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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr4 | genome | chr4:538252..539927 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO04G01850.1 vs.
Match: EWM28586.1 (gpi-anchored wall transfer protein [Nannochloropsis gaditana]) HSP 1 Score: 771.2 bits (1990), Expect = 2.100e-219 Identity = 403/531 (75.89%), Postives = 445/531 (83.80%), Query Frame = 0
Query: 1 MPMMDPTDYKAAKEAFVSNLNGTSLYEITLVTLPLPLALWAYTELRALRLIYSKPTPGLLLAFCYEFTLLILPQVIAQCLPNATLWVLLVLFVIAVVCRAIVQASREPALKSQWRHDRAVRLVSSHARNYLSNYRAGVMLTSSIAILAVDFTIFPRRFGKTEAFGTSLMDLGVGCFIFSSGFCSRAARLFHHHSEAAPGAAAAAGVSGVVIT----DDLYPQEGRKG-----GGHGGVSPPNSSS--RFFRFSKRAAMWRTSKRCLPLLLLGLGRILANRYVDYQEHVSEYGKRWNFFLTLAVIHLAATALHTVFPHKALFPLAIIVLVLYQMQLSAGGLTEYILEAPREGGFMRENREGVCGVIGFLCLYLIGEQIGTWTVWTMGVVGGGTKTTEAEARRALLHLVVLDAGLWLAAAATSSAVQPISRRLVNMSYVMWSAAYNVMVVTFLFAVDEFASMAATSRLLGAVNRNQLAFFICANLLTGAINLSIYTLYASPVVAWGVIGTYVLVLMLAFVLVDRAFNVTLKFW 521
MP + P DYKAAKEAFVSNLNG+ LYEI VT+PLP+ALWAYTELRA RL+YS PTPGLLLAFCYEF +LI PQ++AQC P +T WVL L VI V CRA+VQA+REP+LKSQWRHDRAVRLVSS ARN+L NYRAGVMLTS+IAILAVDFTIFPRRFGKTE FGTSLMDLGVGCFIFSSGFCSRAARLFHHHSEAAPGAAAAAGVSGVV T +E + G G GG P SS FRFSKRAAMWRT+KRC+PL+LLGLGR+LA R VDYQEHVSEYG WNFFLTLAVI LA +ALHTVFPHKAL PLA+IVLVLYQMQLS GLTEY+ APREG + +NREG+ GVIGFLCLYLIGEQIGTWTVW MGVVGGGTK TEAEA+RALL LVVLDAGLW A A + + VQPISRRLVNMSYV+ S+AYNVMV+ L AVD FASMAATSRLL AVNRNQLAFFI ANLLTG +NLS++T+YASP V+W VI +Y LVL+ FV++DRAF+VTLKFW
Sbjct: 1 MPAIQPADYKAAKEAFVSNLNGSGLYEIIKVTIPLPVALWAYTELRAFRLVYSAPTPGLLLAFCYEFAVLIFPQILAQCWPESTPWVLAGLLVIGVSCRAVVQATREPSLKSQWRHDRAVRLVSSQARNFLINYRAGVMLTSAIAILAVDFTIFPRRFGKTETFGTSLMDLGVGCFIFSSGFCSRAARLFHHHSEAAPGAAAAAGVSGVVCTGGEGSGSEAKEAQGGWSLGRGDRGGCGTPTSSKGGELFRFSKRAAMWRTTKRCIPLVLLGLGRLLARRSVDYQEHVSEYGVHWNFFLTLAVIQLATSALHTVFPHKALSPLALIVLVLYQMQLSVNGLTEYMFTAPREGSLIAQNREGILGVIGFLCLYLIGEQIGTWTVWAMGVVGGGTKITEAEAKRALLQLVVLDAGLWGATALSCTLVQPISRRLVNMSYVLMSSAYNVMVIALLLAVDRFASMAATSRLLFAVNRNQLAFFILANLLTGGVNLSMHTIYASPFVSWVVISSYTLVLLAMFVMLDRAFDVTLKFW 531
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO04G01850.1 ID=NO04G01850.1|Name=NO04G01850.1|organism=Nannochloropsis oceanica|type=mRNA|length=1563bp ATGCCTATGATGGACCCTACCGACTATAAGGCGGCCAAAGAAGCTTTCGT CTCCAACCTGAACGGCACGAGTCTCTACGAAATCACGTTAGTCACCCTCC CCCTCCCCCTCGCCCTTTGGGCCTACACCGAGCTTCGAGCCCTCCGCCTC ATCTACTCCAAACCCACCCCCGGCCTCCTCCTCGCCTTCTGTTACGAGTT CACCCTCCTTATTCTCCCCCAAGTCATCGCGCAGTGTCTTCCAAACGCAA CCCTCTGGGTGTTACTGGTCTTGTTTGTCATTGCGGTGGTTTGTCGGGCC ATCGTGCAGGCCTCGCGGGAACCGGCCTTGAAAAGCCAATGGCGGCACGA CCGAGCGGTCCGTCTCGTCTCTTCCCATGCCCGGAACTACCTGAGCAACT ACCGTGCCGGGGTTATGCTCACCTCCTCCATCGCCATCCTAGCCGTCGAT TTTACCATATTTCCCCGTCGCTTCGGGAAAACCGAGGCATTCGGCACAAG TTTAATGGATCTAGGTGTCGGCTGCTTCATCTTCTCCAGTGGCTTCTGCT CACGTGCTGCAAGACTGTTCCACCATCACAGCGAGGCCGCCCCTGGAGCA GCAGCAGCAGCAGGAGTAAGTGGTGTAGTCATAACAGACGATTTGTACCC ACAGGAAGGGAGGAAAGGAGGAGGGCATGGGGGGGTAAGCCCCCCAAATA GTAGTAGCCGTTTCTTCCGTTTCTCCAAAAGAGCGGCCATGTGGCGCACA AGCAAGCGCTGTCTTCCCCTTCTTCTGTTGGGCTTGGGTAGAATCCTAGC GAATCGCTATGTAGATTACCAGGAGCACGTGAGTGAGTACGGGAAACGCT GGAATTTTTTCTTGACTTTAGCAGTGATCCACTTGGCGGCTACTGCTTTG CACACCGTGTTCCCCCACAAAGCGTTATTCCCTCTGGCGATAATCGTGTT GGTCTTGTACCAGATGCAGTTGTCAGCGGGTGGGTTGACGGAGTATATAC TCGAGGCACCGAGGGAGGGAGGGTTCATGAGGGAGAACAGAGAGGGTGTG TGTGGTGTGATTGGGTTCTTGTGCCTGTATTTGATAGGCGAGCAGATAGG GACGTGGACTGTCTGGACTATGGGGGTTGTTGGGGGGGGAACGAAGACGA CTGAGGCGGAGGCCAGACGGGCGTTGTTGCATTTGGTGGTTTTGGATGCG GGGTTGTGGCTGGCGGCAGCTGCGACCAGTTCTGCCGTGCAGCCTATTTC GAGACGGTTGGTTAATATGAGCTATGTGATGTGGTCGGCAGCGTACAACG TGATGGTGGTGACTTTTTTATTTGCGGTGGATGAGTTTGCGTCTATGGCG GCGACATCACGGTTGCTTGGCGCGGTTAATCGGAATCAGTTGGCGTTTTT TATTTGTGCGAACTTGTTGACAGGAGCGATAAATTTGAGCATATACACGC TGTATGCAAGCCCTGTAGTGGCTTGGGGGGTGATTGGGACGTATGTGCTG GTGTTAATGCTGGCCTTTGTGTTGGTGGATCGGGCGTTTAATGTCACGCT GAAGTTTTGGTAG back to topprotein sequence of NO04G01850.1 >NO04G01850.1-protein ID=NO04G01850.1-protein|Name=NO04G01850.1|organism=Nannochloropsis oceanica|type=polypeptide|length=521bp MPMMDPTDYKAAKEAFVSNLNGTSLYEITLVTLPLPLALWAYTELRALRL IYSKPTPGLLLAFCYEFTLLILPQVIAQCLPNATLWVLLVLFVIAVVCRA IVQASREPALKSQWRHDRAVRLVSSHARNYLSNYRAGVMLTSSIAILAVD FTIFPRRFGKTEAFGTSLMDLGVGCFIFSSGFCSRAARLFHHHSEAAPGA AAAAGVSGVVITDDLYPQEGRKGGGHGGVSPPNSSSRFFRFSKRAAMWRT SKRCLPLLLLGLGRILANRYVDYQEHVSEYGKRWNFFLTLAVIHLAATAL HTVFPHKALFPLAIIVLVLYQMQLSAGGLTEYILEAPREGGFMRENREGV CGVIGFLCLYLIGEQIGTWTVWTMGVVGGGTKTTEAEARRALLHLVVLDA GLWLAAAATSSAVQPISRRLVNMSYVMWSAAYNVMVVTFLFAVDEFASMA ATSRLLGAVNRNQLAFFICANLLTGAINLSIYTLYASPVVAWGVIGTYVL VLMLAFVLVDRAFNVTLKFW* back to topmRNA from alignment at chr4:538252..539927- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO04G01850.1 ID=NO04G01850.1|Name=NO04G01850.1|organism=Nannochloropsis oceanica|type=mRNA|length=1676bp|location=Sequence derived from alignment at chr4:538252..539927- (Nannochloropsis oceanica) ATGCCTATGATGGACCCTACCGACTATAAGGCGGCCAAAGAAGCTTTCGT
CTCCAACCTGAACGGCACGAGTCTCTACGAAATCACGTTAGTCACCCTCC
CCCTCCCCCTCGCCCTTTGGGCCTACACCGAGCTTCGAGCCCTCCGCCTC
ATCTACTCCAAACCCACCCCCGGCCTCCTCCTCGCCTTCTGTTACGAGTT
CACCCTCCTTATTCTCCCCCAAGTCATCGCGCAGTGTCTTCCAAACGCAA
CCCTCTGGGTGTTACTGGTCTTGTTTGTCATTGCGGTGGTTTGTCGGGCC
ATCGTGCAGGCCTCGCGGGAACCGGCCTTGAAAAGCCAATGGCGGCACGA
CCGAGCGGGTAAGCTTATTCGTATTCATGATTAGACTCTCTACATTCAGT
TTCATTTGGCAACATTTTTGACCATGTACCTTCCACCCTCATCCACTTTC
CCCCTTCCCCAAAACCAATAGTCCGTCTCGTCTCTTCCCATGCCCGGAAC
TACCTGAGCAACTACCGTGCCGGGGTTATGCTCACCTCCTCCATCGCCAT
CCTAGCCGTCGATTTTACCATATTTCCCCGTCGCTTCGGGAAAACCGAGG
CATTCGGCACAAGTTTAATGGATCTAGGTGTCGGCTGCTTCATCTTCTCC
AGTGGCTTCTGCTCACGTGCTGCAAGACTGTTCCACCATCACAGCGAGGC
CGCCCCTGGAGCAGCAGCAGCAGCAGGAGTAAGTGGTGTAGTCATAACAG
ACGATTTGTACCCACAGGAAGGGAGGAAAGGAGGAGGGCATGGGGGGGTA
AGCCCCCCAAATAGTAGTAGCCGTTTCTTCCGTTTCTCCAAAAGAGCGGC
CATGTGGCGCACAAGCAAGCGCTGTCTTCCCCTTCTTCTGTTGGGCTTGG
GTAGAATCCTAGCGAATCGCTATGTAGATTACCAGGAGCACGTGAGTGAG
TACGGGAAACGCTGGAATTTTTTCTTGACTTTAGCAGTGATCCACTTGGC
GGCTACTGCTTTGCACACCGTGTTCCCCCACAAAGCGTTATTCCCTCTGG
CGATAATCGTGTTGGTCTTGTACCAGATGCAGTTGTCAGCGGGTGGGTTG
ACGGAGTATATACTCGAGGCACCGAGGGAGGGAGGGTTCATGAGGGAGAA
CAGAGAGGGTGTGTGTGGTGTGATTGGGTTCTTGTGCCTGTATTTGATAG
GCGAGCAGATAGGGACGTGGACTGTCTGGACTATGGGGGTTGTTGGGGGG
GGAACGAAGACGACTGAGGCGGAGGCCAGACGGGCGTTGTTGCATTTGGT
GGTTTTGGATGCGGGGTTGTGGCTGGCGGCAGCTGCGACCAGTTCTGCCG
TGCAGCCTATTTCGAGACGGTTGGTTAATATGAGCTATGTGATGTGGTCG
GCAGCGTACAACGTGATGGTGGTGACTTTTTTATTTGCGGTGGATGAGTT
TGCGTCTATGGCGGCGACATCACGGTTGCTTGGCGCGGTTAATCGGAATC
AGTTGGCGTTTTTTATTTGTGCGAACTTGTTGACAGGAGCGATAAATTTG
AGCATATACACGCTGTATGCAAGCCCTGTAGTGGCTTGGGGGGTGATTGG
GACGTATGTGCTGGTGTTAATGCTGGCCTTTGTGTTGGTGGATCGGGCGT
TTAATGTCACGCTGAAGTTTTGGTAG back to topCoding sequence (CDS) from alignment at chr4:538252..539927- >NO04G01850.1 ID=NO04G01850.1|Name=NO04G01850.1|organism=Nannochloropsis oceanica|type=CDS|length=1563bp|location=Sequence derived from alignment at chr4:538252..539927- (Nannochloropsis oceanica) ATGCCTATGATGGACCCTACCGACTATAAGGCGGCCAAAGAAGCTTTCGT CTCCAACCTGAACGGCACGAGTCTCTACGAAATCACGTTAGTCACCCTCC CCCTCCCCCTCGCCCTTTGGGCCTACACCGAGCTTCGAGCCCTCCGCCTC ATCTACTCCAAACCCACCCCCGGCCTCCTCCTCGCCTTCTGTTACGAGTT CACCCTCCTTATTCTCCCCCAAGTCATCGCGCAGTGTCTTCCAAACGCAA CCCTCTGGGTGTTACTGGTCTTGTTTGTCATTGCGGTGGTTTGTCGGGCC ATCGTGCAGGCCTCGCGGGAACCGGCCTTGAAAAGCCAATGGCGGCACGA CCGAGCGGTCCGTCTCGTCTCTTCCCATGCCCGGAACTACCTGAGCAACT ACCGTGCCGGGGTTATGCTCACCTCCTCCATCGCCATCCTAGCCGTCGAT TTTACCATATTTCCCCGTCGCTTCGGGAAAACCGAGGCATTCGGCACAAG TTTAATGGATCTAGGTGTCGGCTGCTTCATCTTCTCCAGTGGCTTCTGCT CACGTGCTGCAAGACTGTTCCACCATCACAGCGAGGCCGCCCCTGGAGCA GCAGCAGCAGCAGGAGTAAGTGGTGTAGTCATAACAGACGATTTGTACCC ACAGGAAGGGAGGAAAGGAGGAGGGCATGGGGGGGTAAGCCCCCCAAATA GTAGTAGCCGTTTCTTCCGTTTCTCCAAAAGAGCGGCCATGTGGCGCACA AGCAAGCGCTGTCTTCCCCTTCTTCTGTTGGGCTTGGGTAGAATCCTAGC GAATCGCTATGTAGATTACCAGGAGCACGTGAGTGAGTACGGGAAACGCT GGAATTTTTTCTTGACTTTAGCAGTGATCCACTTGGCGGCTACTGCTTTG CACACCGTGTTCCCCCACAAAGCGTTATTCCCTCTGGCGATAATCGTGTT GGTCTTGTACCAGATGCAGTTGTCAGCGGGTGGGTTGACGGAGTATATAC TCGAGGCACCGAGGGAGGGAGGGTTCATGAGGGAGAACAGAGAGGGTGTG TGTGGTGTGATTGGGTTCTTGTGCCTGTATTTGATAGGCGAGCAGATAGG GACGTGGACTGTCTGGACTATGGGGGTTGTTGGGGGGGGAACGAAGACGA CTGAGGCGGAGGCCAGACGGGCGTTGTTGCATTTGGTGGTTTTGGATGCG GGGTTGTGGCTGGCGGCAGCTGCGACCAGTTCTGCCGTGCAGCCTATTTC GAGACGGTTGGTTAATATGAGCTATGTGATGTGGTCGGCAGCGTACAACG TGATGGTGGTGACTTTTTTATTTGCGGTGGATGAGTTTGCGTCTATGGCG GCGACATCACGGTTGCTTGGCGCGGTTAATCGGAATCAGTTGGCGTTTTT TATTTGTGCGAACTTGTTGACAGGAGCGATAAATTTGAGCATATACACGC TGTATGCAAGCCCTGTAGTGGCTTGGGGGGTGATTGGGACGTATGTGCTG GTGTTAATGCTGGCCTTTGTGTTGGTGGATCGGGCGTTTAATGTCACGCT GAAGTTTTGGTAG back to top
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