NO04G01950.1, NO04G01950.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO04G01950.1
Unique NameNO04G01950.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1458
Alignment locationchr4:573729..575372 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:573729..575372 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO04G01950.1 vs.
Match: EWM28575.1 (Membrane insertion protein, OxaA/YidC [Nannochloropsis gaditana])

HSP 1 Score: 631.7 bits (1628), Expect = 1.900e-177
Identity = 340/463 (73.43%), Postives = 378/463 (81.64%), Query Frame = 0 
Query:   27 RRMIMKQQQEGMRRRGSGAVWMVVATLLFCLDFTMAFVPSASRLARPHGAVVAH----RSSSSGSCSLRMILNPHDVMGHADPAWLSHVFQGVADAAVATLDTTTATVDAVADAAEKEPGFFDKFVNVVMGAIESVHAGLVSLGVPGAYGTAIILFTSGVKLALLPVTYKQLESAQRMQALAPKAKELKDKYGKNKALLNQLTAKLYEDAEVNPLAGCLPALAQIPIFIALYRSLINLAGNSDFNEPFLWLPSLAGPVYGQQRGMDWLTQNWVENVPSLGWHDTIAYLSIPCILILTQSISQRLLTPPSDDPKAAQTQRILKYLPLMVGYFSLSVPSGLGLYWITNNLISTAISLTIKEKFARNPIVIDVDVDPEDLGYDPSTVVMSFEDMMAEAQQNALPSREPKRKRPTPSAAGFTLAAKGSDSRSSISDGFEGREGGNGDEQEGGVGSKIEEREKAGVDA 486
            +R + +QQQ   RR GS    +++A+LLF  +   AFVP A+R  RP    V+       ++ G+ +LRM+L PHDV+ H DPAWLSHVFQGVADAAV +LD T A VDA  DAA KEPGFFDKFVN VMGAIE VH+ LVSLGVPGAYG AIILFT+GVKLALLPVTYKQ+ESAQRMQALAPKAKELKDKYGKNKALLNQLTAKLYEDAEVNPLAGCLPALAQIPIFIALYRSLINLAGNSDFNEPFLWLPSLAGP+YGQ RG DWL +NWV+ VP+LGWHDTIA+L+IP ILILTQSISQRLLTPPSDDPK AQTQR+LKYLP+MVGYFSLSVPSGLG+YWITNNLISTAIS++IKEKFA+ PIVIDVDVDPEDLGYDPSTV M FE+MMAEA +NALPS +PKR RPTPS            S    S+     EGG  DE+ G VG   EEREKAGV+A
Sbjct:   44 QREMWRQQQCLGRRLGSCIFCLLMASLLFTSEVVTAFVPVATR--RPDLLHVSRPPFPSRATPGTRALRMVLQPHDVVTHLDPAWLSHVFQGVADAAVTSLDATNAAVDATTDAAAKEPGFFDKFVNTVMGAIEGVHSELVSLGVPGAYGLAIILFTAGVKLALLPVTYKQMESAQRMQALAPKAKELKDKYGKNKALLNQLTAKLYEDAEVNPLAGCLPALAQIPIFIALYRSLINLAGNSDFNEPFLWLPSLAGPLYGQARGTDWLFKNWVDGVPALGWHDTIAFLTIPVILILTQSISQRLLTPPSDDPKTAQTQRVLKYLPIMVGYFSLSVPSGLGVYWITNNLISTAISISIKEKFAKQPIVIDVDVDPEDLGYDPSTVAMGFEEMMAEATRNALPSEQPKRDRPTPS------------SLLKASESVVAEEGGKRDEEAGRVG---EEREKAGVEA 489
The following BLAST results are available for this feature:
BLAST of NO04G01950.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28575.11.900e-17773.43Membrane insertion protein, OxaA/YidC [Nannochloro... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO04G01950NO04G01950Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO04G01950.1NO04G01950.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO04G01950.1.cds1NO04G01950.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G01950.1.cds2NO04G01950.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO04G01950.1 ID=NO04G01950.1|Name=NO04G01950.1|organism=Nannochloropsis oceanica|type=mRNA|length=1458bp
ATGGAGGGAGCAAAAAGCGAGCAGGGGGATATCAAGTCATCAAGTTGCTG
TGCGCCTGGCGGGTTACTTATGGAAGCAAGAAGGATGATCATGAAGCAGC
AGCAGGAGGGAATGAGAAGAAGGGGATCAGGAGCAGTATGGATGGTGGTG
GCGACGCTTCTGTTTTGCCTCGACTTCACCATGGCATTTGTGCCCTCTGC
TAGCCGCCTTGCCCGCCCGCATGGCGCCGTCGTCGCCCATCGTAGCAGCA
GCAGCGGCAGCTGCAGCTTGCGGATGATCCTAAACCCGCACGACGTTATG
GGGCACGCGGATCCGGCCTGGCTCTCACATGTCTTCCAAGGTGTGGCGGA
CGCAGCAGTAGCGACCTTAGACACAACGACAGCCACCGTCGATGCTGTAG
CCGACGCTGCTGAAAAAGAACCGGGTTTTTTTGACAAGTTTGTTAATGTT
GTCATGGGTGCCATTGAAAGCGTGCATGCTGGCTTGGTCTCGTTGGGCGT
CCCAGGAGCGTATGGAACGGCTATCATCTTATTCACCTCTGGGGTCAAGC
TCGCCTTGCTGCCCGTCACGTACAAGCAATTGGAGTCAGCCCAAAGAATG
CAAGCCCTTGCGCCAAAGGCCAAGGAGCTCAAAGACAAGTATGGTAAGAA
CAAGGCGTTGCTCAACCAGCTCACAGCCAAGCTGTACGAGGACGCGGAGG
TGAACCCTCTGGCCGGGTGCTTGCCTGCCCTCGCTCAAATCCCCATTTTT
ATCGCCCTGTACCGATCGTTGATCAACCTGGCGGGGAACAGTGATTTTAA
CGAGCCTTTCCTATGGTTGCCTAGTCTGGCAGGGCCCGTGTACGGCCAGC
AAAGGGGAATGGACTGGTTGACGCAAAATTGGGTGGAAAACGTGCCCTCG
CTGGGGTGGCATGACACAATTGCTTACCTGTCGATCCCATGTATTTTAAT
TTTGACGCAATCCATCTCCCAGCGGCTGTTGACACCTCCGAGCGACGACC
CCAAGGCAGCGCAAACGCAAAGGATTTTGAAGTATTTGCCGTTAATGGTC
GGTTATTTCTCGTTAAGTGTTCCTTCGGGTTTGGGCTTGTACTGGATCAC
GAATAATTTGATTTCGACAGCGATTTCTCTGACCATCAAAGAGAAATTTG
CAAGGAATCCGATCGTTATTGACGTGGATGTAGATCCGGAGGATTTGGGC
TATGATCCCTCTACGGTGGTGATGTCGTTTGAAGACATGATGGCAGAGGC
TCAACAGAATGCATTGCCCTCCCGAGAGCCGAAGCGGAAGAGGCCGACGC
CTTCTGCAGCTGGGTTTACGCTAGCGGCAAAGGGCAGTGATAGCCGTAGC
AGTATAAGTGATGGGTTTGAGGGGAGGGAGGGAGGAAATGGGGACGAGCA
GGAGGGTGGGGTAGGGTCCAAGATAGAGGAGAGAGAGAAAGCGGGAGTGG
ACGCATGA
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protein sequence of NO04G01950.1

>NO04G01950.1-protein ID=NO04G01950.1-protein|Name=NO04G01950.1|organism=Nannochloropsis oceanica|type=polypeptide|length=486bp
MEGAKSEQGDIKSSSCCAPGGLLMEARRMIMKQQQEGMRRRGSGAVWMVV
ATLLFCLDFTMAFVPSASRLARPHGAVVAHRSSSSGSCSLRMILNPHDVM
GHADPAWLSHVFQGVADAAVATLDTTTATVDAVADAAEKEPGFFDKFVNV
VMGAIESVHAGLVSLGVPGAYGTAIILFTSGVKLALLPVTYKQLESAQRM
QALAPKAKELKDKYGKNKALLNQLTAKLYEDAEVNPLAGCLPALAQIPIF
IALYRSLINLAGNSDFNEPFLWLPSLAGPVYGQQRGMDWLTQNWVENVPS
LGWHDTIAYLSIPCILILTQSISQRLLTPPSDDPKAAQTQRILKYLPLMV
GYFSLSVPSGLGLYWITNNLISTAISLTIKEKFARNPIVIDVDVDPEDLG
YDPSTVVMSFEDMMAEAQQNALPSREPKRKRPTPSAAGFTLAAKGSDSRS
SISDGFEGREGGNGDEQEGGVGSKIEEREKAGVDA*
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mRNA from alignment at chr4:573729..575372+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO04G01950.1 ID=NO04G01950.1|Name=NO04G01950.1|organism=Nannochloropsis oceanica|type=mRNA|length=1644bp|location=Sequence derived from alignment at chr4:573729..575372+ (Nannochloropsis oceanica)
ATGGAGGGAGCAAAAAGCGAGCAGGGGGATATCAAGTCATCAAGTTGCTG
TGCGCCTGGCGGGTTACTTATGGAAGCAAGGTATTGTTCACGGCCCTGTT
TCATAGGCGGCATGCTTCTGCCCGTGTCCACATGCGGCTGTAGCACTGGC
CTACACGACAATTGATGAAGTCCGATCCCGCATTGCACACAACCCTCCCT
CATTTCCACTTCTCTTTTTCATTTCTTATCATACGTACAACACACTCGAT
GCATCACATAATACAGAAGGATGATCATGAAGCAGCAGCAGGAGGGAATG
AGAAGAAGGGGATCAGGAGCAGTATGGATGGTGGTGGCGACGCTTCTGTT
TTGCCTCGACTTCACCATGGCATTTGTGCCCTCTGCTAGCCGCCTTGCCC
GCCCGCATGGCGCCGTCGTCGCCCATCGTAGCAGCAGCAGCGGCAGCTGC
AGCTTGCGGATGATCCTAAACCCGCACGACGTTATGGGGCACGCGGATCC
GGCCTGGCTCTCACATGTCTTCCAAGGTGTGGCGGACGCAGCAGTAGCGA
CCTTAGACACAACGACAGCCACCGTCGATGCTGTAGCCGACGCTGCTGAA
AAAGAACCGGGTTTTTTTGACAAGTTTGTTAATGTTGTCATGGGTGCCAT
TGAAAGCGTGCATGCTGGCTTGGTCTCGTTGGGCGTCCCAGGAGCGTATG
GAACGGCTATCATCTTATTCACCTCTGGGGTCAAGCTCGCCTTGCTGCCC
GTCACGTACAAGCAATTGGAGTCAGCCCAAAGAATGCAAGCCCTTGCGCC
AAAGGCCAAGGAGCTCAAAGACAAGTATGGTAAGAACAAGGCGTTGCTCA
ACCAGCTCACAGCCAAGCTGTACGAGGACGCGGAGGTGAACCCTCTGGCC
GGGTGCTTGCCTGCCCTCGCTCAAATCCCCATTTTTATCGCCCTGTACCG
ATCGTTGATCAACCTGGCGGGGAACAGTGATTTTAACGAGCCTTTCCTAT
GGTTGCCTAGTCTGGCAGGGCCCGTGTACGGCCAGCAAAGGGGAATGGAC
TGGTTGACGCAAAATTGGGTGGAAAACGTGCCCTCGCTGGGGTGGCATGA
CACAATTGCTTACCTGTCGATCCCATGTATTTTAATTTTGACGCAATCCA
TCTCCCAGCGGCTGTTGACACCTCCGAGCGACGACCCCAAGGCAGCGCAA
ACGCAAAGGATTTTGAAGTATTTGCCGTTAATGGTCGGTTATTTCTCGTT
AAGTGTTCCTTCGGGTTTGGGCTTGTACTGGATCACGAATAATTTGATTT
CGACAGCGATTTCTCTGACCATCAAAGAGAAATTTGCAAGGAATCCGATC
GTTATTGACGTGGATGTAGATCCGGAGGATTTGGGCTATGATCCCTCTAC
GGTGGTGATGTCGTTTGAAGACATGATGGCAGAGGCTCAACAGAATGCAT
TGCCCTCCCGAGAGCCGAAGCGGAAGAGGCCGACGCCTTCTGCAGCTGGG
TTTACGCTAGCGGCAAAGGGCAGTGATAGCCGTAGCAGTATAAGTGATGG
GTTTGAGGGGAGGGAGGGAGGAAATGGGGACGAGCAGGAGGGTGGGGTAG
GGTCCAAGATAGAGGAGAGAGAGAAAGCGGGAGTGGACGCATGA
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Coding sequence (CDS) from alignment at chr4:573729..575372+

>NO04G01950.1 ID=NO04G01950.1|Name=NO04G01950.1|organism=Nannochloropsis oceanica|type=CDS|length=1458bp|location=Sequence derived from alignment at chr4:573729..575372+ (Nannochloropsis oceanica)
ATGGAGGGAGCAAAAAGCGAGCAGGGGGATATCAAGTCATCAAGTTGCTG
TGCGCCTGGCGGGTTACTTATGGAAGCAAGAAGGATGATCATGAAGCAGC
AGCAGGAGGGAATGAGAAGAAGGGGATCAGGAGCAGTATGGATGGTGGTG
GCGACGCTTCTGTTTTGCCTCGACTTCACCATGGCATTTGTGCCCTCTGC
TAGCCGCCTTGCCCGCCCGCATGGCGCCGTCGTCGCCCATCGTAGCAGCA
GCAGCGGCAGCTGCAGCTTGCGGATGATCCTAAACCCGCACGACGTTATG
GGGCACGCGGATCCGGCCTGGCTCTCACATGTCTTCCAAGGTGTGGCGGA
CGCAGCAGTAGCGACCTTAGACACAACGACAGCCACCGTCGATGCTGTAG
CCGACGCTGCTGAAAAAGAACCGGGTTTTTTTGACAAGTTTGTTAATGTT
GTCATGGGTGCCATTGAAAGCGTGCATGCTGGCTTGGTCTCGTTGGGCGT
CCCAGGAGCGTATGGAACGGCTATCATCTTATTCACCTCTGGGGTCAAGC
TCGCCTTGCTGCCCGTCACGTACAAGCAATTGGAGTCAGCCCAAAGAATG
CAAGCCCTTGCGCCAAAGGCCAAGGAGCTCAAAGACAAGTATGGTAAGAA
CAAGGCGTTGCTCAACCAGCTCACAGCCAAGCTGTACGAGGACGCGGAGG
TGAACCCTCTGGCCGGGTGCTTGCCTGCCCTCGCTCAAATCCCCATTTTT
ATCGCCCTGTACCGATCGTTGATCAACCTGGCGGGGAACAGTGATTTTAA
CGAGCCTTTCCTATGGTTGCCTAGTCTGGCAGGGCCCGTGTACGGCCAGC
AAAGGGGAATGGACTGGTTGACGCAAAATTGGGTGGAAAACGTGCCCTCG
CTGGGGTGGCATGACACAATTGCTTACCTGTCGATCCCATGTATTTTAAT
TTTGACGCAATCCATCTCCCAGCGGCTGTTGACACCTCCGAGCGACGACC
CCAAGGCAGCGCAAACGCAAAGGATTTTGAAGTATTTGCCGTTAATGGTC
GGTTATTTCTCGTTAAGTGTTCCTTCGGGTTTGGGCTTGTACTGGATCAC
GAATAATTTGATTTCGACAGCGATTTCTCTGACCATCAAAGAGAAATTTG
CAAGGAATCCGATCGTTATTGACGTGGATGTAGATCCGGAGGATTTGGGC
TATGATCCCTCTACGGTGGTGATGTCGTTTGAAGACATGATGGCAGAGGC
TCAACAGAATGCATTGCCCTCCCGAGAGCCGAAGCGGAAGAGGCCGACGC
CTTCTGCAGCTGGGTTTACGCTAGCGGCAAAGGGCAGTGATAGCCGTAGC
AGTATAAGTGATGGGTTTGAGGGGAGGGAGGGAGGAAATGGGGACGAGCA
GGAGGGTGGGGTAGGGTCCAAGATAGAGGAGAGAGAGAAAGCGGGAGTGG
ACGCATGA
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Synonyms
Publications