NO04G01880.1, NO04G01880.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO04G01880.1
Unique NameNO04G01880.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length966
Alignment locationchr4:546715..547680 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:546715..547680 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO04G01880.1 vs.
Match: EWM28619.1 (impact-like protein [Nannochloropsis gaditana])

HSP 1 Score: 441.4 bits (1134), Expect = 2.400e-120
Identity = 213/307 (69.38%), Postives = 257/307 (83.71%), Query Frame = 0 
Query:    6 EQESITARRNEEVESLLLIYTEDLVKVMQQGDEYLVEIKLGKAENDENSRTVVLKIYLPPSYPSPGAEMPCFELRGINWSNPMHDQAHIYDGLRDIFHNQAGEVILFPWCEWLKEELHLLPITHSTAAEEGSGEKGDNHDSHDCEHIIN----NGSVLTPQAAARRHGLELIHGVPFTERKSTFQAHLARITTEKDARTVIECLLLDRKIQRASHNMYAFRVFDVKKQAQVNDNDDDGENAAGGKLAELIAVMGVNNVVIVVSRWWGGVLLGPSRFRVINNTARQLLEQCGMDRKERGMGKEEEGAG 309
            EQE+I A+R+EE+ES+ LIYT+DLV V+    + +VE+KLG+A + E SRTV L +YLP SYPSPGAEMP FE+RG+NWSNP HDQ HIY+G++++F  QAGEV+LF WCEWLKEELHLLPITHSTAA+E   E+  + +   C+  ++    +   LTPQ AAR+HGL+L+HG P TER+STFQAHLARIT+E+DARTV+ECL LDRKIQRA+HNMYAFRVFDV+KQAQVNDNDDDGENAAGGKLAEL+AVMGVNNV++VVSRWWGG+LLGPSRFRVINNTARQLLEQCG+    RG   E+EG G
Sbjct:    7 EQEAIKAQRDEEIESIKLIYTDDLVNVLNHPQDCVVEVKLGEAIDGETSRTVTLTVYLPVSYPSPGAEMPFFEVRGVNWSNPKHDQIHIYEGMQEVFRQQAGEVVLFSWCEWLKEELHLLPITHSTAADEQVEEQETSGERDKCDRALDGTRSDDGALTPQYAARQHGLDLVHGAPLTERRSTFQAHLARITSERDARTVLECLKLDRKIQRATHNMYAFRVFDVQKQAQVNDNDDDGENAAGGKLAELLAVMGVNNVIVVVSRWWGGLLLGPSRFRVINNTARQLLEQCGV----RGRSGEKEGGG 309
The following BLAST results are available for this feature:
BLAST of NO04G01880.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28619.12.400e-12069.38impact-like protein [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO04G01880NO04G01880Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO04G01880.1NO04G01880.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO04G01880.1.cds1NO04G01880.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO04G01880.1 ID=NO04G01880.1|Name=NO04G01880.1|organism=Nannochloropsis oceanica|type=mRNA|length=966bp
ATGGAGGAGCCGCAGGAACAGGAAAGCATTACGGCACGACGCAACGAGGA
AGTCGAAAGCCTGCTGCTCATCTACACCGAGGATTTGGTCAAGGTTATGC
AACAAGGGGACGAATATTTGGTGGAGATCAAACTGGGCAAGGCCGAGAAT
GACGAGAATTCCAGGACGGTGGTCCTCAAGATCTACTTGCCTCCTTCGTA
TCCTTCCCCTGGTGCGGAGATGCCGTGCTTTGAGCTGCGAGGGATTAATT
GGTCAAATCCCATGCACGATCAGGCGCACATTTACGATGGATTGCGAGAT
ATTTTTCATAACCAAGCGGGAGAAGTGATCCTGTTCCCGTGGTGTGAATG
GCTAAAGGAGGAGCTGCATTTGCTGCCCATCACGCACAGCACCGCCGCGG
AGGAGGGAAGCGGGGAGAAAGGAGATAACCATGACAGCCATGACTGTGAG
CATATAATCAACAACGGTAGTGTTCTCACCCCGCAGGCAGCAGCAAGACG
ACACGGTTTAGAGCTTATACACGGCGTGCCCTTCACTGAACGAAAAAGCA
CGTTCCAGGCCCACTTGGCACGCATTACCACCGAAAAAGACGCCCGCACC
GTTATTGAATGCCTCCTCCTCGATCGGAAAATCCAACGGGCATCGCATAA
TATGTACGCGTTTCGTGTTTTCGATGTAAAGAAACAAGCTCAGGTGAATG
ATAATGATGACGACGGCGAAAATGCTGCAGGGGGGAAACTTGCTGAATTG
ATAGCTGTGATGGGTGTGAACAATGTGGTGATTGTGGTGAGTCGGTGGTG
GGGGGGTGTGCTACTGGGCCCGTCAAGATTTCGAGTGATTAACAATACAG
CAAGGCAGTTGTTGGAGCAGTGCGGGATGGATAGGAAGGAGCGAGGGATG
GGAAAGGAGGAGGAGGGAGCGGGACATCATCATCGGCGTTTGAAGGGAGT
AAATGGTTGTAAATGA
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protein sequence of NO04G01880.1

>NO04G01880.1-protein ID=NO04G01880.1-protein|Name=NO04G01880.1|organism=Nannochloropsis oceanica|type=polypeptide|length=322bp
MEEPQEQESITARRNEEVESLLLIYTEDLVKVMQQGDEYLVEIKLGKAEN
DENSRTVVLKIYLPPSYPSPGAEMPCFELRGINWSNPMHDQAHIYDGLRD
IFHNQAGEVILFPWCEWLKEELHLLPITHSTAAEEGSGEKGDNHDSHDCE
HIINNGSVLTPQAAARRHGLELIHGVPFTERKSTFQAHLARITTEKDART
VIECLLLDRKIQRASHNMYAFRVFDVKKQAQVNDNDDDGENAAGGKLAEL
IAVMGVNNVVIVVSRWWGGVLLGPSRFRVINNTARQLLEQCGMDRKERGM
GKEEEGAGHHHRRLKGVNGCK*
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mRNA from alignment at chr4:546715..547680+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO04G01880.1 ID=NO04G01880.1|Name=NO04G01880.1|organism=Nannochloropsis oceanica|type=mRNA|length=966bp|location=Sequence derived from alignment at chr4:546715..547680+ (Nannochloropsis oceanica)
ATGGAGGAGCCGCAGGAACAGGAAAGCATTACGGCACGACGCAACGAGGA
AGTCGAAAGCCTGCTGCTCATCTACACCGAGGATTTGGTCAAGGTTATGC
AACAAGGGGACGAATATTTGGTGGAGATCAAACTGGGCAAGGCCGAGAAT
GACGAGAATTCCAGGACGGTGGTCCTCAAGATCTACTTGCCTCCTTCGTA
TCCTTCCCCTGGTGCGGAGATGCCGTGCTTTGAGCTGCGAGGGATTAATT
GGTCAAATCCCATGCACGATCAGGCGCACATTTACGATGGATTGCGAGAT
ATTTTTCATAACCAAGCGGGAGAAGTGATCCTGTTCCCGTGGTGTGAATG
GCTAAAGGAGGAGCTGCATTTGCTGCCCATCACGCACAGCACCGCCGCGG
AGGAGGGAAGCGGGGAGAAAGGAGATAACCATGACAGCCATGACTGTGAG
CATATAATCAACAACGGTAGTGTTCTCACCCCGCAGGCAGCAGCAAGACG
ACACGGTTTAGAGCTTATACACGGCGTGCCCTTCACTGAACGAAAAAGCA
CGTTCCAGGCCCACTTGGCACGCATTACCACCGAAAAAGACGCCCGCACC
GTTATTGAATGCCTCCTCCTCGATCGGAAAATCCAACGGGCATCGCATAA
TATGTACGCGTTTCGTGTTTTCGATGTAAAGAAACAAGCTCAGGTGAATG
ATAATGATGACGACGGCGAAAATGCTGCAGGGGGGAAACTTGCTGAATTG
ATAGCTGTGATGGGTGTGAACAATGTGGTGATTGTGGTGAGTCGGTGGTG
GGGGGGTGTGCTACTGGGCCCGTCAAGATTTCGAGTGATTAACAATACAG
CAAGGCAGTTGTTGGAGCAGTGCGGGATGGATAGGAAGGAGCGAGGGATG
GGAAAGGAGGAGGAGGGAGCGGGACATCATCATCGGCGTTTGAAGGGAGT
AAATGGTTGTAAATGA
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Coding sequence (CDS) from alignment at chr4:546715..547680+

>NO04G01880.1 ID=NO04G01880.1|Name=NO04G01880.1|organism=Nannochloropsis oceanica|type=CDS|length=966bp|location=Sequence derived from alignment at chr4:546715..547680+ (Nannochloropsis oceanica)
ATGGAGGAGCCGCAGGAACAGGAAAGCATTACGGCACGACGCAACGAGGA
AGTCGAAAGCCTGCTGCTCATCTACACCGAGGATTTGGTCAAGGTTATGC
AACAAGGGGACGAATATTTGGTGGAGATCAAACTGGGCAAGGCCGAGAAT
GACGAGAATTCCAGGACGGTGGTCCTCAAGATCTACTTGCCTCCTTCGTA
TCCTTCCCCTGGTGCGGAGATGCCGTGCTTTGAGCTGCGAGGGATTAATT
GGTCAAATCCCATGCACGATCAGGCGCACATTTACGATGGATTGCGAGAT
ATTTTTCATAACCAAGCGGGAGAAGTGATCCTGTTCCCGTGGTGTGAATG
GCTAAAGGAGGAGCTGCATTTGCTGCCCATCACGCACAGCACCGCCGCGG
AGGAGGGAAGCGGGGAGAAAGGAGATAACCATGACAGCCATGACTGTGAG
CATATAATCAACAACGGTAGTGTTCTCACCCCGCAGGCAGCAGCAAGACG
ACACGGTTTAGAGCTTATACACGGCGTGCCCTTCACTGAACGAAAAAGCA
CGTTCCAGGCCCACTTGGCACGCATTACCACCGAAAAAGACGCCCGCACC
GTTATTGAATGCCTCCTCCTCGATCGGAAAATCCAACGGGCATCGCATAA
TATGTACGCGTTTCGTGTTTTCGATGTAAAGAAACAAGCTCAGGTGAATG
ATAATGATGACGACGGCGAAAATGCTGCAGGGGGGAAACTTGCTGAATTG
ATAGCTGTGATGGGTGTGAACAATGTGGTGATTGTGGTGAGTCGGTGGTG
GGGGGGTGTGCTACTGGGCCCGTCAAGATTTCGAGTGATTAACAATACAG
CAAGGCAGTTGTTGGAGCAGTGCGGGATGGATAGGAAGGAGCGAGGGATG
GGAAAGGAGGAGGAGGGAGCGGGACATCATCATCGGCGTTTGAAGGGAGT
AAATGGTTGTAAATGA
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Synonyms
Publications