NO04G01850.1, NO04G01850.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO04G01850.1
Unique NameNO04G01850.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1563
Alignment locationchr4:538252..539927 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:538252..539927 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO04G01850.1 vs.
Match: EWM28586.1 (gpi-anchored wall transfer protein [Nannochloropsis gaditana])

HSP 1 Score: 771.2 bits (1990), Expect = 2.100e-219
Identity = 403/531 (75.89%), Postives = 445/531 (83.80%), Query Frame = 0
Query:    1 MPMMDPTDYKAAKEAFVSNLNGTSLYEITLVTLPLPLALWAYTELRALRLIYSKPTPGLLLAFCYEFTLLILPQVIAQCLPNATLWVLLVLFVIAVVCRAIVQASREPALKSQWRHDRAVRLVSSHARNYLSNYRAGVMLTSSIAILAVDFTIFPRRFGKTEAFGTSLMDLGVGCFIFSSGFCSRAARLFHHHSEAAPGAAAAAGVSGVVIT----DDLYPQEGRKG-----GGHGGVSPPNSSS--RFFRFSKRAAMWRTSKRCLPLLLLGLGRILANRYVDYQEHVSEYGKRWNFFLTLAVIHLAATALHTVFPHKALFPLAIIVLVLYQMQLSAGGLTEYILEAPREGGFMRENREGVCGVIGFLCLYLIGEQIGTWTVWTMGVVGGGTKTTEAEARRALLHLVVLDAGLWLAAAATSSAVQPISRRLVNMSYVMWSAAYNVMVVTFLFAVDEFASMAATSRLLGAVNRNQLAFFICANLLTGAINLSIYTLYASPVVAWGVIGTYVLVLMLAFVLVDRAFNVTLKFW 521
            MP + P DYKAAKEAFVSNLNG+ LYEI  VT+PLP+ALWAYTELRA RL+YS PTPGLLLAFCYEF +LI PQ++AQC P +T WVL  L VI V CRA+VQA+REP+LKSQWRHDRAVRLVSS ARN+L NYRAGVMLTS+IAILAVDFTIFPRRFGKTE FGTSLMDLGVGCFIFSSGFCSRAARLFHHHSEAAPGAAAAAGVSGVV T         +E + G     G  GG   P SS     FRFSKRAAMWRT+KRC+PL+LLGLGR+LA R VDYQEHVSEYG  WNFFLTLAVI LA +ALHTVFPHKAL PLA+IVLVLYQMQLS  GLTEY+  APREG  + +NREG+ GVIGFLCLYLIGEQIGTWTVW MGVVGGGTK TEAEA+RALL LVVLDAGLW A A + + VQPISRRLVNMSYV+ S+AYNVMV+  L AVD FASMAATSRLL AVNRNQLAFFI ANLLTG +NLS++T+YASP V+W VI +Y LVL+  FV++DRAF+VTLKFW
Sbjct:    1 MPAIQPADYKAAKEAFVSNLNGSGLYEIIKVTIPLPVALWAYTELRAFRLVYSAPTPGLLLAFCYEFAVLIFPQILAQCWPESTPWVLAGLLVIGVSCRAVVQATREPSLKSQWRHDRAVRLVSSQARNFLINYRAGVMLTSAIAILAVDFTIFPRRFGKTETFGTSLMDLGVGCFIFSSGFCSRAARLFHHHSEAAPGAAAAAGVSGVVCTGGEGSGSEAKEAQGGWSLGRGDRGGCGTPTSSKGGELFRFSKRAAMWRTTKRCIPLVLLGLGRLLARRSVDYQEHVSEYGVHWNFFLTLAVIQLATSALHTVFPHKALSPLALIVLVLYQMQLSVNGLTEYMFTAPREGSLIAQNREGILGVIGFLCLYLIGEQIGTWTVWAMGVVGGGTKITEAEAKRALLQLVVLDAGLWGATALSCTLVQPISRRLVNMSYVLMSSAYNVMVIALLLAVDRFASMAATSRLLFAVNRNQLAFFILANLLTGGVNLSMHTIYASPFVSWVVISSYTLVLLAMFVMLDRAFDVTLKFW 531          
The following BLAST results are available for this feature:
BLAST of NO04G01850.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28586.12.100e-21975.89gpi-anchored wall transfer protein [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO04G01850NO04G01850Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO04G01850.1NO04G01850.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO04G01850.1.cds1NO04G01850.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G01850.1.cds2NO04G01850.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO04G01850.1 ID=NO04G01850.1|Name=NO04G01850.1|organism=Nannochloropsis oceanica|type=mRNA|length=1563bp
ATGCCTATGATGGACCCTACCGACTATAAGGCGGCCAAAGAAGCTTTCGT
CTCCAACCTGAACGGCACGAGTCTCTACGAAATCACGTTAGTCACCCTCC
CCCTCCCCCTCGCCCTTTGGGCCTACACCGAGCTTCGAGCCCTCCGCCTC
ATCTACTCCAAACCCACCCCCGGCCTCCTCCTCGCCTTCTGTTACGAGTT
CACCCTCCTTATTCTCCCCCAAGTCATCGCGCAGTGTCTTCCAAACGCAA
CCCTCTGGGTGTTACTGGTCTTGTTTGTCATTGCGGTGGTTTGTCGGGCC
ATCGTGCAGGCCTCGCGGGAACCGGCCTTGAAAAGCCAATGGCGGCACGA
CCGAGCGGTCCGTCTCGTCTCTTCCCATGCCCGGAACTACCTGAGCAACT
ACCGTGCCGGGGTTATGCTCACCTCCTCCATCGCCATCCTAGCCGTCGAT
TTTACCATATTTCCCCGTCGCTTCGGGAAAACCGAGGCATTCGGCACAAG
TTTAATGGATCTAGGTGTCGGCTGCTTCATCTTCTCCAGTGGCTTCTGCT
CACGTGCTGCAAGACTGTTCCACCATCACAGCGAGGCCGCCCCTGGAGCA
GCAGCAGCAGCAGGAGTAAGTGGTGTAGTCATAACAGACGATTTGTACCC
ACAGGAAGGGAGGAAAGGAGGAGGGCATGGGGGGGTAAGCCCCCCAAATA
GTAGTAGCCGTTTCTTCCGTTTCTCCAAAAGAGCGGCCATGTGGCGCACA
AGCAAGCGCTGTCTTCCCCTTCTTCTGTTGGGCTTGGGTAGAATCCTAGC
GAATCGCTATGTAGATTACCAGGAGCACGTGAGTGAGTACGGGAAACGCT
GGAATTTTTTCTTGACTTTAGCAGTGATCCACTTGGCGGCTACTGCTTTG
CACACCGTGTTCCCCCACAAAGCGTTATTCCCTCTGGCGATAATCGTGTT
GGTCTTGTACCAGATGCAGTTGTCAGCGGGTGGGTTGACGGAGTATATAC
TCGAGGCACCGAGGGAGGGAGGGTTCATGAGGGAGAACAGAGAGGGTGTG
TGTGGTGTGATTGGGTTCTTGTGCCTGTATTTGATAGGCGAGCAGATAGG
GACGTGGACTGTCTGGACTATGGGGGTTGTTGGGGGGGGAACGAAGACGA
CTGAGGCGGAGGCCAGACGGGCGTTGTTGCATTTGGTGGTTTTGGATGCG
GGGTTGTGGCTGGCGGCAGCTGCGACCAGTTCTGCCGTGCAGCCTATTTC
GAGACGGTTGGTTAATATGAGCTATGTGATGTGGTCGGCAGCGTACAACG
TGATGGTGGTGACTTTTTTATTTGCGGTGGATGAGTTTGCGTCTATGGCG
GCGACATCACGGTTGCTTGGCGCGGTTAATCGGAATCAGTTGGCGTTTTT
TATTTGTGCGAACTTGTTGACAGGAGCGATAAATTTGAGCATATACACGC
TGTATGCAAGCCCTGTAGTGGCTTGGGGGGTGATTGGGACGTATGTGCTG
GTGTTAATGCTGGCCTTTGTGTTGGTGGATCGGGCGTTTAATGTCACGCT
GAAGTTTTGGTAG
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protein sequence of NO04G01850.1

>NO04G01850.1-protein ID=NO04G01850.1-protein|Name=NO04G01850.1|organism=Nannochloropsis oceanica|type=polypeptide|length=521bp
MPMMDPTDYKAAKEAFVSNLNGTSLYEITLVTLPLPLALWAYTELRALRL
IYSKPTPGLLLAFCYEFTLLILPQVIAQCLPNATLWVLLVLFVIAVVCRA
IVQASREPALKSQWRHDRAVRLVSSHARNYLSNYRAGVMLTSSIAILAVD
FTIFPRRFGKTEAFGTSLMDLGVGCFIFSSGFCSRAARLFHHHSEAAPGA
AAAAGVSGVVITDDLYPQEGRKGGGHGGVSPPNSSSRFFRFSKRAAMWRT
SKRCLPLLLLGLGRILANRYVDYQEHVSEYGKRWNFFLTLAVIHLAATAL
HTVFPHKALFPLAIIVLVLYQMQLSAGGLTEYILEAPREGGFMRENREGV
CGVIGFLCLYLIGEQIGTWTVWTMGVVGGGTKTTEAEARRALLHLVVLDA
GLWLAAAATSSAVQPISRRLVNMSYVMWSAAYNVMVVTFLFAVDEFASMA
ATSRLLGAVNRNQLAFFICANLLTGAINLSIYTLYASPVVAWGVIGTYVL
VLMLAFVLVDRAFNVTLKFW*
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mRNA from alignment at chr4:538252..539927-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO04G01850.1 ID=NO04G01850.1|Name=NO04G01850.1|organism=Nannochloropsis oceanica|type=mRNA|length=1676bp|location=Sequence derived from alignment at chr4:538252..539927- (Nannochloropsis oceanica)
ATGCCTATGATGGACCCTACCGACTATAAGGCGGCCAAAGAAGCTTTCGT CTCCAACCTGAACGGCACGAGTCTCTACGAAATCACGTTAGTCACCCTCC CCCTCCCCCTCGCCCTTTGGGCCTACACCGAGCTTCGAGCCCTCCGCCTC ATCTACTCCAAACCCACCCCCGGCCTCCTCCTCGCCTTCTGTTACGAGTT CACCCTCCTTATTCTCCCCCAAGTCATCGCGCAGTGTCTTCCAAACGCAA CCCTCTGGGTGTTACTGGTCTTGTTTGTCATTGCGGTGGTTTGTCGGGCC ATCGTGCAGGCCTCGCGGGAACCGGCCTTGAAAAGCCAATGGCGGCACGA CCGAGCGGGTAAGCTTATTCGTATTCATGATTAGACTCTCTACATTCAGT TTCATTTGGCAACATTTTTGACCATGTACCTTCCACCCTCATCCACTTTC CCCCTTCCCCAAAACCAATAGTCCGTCTCGTCTCTTCCCATGCCCGGAAC TACCTGAGCAACTACCGTGCCGGGGTTATGCTCACCTCCTCCATCGCCAT CCTAGCCGTCGATTTTACCATATTTCCCCGTCGCTTCGGGAAAACCGAGG CATTCGGCACAAGTTTAATGGATCTAGGTGTCGGCTGCTTCATCTTCTCC AGTGGCTTCTGCTCACGTGCTGCAAGACTGTTCCACCATCACAGCGAGGC CGCCCCTGGAGCAGCAGCAGCAGCAGGAGTAAGTGGTGTAGTCATAACAG ACGATTTGTACCCACAGGAAGGGAGGAAAGGAGGAGGGCATGGGGGGGTA AGCCCCCCAAATAGTAGTAGCCGTTTCTTCCGTTTCTCCAAAAGAGCGGC CATGTGGCGCACAAGCAAGCGCTGTCTTCCCCTTCTTCTGTTGGGCTTGG GTAGAATCCTAGCGAATCGCTATGTAGATTACCAGGAGCACGTGAGTGAG TACGGGAAACGCTGGAATTTTTTCTTGACTTTAGCAGTGATCCACTTGGC GGCTACTGCTTTGCACACCGTGTTCCCCCACAAAGCGTTATTCCCTCTGG CGATAATCGTGTTGGTCTTGTACCAGATGCAGTTGTCAGCGGGTGGGTTG ACGGAGTATATACTCGAGGCACCGAGGGAGGGAGGGTTCATGAGGGAGAA CAGAGAGGGTGTGTGTGGTGTGATTGGGTTCTTGTGCCTGTATTTGATAG GCGAGCAGATAGGGACGTGGACTGTCTGGACTATGGGGGTTGTTGGGGGG GGAACGAAGACGACTGAGGCGGAGGCCAGACGGGCGTTGTTGCATTTGGT GGTTTTGGATGCGGGGTTGTGGCTGGCGGCAGCTGCGACCAGTTCTGCCG TGCAGCCTATTTCGAGACGGTTGGTTAATATGAGCTATGTGATGTGGTCG GCAGCGTACAACGTGATGGTGGTGACTTTTTTATTTGCGGTGGATGAGTT TGCGTCTATGGCGGCGACATCACGGTTGCTTGGCGCGGTTAATCGGAATC AGTTGGCGTTTTTTATTTGTGCGAACTTGTTGACAGGAGCGATAAATTTG AGCATATACACGCTGTATGCAAGCCCTGTAGTGGCTTGGGGGGTGATTGG GACGTATGTGCTGGTGTTAATGCTGGCCTTTGTGTTGGTGGATCGGGCGT TTAATGTCACGCTGAAGTTTTGGTAG
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Coding sequence (CDS) from alignment at chr4:538252..539927-

>NO04G01850.1 ID=NO04G01850.1|Name=NO04G01850.1|organism=Nannochloropsis oceanica|type=CDS|length=1563bp|location=Sequence derived from alignment at chr4:538252..539927- (Nannochloropsis oceanica)
ATGCCTATGATGGACCCTACCGACTATAAGGCGGCCAAAGAAGCTTTCGT
CTCCAACCTGAACGGCACGAGTCTCTACGAAATCACGTTAGTCACCCTCC
CCCTCCCCCTCGCCCTTTGGGCCTACACCGAGCTTCGAGCCCTCCGCCTC
ATCTACTCCAAACCCACCCCCGGCCTCCTCCTCGCCTTCTGTTACGAGTT
CACCCTCCTTATTCTCCCCCAAGTCATCGCGCAGTGTCTTCCAAACGCAA
CCCTCTGGGTGTTACTGGTCTTGTTTGTCATTGCGGTGGTTTGTCGGGCC
ATCGTGCAGGCCTCGCGGGAACCGGCCTTGAAAAGCCAATGGCGGCACGA
CCGAGCGGTCCGTCTCGTCTCTTCCCATGCCCGGAACTACCTGAGCAACT
ACCGTGCCGGGGTTATGCTCACCTCCTCCATCGCCATCCTAGCCGTCGAT
TTTACCATATTTCCCCGTCGCTTCGGGAAAACCGAGGCATTCGGCACAAG
TTTAATGGATCTAGGTGTCGGCTGCTTCATCTTCTCCAGTGGCTTCTGCT
CACGTGCTGCAAGACTGTTCCACCATCACAGCGAGGCCGCCCCTGGAGCA
GCAGCAGCAGCAGGAGTAAGTGGTGTAGTCATAACAGACGATTTGTACCC
ACAGGAAGGGAGGAAAGGAGGAGGGCATGGGGGGGTAAGCCCCCCAAATA
GTAGTAGCCGTTTCTTCCGTTTCTCCAAAAGAGCGGCCATGTGGCGCACA
AGCAAGCGCTGTCTTCCCCTTCTTCTGTTGGGCTTGGGTAGAATCCTAGC
GAATCGCTATGTAGATTACCAGGAGCACGTGAGTGAGTACGGGAAACGCT
GGAATTTTTTCTTGACTTTAGCAGTGATCCACTTGGCGGCTACTGCTTTG
CACACCGTGTTCCCCCACAAAGCGTTATTCCCTCTGGCGATAATCGTGTT
GGTCTTGTACCAGATGCAGTTGTCAGCGGGTGGGTTGACGGAGTATATAC
TCGAGGCACCGAGGGAGGGAGGGTTCATGAGGGAGAACAGAGAGGGTGTG
TGTGGTGTGATTGGGTTCTTGTGCCTGTATTTGATAGGCGAGCAGATAGG
GACGTGGACTGTCTGGACTATGGGGGTTGTTGGGGGGGGAACGAAGACGA
CTGAGGCGGAGGCCAGACGGGCGTTGTTGCATTTGGTGGTTTTGGATGCG
GGGTTGTGGCTGGCGGCAGCTGCGACCAGTTCTGCCGTGCAGCCTATTTC
GAGACGGTTGGTTAATATGAGCTATGTGATGTGGTCGGCAGCGTACAACG
TGATGGTGGTGACTTTTTTATTTGCGGTGGATGAGTTTGCGTCTATGGCG
GCGACATCACGGTTGCTTGGCGCGGTTAATCGGAATCAGTTGGCGTTTTT
TATTTGTGCGAACTTGTTGACAGGAGCGATAAATTTGAGCATATACACGC
TGTATGCAAGCCCTGTAGTGGCTTGGGGGGTGATTGGGACGTATGTGCTG
GTGTTAATGCTGGCCTTTGTGTTGGTGGATCGGGCGTTTAATGTCACGCT
GAAGTTTTGGTAG
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Synonyms
Publications