
ACCATCAATCGTACCGCTCTTCTTTGTGATTGGTGACACCTCATACGGCA
GTTGCTGTGTAGACGAGGTAGCGGCGCAACACTTAAACGCGGATCTGGTC
GTGCATTACGGACATGCTTGCCTCTCACCGACATCCCGCCTCCCAGTCCT
CTACGTCTTTGGCCGCCGCACCCTCCCTCAACCATCGCACGAAGTCGCCA
CCTGCATAGCTACCACTCTCAAAACACAACAAAACGAGACACGCGCCTTC
ATGTTTTACGATTTGGCATACAAATCAATCATTCCAGCGCTGGGCGCGCT
TGTCAATGAGCAGTTAAGTGAGTCGGGCACTCGTTTGTACATAGCACGCC
TCCCTTTAGCCGCCACCACGCCTTTGATGCCCACCTTAATGGGACAGCAG
CCTCAAGATCAACATTCGCCTTCTGGGCAGGAGCAAGAACAAGGAGACGA
GGCGACACTAGGGGATGGACAAAAACGAGTCATTTTCGCAGGGGGACTGG
AATTGGAAATCGAGGAGGGAGAGGTGGAAGCCACACAACCTGTCATCATA
TACCTGGGATGTAGCAAGGGCAACAAGCAACTCGCCAATATCATGCTTCG
CTTCAACACCTGCATCTGCCTCTCCTATGACCCGACCGACCCTCCCACCC
TCCCTCCCTCTTCTTCTTCCTCCCCACCATCACAACCCCTACCCCCACCT
CTCCTTCAACCCCAATCCCTCCAAACCAACAAAGAGCTCAAACGCCGTTA
TTACCTTGTTCAACGCGCGCGCGATGCCTCCGTGTTCGGTATCGTTGTCG
GCACCCTTGGCGTGGGCCGCTACATGGGCGTGGTCTCCGCCGTTCGGCGC
CTCATCGCCAACGCAAACAAAAAGTCTTATACCCTCCTAGTCGGGAAACT
CAATCCTGCCAAACTCGCAAATTTTGCAGAAATTGAAACCTTTGTCCTCG
TGGCCTGCCCCGAAGCATCCTTGCTGGACGGGGGGGGAGAGAGTACCATG
CTCCGGTTGTAA
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protein sequence of NO04G02110.1

>NO04G02110.1-protein ID=NO04G02110.1-protein|Name=NO04G02110.1|organism=Nannochloropsis oceanica|type=polypeptide|length=404bp
MATARRLAEQYELERTLQEVERHGYRRVALQFPDDQLKDAPQVCQWLMAQ
SRIRQDEQQAEQDDGTAPSIVPLFFVIGDTSYGSCCVDEVAAQHLNADLV
VHYGHACLSPTSRLPVLYVFGRRTLPQPSHEVATCIATTLKTQQNETRAF
MFYDLAYKSIIPALGALVNEQLSESGTRLYIARLPLAATTPLMPTLMGQQ
PQDQHSPSGQEQEQGDEATLGDGQKRVIFAGGLELEIEEGEVEATQPVII
YLGCSKGNKQLANIMLRFNTCICLSYDPTDPPTLPPSSSSSPPSQPLPPP
LLQPQSLQTNKELKRRYYLVQRARDASVFGIVVGTLGVGRYMGVVSAVRR
LIANANKKSYTLLVGKLNPAKLANFAEIETFVLVACPEASLLDGGGESTM
LRL*
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mRNA from alignment at chr4:607917..609128-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO04G02110.1 ID=NO04G02110.1|Name=NO04G02110.1|organism=Nannochloropsis oceanica|type=mRNA|length=1212bp|location=Sequence derived from alignment at chr4:607917..609128- (Nannochloropsis oceanica)
ATGGCGACTGCAAGGCGGCTGGCGGAGCAGTACGAGTTAGAGCGGACACT
ACAAGAGGTCGAGAGGCATGGGTACCGTCGTGTGGCCCTGCAATTTCCTG
ACGACCAGCTCAAGGACGCACCCCAGGTGTGCCAATGGCTCATGGCCCAG
AGCAGAATACGACAGGATGAACAGCAGGCAGAGCAGGACGATGGCACCGC
ACCATCAATCGTACCGCTCTTCTTTGTGATTGGTGACACCTCATACGGCA
GTTGCTGTGTAGACGAGGTAGCGGCGCAACACTTAAACGCGGATCTGGTC
GTGCATTACGGACATGCTTGCCTCTCACCGACATCCCGCCTCCCAGTCCT
CTACGTCTTTGGCCGCCGCACCCTCCCTCAACCATCGCACGAAGTCGCCA
CCTGCATAGCTACCACTCTCAAAACACAACAAAACGAGACACGCGCCTTC
ATGTTTTACGATTTGGCATACAAATCAATCATTCCAGCGCTGGGCGCGCT
TGTCAATGAGCAGTTAAGTGAGTCGGGCACTCGTTTGTACATAGCACGCC
TCCCTTTAGCCGCCACCACGCCTTTGATGCCCACCTTAATGGGACAGCAG
CCTCAAGATCAACATTCGCCTTCTGGGCAGGAGCAAGAACAAGGAGACGA
GGCGACACTAGGGGATGGACAAAAACGAGTCATTTTCGCAGGGGGACTGG
AATTGGAAATCGAGGAGGGAGAGGTGGAAGCCACACAACCTGTCATCATA
TACCTGGGATGTAGCAAGGGCAACAAGCAACTCGCCAATATCATGCTTCG
CTTCAACACCTGCATCTGCCTCTCCTATGACCCGACCGACCCTCCCACCC
TCCCTCCCTCTTCTTCTTCCTCCCCACCATCACAACCCCTACCCCCACCT
CTCCTTCAACCCCAATCCCTCCAAACCAACAAAGAGCTCAAACGCCGTTA
TTACCTTGTTCAACGCGCGCGCGATGCCTCCGTGTTCGGTATCGTTGTCG
GCACCCTTGGCGTGGGCCGCTACATGGGCGTGGTCTCCGCCGTTCGGCGC
CTCATCGCCAACGCAAACAAAAAGTCTTATACCCTCCTAGTCGGGAAACT
CAATCCTGCCAAACTCGCAAATTTTGCAGAAATTGAAACCTTTGTCCTCG
TGGCCTGCCCCGAAGCATCCTTGCTGGACGGGGGGGGAGAGAGTACCATG
CTCCGGTTGTAA
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Coding sequence (CDS) from alignment at chr4:607917..609128-

>NO04G02110.1 ID=NO04G02110.1|Name=NO04G02110.1|organism=Nannochloropsis oceanica|type=CDS|length=1212bp|location=Sequence derived from alignment at chr4:607917..609128- (Nannochloropsis oceanica)
ATGGCGACTGCAAGGCGGCTGGCGGAGCAGTACGAGTTAGAGCGGACACT
ACAAGAGGTCGAGAGGCATGGGTACCGTCGTGTGGCCCTGCAATTTCCTG
ACGACCAGCTCAAGGACGCACCCCAGGTGTGCCAATGGCTCATGGCCCAG
AGCAGAATACGACAGGATGAACAGCAGGCAGAGCAGGACGATGGCACCGC
ACCATCAATCGTACCGCTCTTCTTTGTGATTGGTGACACCTCATACGGCA
GTTGCTGTGTAGACGAGGTAGCGGCGCAACACTTAAACGCGGATCTGGTC
GTGCATTACGGACATGCTTGCCTCTCACCGACATCCCGCCTCCCAGTCCT
CTACGTCTTTGGCCGCCGCACCCTCCCTCAACCATCGCACGAAGTCGCCA
CCTGCATAGCTACCACTCTCAAAACACAACAAAACGAGACACGCGCCTTC
ATGTTTTACGATTTGGCATACAAATCAATCATTCCAGCGCTGGGCGCGCT
TGTCAATGAGCAGTTAAGTGAGTCGGGCACTCGTTTGTACATAGCACGCC
TCCCTTTAGCCGCCACCACGCCTTTGATGCCCACCTTAATGGGACAGCAG
CCTCAAGATCAACATTCGCCTTCTGGGCAGGAGCAAGAACAAGGAGACGA
GGCGACACTAGGGGATGGACAAAAACGAGTCATTTTCGCAGGGGGACTGG
AATTGGAAATCGAGGAGGGAGAGGTGGAAGCCACACAACCTGTCATCATA
TACCTGGGATGTAGCAAGGGCAACAAGCAACTCGCCAATATCATGCTTCG
CTTCAACACCTGCATCTGCCTCTCCTATGACCCGACCGACCCTCCCACCC
TCCCTCCCTCTTCTTCTTCCTCCCCACCATCACAACCCCTACCCCCACCT
CTCCTTCAACCCCAATCCCTCCAAACCAACAAAGAGCTCAAACGCCGTTA
TTACCTTGTTCAACGCGCGCGCGATGCCTCCGTGTTCGGTATCGTTGTCG
GCACCCTTGGCGTGGGCCGCTACATGGGCGTGGTCTCCGCCGTTCGGCGC
CTCATCGCCAACGCAAACAAAAAGTCTTATACCCTCCTAGTCGGGAAACT
CAATCCTGCCAAACTCGCAAATTTTGCAGAAATTGAAACCTTTGTCCTCG
TGGCCTGCCCCGAAGCATCCTTGCTGGACGGGGGGGGAGAGAGTACCATG
CTCCGGTTGTAA
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Synonyms
Publications