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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr4 | genome | chr4:575763..577765 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO04G01960.2 vs.
Match: EWM28567.1 (Oxidoreductase [Nannochloropsis gaditana]) HSP 1 Score: 774.6 bits (1999), Expect = 1.600e-220 Identity = 376/447 (84.12%), Postives = 407/447 (91.05%), Query Frame = 0
Query: 1 MAASSQVKPVDMLMIGTGEYTTGYVYGEASDSDKSAGVVALTMFDLRRRGKVGRLGLCGTNGKKFPGIRAHMDRAIGQTYSGLDMTMDTFPADDETDPKAYEMALQRFKSGDAVTVFTPDDTHFDIALACVQRGLHVLVTKPVVKTLAEHRLLKEAAEKAGVLVMVEVHKRFDPIYLDAKDKIQELGDFSYMYSYMSQPKHQLDTFRAWAGKASDISYYLNSHHTDFHEWAVQGRSRPIRVTALASTGVATSQYKIDTEDTITLSVQWQNRGPNPSLGTGLYTSSWVAPKSDVHSQQRFFYMGQGGEVNVDQAHRGYTMASDSYGGGGFKSVNPLFMKYTPSKGKFVGQRGYGYMSFEAFVDAVAEIEGGRARVEDFDSSLATIGTTALTTAILEAGRRSLDAGGRGMEIVYGEEADKAWAMPATVGEGGKEGGMHPFPTDIKPVVF 448
MA + +PVDMLMIGTGEYTTGYV+GEASDSDKSAGVVALTMFDLRRRGK+GRLGLCGTNGKKFPGIRAHMD+AIGQTY GLDMTMDTFP D DP+AY AL++FK GDA T+FTPDDTHFDIALACV+RGLHVLVTKPVVKTLAEHR LK+AAE +GVLVMVEVHKRFDPIYLDAKDKIQ LG FSYMYSYMSQPKHQLDTFRAWAGK SDISYYLNSHHTDFHEWA+QGRSRP+RV+ALASTGVAT QY++DTEDTITLSVQWQNRGP+PSLGTGLYTSSWVAPKSDVHSQQRFFYMG GGEVNVDQAHRGYT+ASD GGGGFKSVNPLFMKYTP+ G+F GQRGYGY+SFEAFVDAV +I+ G+A V DFD++LATIGTTALTTAILEAGRRSLDAGGR MEIVYGEEAD+ W+ P EGG+E HPFP DI+PV F
Sbjct: 2 MAGAKPRQPVDMLMIGTGEYTTGYVHGEASDSDKSAGVVALTMFDLRRRGKIGRLGLCGTNGKKFPGIRAHMDKAIGQTYKGLDMTMDTFPTDGAVDPQAYIAALEKFKPGDAATIFTPDDTHFDIALACVKRGLHVLVTKPVVKTLAEHRALKDAAEASGVLVMVEVHKRFDPIYLDAKDKIQALGPFSYMYSYMSQPKHQLDTFRAWAGKGSDISYYLNSHHTDFHEWAMQGRSRPVRVSALASTGVATCQYQMDTEDTITLSVQWQNRGPSPSLGTGLYTSSWVAPKSDVHSQQRFFYMGHGGEVNVDQAHRGYTLASDELGGGGFKSVNPLFMKYTPTDGRFAGQRGYGYLSFEAFVDAVVDIQSGKASVGDFDAALATIGTTALTTAILEAGRRSLDAGGRPMEIVYGEEADRTWSAP----EGGEEN--HPFPIDIRPVEF 442
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO04G01960.2 ID=NO04G01960.2|Name=NO04G01960.2|organism=Nannochloropsis oceanica|type=mRNA|length=1789bp
CCCGCTTGGTCTTGCATTGCTTTTATTGTTTTGTTCTGGTCCTCACGGCA
CCTTTGTGATAGGGCTTCGTTGCAACAGCATCTCCTTGCCGGTGTGCAAC
CCTTTAAGTCGCTGCCCTCTCAGCCCCAACCACAGGCCTTTCCTCTTCTC
TTCATCTTTCCCATACACGTTATCATCATCTGCAGCAGCAACAGCACAGC
AGATCCCTTGTTCTCACAAACATGGCTGCATCAAGCCAAGTGAAGCCTGT
GGACATGTTGATGATCGGCACGGGCGAATACACCACCGGCTACGTCTACG
GTGAAGCCTCAGATTCAGACAAAAGTGCGGGTGTAGTAGCTCTTACCATG
TTTGATCTTCGCCGTCGGGGCAAGGTGGGTAGGCTTGGGCTCTGTGGGAC
AAATGGAAAAAAGTTCCCAGGAATCCGTGCGCATATGGACCGTGCCATCG
GACAGACTTACAGTGGGCTTGACATGACAATGGACACTTTTCCGGCCGAT
GACGAGACAGATCCCAAGGCATATGAAATGGCGCTTCAAAGATTCAAATC
GGGGGATGCCGTCACTGTCTTTACGCCTGACGACACGCATTTTGATATTG
CCCTCGCGTGTGTCCAACGTGGGTTGCACGTGCTCGTGACGAAGCCCGTC
GTCAAAACCCTGGCGGAACATCGTCTGCTCAAGGAGGCGGCAGAGAAGGC
AGGGGTGTTGGTGATGGTCGAAGTACATAAACGCTTCGATCCCATCTACC
TCGATGCCAAGGACAAAATCCAAGAGCTAGGCGATTTCTCTTACATGTAC
TCCTACATGTCCCAGCCCAAGCATCAACTCGATACCTTCCGTGCCTGGGC
AGGAAAAGCCTCTGATATCTCCTACTACCTCAACTCCCACCACACTGATT
TTCACGAATGGGCCGTGCAAGGACGGTCCCGCCCCATCCGCGTCACTGCC
CTCGCTTCCACCGGCGTGGCTACAAGCCAATATAAAATCGACACAGAGGA
CACGATTACCCTGTCCGTGCAATGGCAGAACCGCGGGCCAAACCCCAGTC
TAGGCACGGGTCTCTATACTTCTTCGTGGGTGGCGCCCAAGTCAGACGTG
CATTCCCAGCAGAGGTTTTTTTACATGGGGCAGGGGGGGGAGGTTAATGT
TGACCAGGCCCACCGAGGGTACACAATGGCGAGTGATAGCTACGGAGGAG
GGGGCTTTAAGAGTGTCAATCCTTTGTTCATGAAATACACGCCCAGTAAA
GGTAAATTTGTTGGGCAACGTGGGTATGGATATATGAGTTTTGAGGCATT
TGTGGATGCTGTAGCGGAGATAGAGGGGGGGAGGGCGAGAGTGGAGGACT
TTGACTCGAGCCTGGCGACGATTGGGACGACGGCCTTGACCACAGCGATT
TTGGAGGCAGGAAGACGCTCGTTGGATGCGGGGGGGAGGGGGATGGAGAT
TGTGTATGGGGAGGAGGCGGATAAGGCATGGGCGATGCCGGCGACAGTGG
GGGAGGGAGGGAAAGAGGGAGGTATGCACCCGTTCCCGACGGATATAAAA
CCGGTAGTGTTTTAGAGGAAGGATAGGCGGGAGGAGGGGCGGGAGAAAGG
GGCACCCTAAAATCGAAACGAAGAAAAGAGAACAAGAAAAGGCGGAATTG
ACAAATAATAAAATGGGGCAAATGGCGAGATGCAACCAACCAGCATGACG
AGGGAAGGACAGTCGAAACAGTGCGTGCGAAAGAGAACAATGCAAACATG
AGGGAGTTGAAAAAAGCACACAGCATTGCAAATAAGTTC back to topprotein sequence of NO04G01960.2 >NO04G01960.2-protein ID=NO04G01960.2-protein|Name=NO04G01960.2|organism=Nannochloropsis oceanica|type=polypeptide|length=448bp
MAASSQVKPVDMLMIGTGEYTTGYVYGEASDSDKSAGVVALTMFDLRRRG
KVGRLGLCGTNGKKFPGIRAHMDRAIGQTYSGLDMTMDTFPADDETDPKA
YEMALQRFKSGDAVTVFTPDDTHFDIALACVQRGLHVLVTKPVVKTLAEH
RLLKEAAEKAGVLVMVEVHKRFDPIYLDAKDKIQELGDFSYMYSYMSQPK
HQLDTFRAWAGKASDISYYLNSHHTDFHEWAVQGRSRPIRVTALASTGVA
TSQYKIDTEDTITLSVQWQNRGPNPSLGTGLYTSSWVAPKSDVHSQQRFF
YMGQGGEVNVDQAHRGYTMASDSYGGGGFKSVNPLFMKYTPSKGKFVGQR
GYGYMSFEAFVDAVAEIEGGRARVEDFDSSLATIGTTALTTAILEAGRRS
LDAGGRGMEIVYGEEADKAWAMPATVGEGGKEGGMHPFPTDIKPVVF* back to topmRNA from alignment at chr4:575763..577765- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO04G01960.2 ID=NO04G01960.2|Name=NO04G01960.2|organism=Nannochloropsis oceanica|type=mRNA|length=2003bp|location=Sequence derived from alignment at chr4:575763..577765- (Nannochloropsis oceanica)
CCCGCTTGGTCTTGCATTGCTTTTATTGTTTTGTTCTGGTCCTCACGGCA
CCTTTGTGATAGGGCTTCGTTGCAACAGCATCTCCTTGCCGGTGTGCAAC
CCTTTAAGTCGCTGCCCTCTCAGCCCCAACCACAGGCCTTTCCTCTTCTC
TTCATCTTTCCCATACACGTTATCATCATCTGCAGCAGCAACAGCACAGC
AGATCCCTTGTTCTCACAAACATGGCTGCATCAAGCCAAGTGAAGCCTGT
GGACATGTTGATGATCGGGTACGTGCAGCAGACTGTGGGTGGAGACGTGT
GCTTGACCCTACGGGGGTATGTGATGTTGTGTGAGAGTTGTGAGCTCTTC
ACTCTCGCTCTTTGCAGCACTTTCACCTGCATGCATGTCTTCATGTCAAT
GATGCGTGGAAAGGCTCGTCCAAGGTTGAACGATCTTGCACTCACGATCC
CTCGTCTCTTCCCCTTCTCTTCCTTGCCTCAGCACGGGCGAATACACCAC
CGGCTACGTCTACGGTGAAGCCTCAGATTCAGACAAAAGTGCGGGTGTAG
TAGCTCTTACCATGTTTGATCTTCGCCGTCGGGGCAAGGTGGGTAGGCTT
GGGCTCTGTGGGACAAATGGAAAAAAGTTCCCAGGAATCCGTGCGCATAT
GGACCGTGCCATCGGACAGACTTACAGTGGGCTTGACATGACAATGGACA
CTTTTCCGGCCGATGACGAGACAGATCCCAAGGCATATGAAATGGCGCTT
CAAAGATTCAAATCGGGGGATGCCGTCACTGTCTTTACGCCTGACGACAC
GCATTTTGATATTGCCCTCGCGTGTGTCCAACGTGGGTTGCACGTGCTCG
TGACGAAGCCCGTCGTCAAAACCCTGGCGGAACATCGTCTGCTCAAGGAG
GCGGCAGAGAAGGCAGGGGTGTTGGTGATGGTCGAAGTACATAAACGCTT
CGATCCCATCTACCTCGATGCCAAGGACAAAATCCAAGAGCTAGGCGATT
TCTCTTACATGTACTCCTACATGTCCCAGCCCAAGCATCAACTCGATACC
TTCCGTGCCTGGGCAGGAAAAGCCTCTGATATCTCCTACTACCTCAACTC
CCACCACACTGATTTTCACGAATGGGCCGTGCAAGGACGGTCCCGCCCCA
TCCGCGTCACTGCCCTCGCTTCCACCGGCGTGGCTACAAGCCAATATAAA
ATCGACACAGAGGACACGATTACCCTGTCCGTGCAATGGCAGAACCGCGG
GCCAAACCCCAGTCTAGGCACGGGTCTCTATACTTCTTCGTGGGTGGCGC
CCAAGTCAGACGTGCATTCCCAGCAGAGGTTTTTTTACATGGGGCAGGGG
GGGGAGGTTAATGTTGACCAGGCCCACCGAGGGTACACAATGGCGAGTGA
TAGCTACGGAGGAGGGGGCTTTAAGAGTGTCAATCCTTTGTTCATGAAAT
ACACGCCCAGTAAAGGTAAATTTGTTGGGCAACGTGGGTATGGATATATG
AGTTTTGAGGCATTTGTGGATGCTGTAGCGGAGATAGAGGGGGGGAGGGC
GAGAGTGGAGGACTTTGACTCGAGCCTGGCGACGATTGGGACGACGGCCT
TGACCACAGCGATTTTGGAGGCAGGAAGACGCTCGTTGGATGCGGGGGGG
AGGGGGATGGAGATTGTGTATGGGGAGGAGGCGGATAAGGCATGGGCGAT
GCCGGCGACAGTGGGGGAGGGAGGGAAAGAGGGAGGTATGCACCCGTTCC
CGACGGATATAAAACCGGTAGTGTTTTAGAGGAAGGATAGGCGGGAGGAG
GGGCGGGAGAAAGGGGCACCCTAAAATCGAAACGAAGAAAAGAGAACAAG
AAAAGGCGGAATTGACAAATAATAAAATGGGGCAAATGGCGAGATGCAAC
CAACCAGCATGACGAGGGAAGGACAGTCGAAACAGTGCGTGCGAAAGAGA
ACAATGCAAACATGAGGGAGTTGAAAAAAGCACACAGCATTGCAAATAAG
TTC back to topCoding sequence (CDS) from alignment at chr4:575763..577765- >NO04G01960.2 ID=NO04G01960.2|Name=NO04G01960.2|organism=Nannochloropsis oceanica|type=CDS|length=1344bp|location=Sequence derived from alignment at chr4:575763..577765- (Nannochloropsis oceanica)
ATGGCTGCATCAAGCCAAGTGAAGCCTGTGGACATGTTGATGATCGGCAC
GGGCGAATACACCACCGGCTACGTCTACGGTGAAGCCTCAGATTCAGACA
AAAGTGCGGGTGTAGTAGCTCTTACCATGTTTGATCTTCGCCGTCGGGGC
AAGGTGGGTAGGCTTGGGCTCTGTGGGACAAATGGAAAAAAGTTCCCAGG
AATCCGTGCGCATATGGACCGTGCCATCGGACAGACTTACAGTGGGCTTG
ACATGACAATGGACACTTTTCCGGCCGATGACGAGACAGATCCCAAGGCA
TATGAAATGGCGCTTCAAAGATTCAAATCGGGGGATGCCGTCACTGTCTT
TACGCCTGACGACACGCATTTTGATATTGCCCTCGCGTGTGTCCAACGTG
GGTTGCACGTGCTCGTGACGAAGCCCGTCGTCAAAACCCTGGCGGAACAT
CGTCTGCTCAAGGAGGCGGCAGAGAAGGCAGGGGTGTTGGTGATGGTCGA
AGTACATAAACGCTTCGATCCCATCTACCTCGATGCCAAGGACAAAATCC
AAGAGCTAGGCGATTTCTCTTACATGTACTCCTACATGTCCCAGCCCAAG
CATCAACTCGATACCTTCCGTGCCTGGGCAGGAAAAGCCTCTGATATCTC
CTACTACCTCAACTCCCACCACACTGATTTTCACGAATGGGCCGTGCAAG
GACGGTCCCGCCCCATCCGCGTCACTGCCCTCGCTTCCACCGGCGTGGCT
ACAAGCCAATATAAAATCGACACAGAGGACACGATTACCCTGTCCGTGCA
ATGGCAGAACCGCGGGCCAAACCCCAGTCTAGGCACGGGTCTCTATACTT
CTTCGTGGGTGGCGCCCAAGTCAGACGTGCATTCCCAGCAGAGGTTTTTT
TACATGGGGCAGGGGGGGGAGGTTAATGTTGACCAGGCCCACCGAGGGTA
CACAATGGCGAGTGATAGCTACGGAGGAGGGGGCTTTAAGAGTGTCAATC
CTTTGTTCATGAAATACACGCCCAGTAAAGGTAAATTTGTTGGGCAACGT
GGGTATGGATATATGAGTTTTGAGGCATTTGTGGATGCTGTAGCGGAGAT
AGAGGGGGGGAGGGCGAGAGTGGAGGACTTTGACTCGAGCCTGGCGACGA
TTGGGACGACGGCCTTGACCACAGCGATTTTGGAGGCAGGAAGACGCTCG
TTGGATGCGGGGGGGAGGGGGATGGAGATTGTGTATGGGGAGGAGGCGGA
TAAGGCATGGGCGATGCCGGCGACAGTGGGGGAGGGAGGGAAAGAGGGAG
GTATGCACCCGTTCCCGACGGATATAAAACCGGTAGTGTTTTAG back to top
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