NO04G01780.1, NO04G01780.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO04G01780.1
Unique NameNO04G01780.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1829
Alignment locationchr4:523584..525520 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:523584..525520 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO04G01780.1 vs.
Match: EWM28600.1 (hypothetical protein Naga_100009g62 [Nannochloropsis gaditana])

HSP 1 Score: 132.5 bits (332), Expect = 3.100e-27
Identity = 140/401 (34.91%), Postives = 200/401 (49.88%), Query Frame = 0 
Query:    8 AITSGGQPWYVWVLWAAVLLALCRRVWNICNQISMVCDLVNGGDTCPSS-----CWANSLCKKANDKSSAIWRWMELQEDALATGKASPLPACLSLLLRGLVHLSQGLEQVVFQKSGCRIITILAIVLTVYKEEIQAFIRPLGEWLVESLGGEEGGWRGGGGGWRGRELDDSEIPELEDLEVMAQEAATAAAFQRGTEQQVQKKKGQQRRKRKKRRQRFQTIEEEEGE----------GEREGEEEAEDGRRKTTRIRHGRSRLEGNVEEDEDACNEDGHQQQQQYAIRSKRQSQNKSYANDSSSSSSSSSSSSSSSRSSRYVNIPIVVASKRVPPAGWLVYDKVLGLVTYEELQEYQQRQQQQQQQEQG--QEIKGGGGKGKDNGNHGGIVADAAGRQQQ 392
            A  +G QPWYVW +WA  LL L RRVW  C++  MV  + + G TC +       +    C K +D   AIWRW+ELQEDALA G ASP  A L+L ++G++ LS  LE       G  + T+L + + + K+ I+A  RP   + +  LGG+E  W           + ++E+PELED  V+A EA     +QRG EQ    +K  QR  ++ R +  +  EEEE E          GER   +EA   RR  T    G S   G  +              +Q A R+   + +K  A+D ++ S  +              +P ++ASKRVPPAGWLVYD +LGLVTYEE  ++++ ++    +  G     KGGGG+G +        +  A R QQ
Sbjct:    4 AFVAGRQPWYVWAVWAGTLLLLSRRVWQACDRAVMVSGVEDEGSTCSTGSSFERAFPLRFCHKIHDSGYAIWRWIELQEDALALGTASPPRALLALGVQGVLGLSGALEGEGGWWIG--LATLLILTVCMQKDVIRALYRPWVAFFLACLGGKED-WVA---------VSEAELPELEDTAVIANEA-----WQRGREQ----RKPSQREGKEVRHRTIKEEEEEEEEVVVDEVRDVAGERGLGDEAV--RRMLTAPCGGSSSRYGGAKRGNT----------RQCACRTHWDT-SKPCASDCAACSEEADGV-----------LPPLLASKRVPPAGWLVYDPILGLVTYEESIKWREGRRSAGDRGGGGVGRTKGGGGRGNEGSPRTKPGSRRASRTQQ 359
The following BLAST results are available for this feature:
BLAST of NO04G01780.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28600.13.100e-2734.91hypothetical protein Naga_100009g62 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO04G01780NO04G01780Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO04G01780.1NO04G01780.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO04G01780.1.cds1NO04G01780.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G01780.1.cds2NO04G01780.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO04G01780.1 ID=NO04G01780.1|Name=NO04G01780.1|organism=Nannochloropsis oceanica|type=mRNA|length=1829bp
CGATGATGGTCTCTCAAGTCACGGAAGCATGACCGGAAAGGACTGCCTGC
TATGCTTAAGGTCAGCCCCTTGTCCCATTTGCGCTTTGTATGTATTTTTA
GGTCGTTCGAGTGTTCGTACATGAGCATCCGTTAGGCAGCAACATCTAGT
ATCACTCTCCACGCGTCGTCACCCCTCCCCTCCCATGAATCACAAGGGGC
CAACCAAGCCCACAATACTCCCGACGCGACAGGGAGGTCGCGCCCACCGC
AGGCGGATGCCACCTGCACTATACACGAGGAACTAGCGGTGAGGCTGTTC
TAATCTAGCTCAAGTAGCAGGACATCTATCTCTGCACCCTGCCTCGGCAC
CGTACCTGGCCCAATCCACAAATGATGATGAAGAAACTCCGCGCCATCAC
ATCGGGAGGGCAGCCCTGGTACGTTTGGGTCCTGTGGGCCGCGGTCCTCC
TCGCCCTTTGCCGTCGGGTCTGGAACATTTGCAACCAAATATCCATGGTG
TGCGACCTCGTGAATGGTGGGGATACTTGCCCATCTAGCTGCTGGGCAAA
TAGTCTTTGTAAGAAGGCCAACGACAAAAGCTCCGCCATATGGCGTTGGA
TGGAGCTGCAAGAAGACGCGCTCGCAACAGGCAAGGCCTCCCCCCTCCCC
GCCTGCCTCTCCCTCCTTCTTCGCGGCCTCGTTCATCTCTCCCAAGGCCT
GGAACAGGTGGTATTTCAGAAATCAGGATGCCGGATAATAACCATCTTAG
CCATTGTTTTGACAGTGTATAAAGAGGAGATCCAAGCTTTCATTCGTCCT
CTAGGAGAGTGGTTAGTAGAATCGCTAGGCGGGGAGGAAGGAGGGTGGAG
AGGAGGGGGAGGAGGGTGGAGAGGACGAGAGCTGGATGACTCAGAGATAC
CGGAGTTGGAAGACTTGGAGGTGATGGCACAGGAAGCAGCAACAGCAGCA
GCATTCCAGAGAGGGACGGAACAGCAGGTTCAGAAAAAGAAGGGGCAGCA
GAGGAGGAAGAGGAAGAAAAGAAGGCAGCGGTTTCAGACTATTGAGGAAG
AGGAGGGGGAGGGGGAGAGGGAGGGGGAGGAAGAGGCGGAGGATGGTAGA
AGAAAAACCACAAGAATACGACATGGGAGGAGTCGGCTGGAGGGTAATGT
GGAGGAAGACGAGGATGCTTGCAACGAGGATGGGCATCAGCAGCAGCAGC
AGTATGCGATCCGAAGCAAGAGGCAGAGTCAGAATAAAAGCTACGCAAAT
GACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAG
GAGTTCTAGGTATGTTAATATCCCTATAGTGGTGGCATCGAAAAGAGTGC
CGCCAGCTGGATGGCTGGTCTATGACAAGGTCCTGGGGTTGGTCACATAC
GAGGAACTCCAGGAGTACCAGCAGCGGCAGCAGCAGCAGCAGCAGCAGGA
GCAGGGTCAGGAAATTAAAGGAGGAGGAGGGAAAGGTAAGGATAACGGGA
ATCATGGCGGGATTGTCGCGGATGCGGCGGGAAGACAGCAGCAGATCAAT
GGAGGTGGAAACGGTCATTTGCAGGGCCCGGCCTTGAGGAGTAGTACGAA
AAAACAGCGACAAATGAGGCAGAAGCAGCAGCAGAGCTAATGTGGGGCGG
ATAATCCTAGTCCTCCGTCACTGTTGGCGTTGTTGTCCATGTCTGTGTGA
GCTCAGGGGGGGGAGAGGTGGCAAAGGAGAGACGTGCATGTTTTTTTAAA
ATGTGAATATGTACTTTACAGTCGAAAGGAACGAAATAATATCAAGCCCT
GTGCTCTTAAGAACCAATAGAGCACGCAG
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protein sequence of NO04G01780.1

>NO04G01780.1-protein ID=NO04G01780.1-protein|Name=NO04G01780.1|organism=Nannochloropsis oceanica|type=polypeptide|length=423bp
MMMKKLRAITSGGQPWYVWVLWAAVLLALCRRVWNICNQISMVCDLVNGG
DTCPSSCWANSLCKKANDKSSAIWRWMELQEDALATGKASPLPACLSLLL
RGLVHLSQGLEQVVFQKSGCRIITILAIVLTVYKEEIQAFIRPLGEWLVE
SLGGEEGGWRGGGGGWRGRELDDSEIPELEDLEVMAQEAATAAAFQRGTE
QQVQKKKGQQRRKRKKRRQRFQTIEEEEGEGEREGEEEAEDGRRKTTRIR
HGRSRLEGNVEEDEDACNEDGHQQQQQYAIRSKRQSQNKSYANDSSSSSS
SSSSSSSSSRSSRYVNIPIVVASKRVPPAGWLVYDKVLGLVTYEELQEYQ
QRQQQQQQQEQGQEIKGGGGKGKDNGNHGGIVADAAGRQQQINGGGNGHL
QGPALRSSTKKQRQMRQKQQQS*
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mRNA from alignment at chr4:523584..525520-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO04G01780.1 ID=NO04G01780.1|Name=NO04G01780.1|organism=Nannochloropsis oceanica|type=mRNA|length=1937bp|location=Sequence derived from alignment at chr4:523584..525520- (Nannochloropsis oceanica)
CGATGATGGTCTCTCAAGTCACGGAAGCATGACCGGAAAGGACTGCCTGC
TATGCTTAAGGTCAGCCCCTTGTCCCATTTGCGCTTTGTATGTATTTTTA
GGTCGTTCGAGTGTTCGTACATGAGCATCCGTTAGGCAGCAACATCTAGT
ATCACTCTCCACGCGTCGTCACCCCTCCCCTCCCATGAATCACAAGGGGC
CAACCAAGCCCACAATACTCCCGACGCGACAGGGAGGTCGCGCCCACCGC
AGGCGGATGCCACCTGCACTATACACGAGGAACTAGCGGTGAGGCTGTTC
TAATCTAGCTCAAGTAGCAGGACATCTATCTCTGCACCCTGCCTCGGCAC
CGTACCTGGCCCAATCCACAAATGATGATGAAGAAACTCCGCGCCATCAC
ATCGGGAGGGCAGCCCTGGTACGTTTGGGTCCTGTGGGCCGCGGTCCTCC
TCGCCCTTTGCCGTCGGGTCTGGAACATTTGCAACCAAATATCCATGGTG
TGCGACCTCGTGAATGGTGGGGATACTTGCCCATCTAGCTGCTGGGCAAA
TAGGTACGCGCATGGCAAGTCAGAAGAAGCAGGAAGGCAGACACGCTTGT
CCTCATTCATTCGTTCATTCATTCATGCCCCATACCTCTGATTCACGCAC
AACTCGAGCAGTCTTTGTAAGAAGGCCAACGACAAAAGCTCCGCCATATG
GCGTTGGATGGAGCTGCAAGAAGACGCGCTCGCAACAGGCAAGGCCTCCC
CCCTCCCCGCCTGCCTCTCCCTCCTTCTTCGCGGCCTCGTTCATCTCTCC
CAAGGCCTGGAACAGGTGGTATTTCAGAAATCAGGATGCCGGATAATAAC
CATCTTAGCCATTGTTTTGACAGTGTATAAAGAGGAGATCCAAGCTTTCA
TTCGTCCTCTAGGAGAGTGGTTAGTAGAATCGCTAGGCGGGGAGGAAGGA
GGGTGGAGAGGAGGGGGAGGAGGGTGGAGAGGACGAGAGCTGGATGACTC
AGAGATACCGGAGTTGGAAGACTTGGAGGTGATGGCACAGGAAGCAGCAA
CAGCAGCAGCATTCCAGAGAGGGACGGAACAGCAGGTTCAGAAAAAGAAG
GGGCAGCAGAGGAGGAAGAGGAAGAAAAGAAGGCAGCGGTTTCAGACTAT
TGAGGAAGAGGAGGGGGAGGGGGAGAGGGAGGGGGAGGAAGAGGCGGAGG
ATGGTAGAAGAAAAACCACAAGAATACGACATGGGAGGAGTCGGCTGGAG
GGTAATGTGGAGGAAGACGAGGATGCTTGCAACGAGGATGGGCATCAGCA
GCAGCAGCAGTATGCGATCCGAAGCAAGAGGCAGAGTCAGAATAAAAGCT
ACGCAAATGACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGC
AGCAGCAGGAGTTCTAGGTATGTTAATATCCCTATAGTGGTGGCATCGAA
AAGAGTGCCGCCAGCTGGATGGCTGGTCTATGACAAGGTCCTGGGGTTGG
TCACATACGAGGAACTCCAGGAGTACCAGCAGCGGCAGCAGCAGCAGCAG
CAGCAGGAGCAGGGTCAGGAAATTAAAGGAGGAGGAGGGAAAGGTAAGGA
TAACGGGAATCATGGCGGGATTGTCGCGGATGCGGCGGGAAGACAGCAGC
AGATCAATGGAGGTGGAAACGGTCATTTGCAGGGCCCGGCCTTGAGGAGT
AGTACGAAAAAACAGCGACAAATGAGGCAGAAGCAGCAGCAGAGCTAATG
TGGGGCGGATAATCCTAGTCCTCCGTCACTGTTGGCGTTGTTGTCCATGT
CTGTGTGAGCTCAGGGGGGGGAGAGGTGGCAAAGGAGAGACGTGCATGTT
TTTTTAAAATGTGAATATGTACTTTACAGTCGAAAGGAACGAAATAATAT
CAAGCCCTGTGCTCTTAAGAACCAATAGAGCACGCAG
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Coding sequence (CDS) from alignment at chr4:523584..525520-

>NO04G01780.1 ID=NO04G01780.1|Name=NO04G01780.1|organism=Nannochloropsis oceanica|type=CDS|length=1269bp|location=Sequence derived from alignment at chr4:523584..525520- (Nannochloropsis oceanica)
ATGATGATGAAGAAACTCCGCGCCATCACATCGGGAGGGCAGCCCTGGTA
CGTTTGGGTCCTGTGGGCCGCGGTCCTCCTCGCCCTTTGCCGTCGGGTCT
GGAACATTTGCAACCAAATATCCATGGTGTGCGACCTCGTGAATGGTGGG
GATACTTGCCCATCTAGCTGCTGGGCAAATAGTCTTTGTAAGAAGGCCAA
CGACAAAAGCTCCGCCATATGGCGTTGGATGGAGCTGCAAGAAGACGCGC
TCGCAACAGGCAAGGCCTCCCCCCTCCCCGCCTGCCTCTCCCTCCTTCTT
CGCGGCCTCGTTCATCTCTCCCAAGGCCTGGAACAGGTGGTATTTCAGAA
ATCAGGATGCCGGATAATAACCATCTTAGCCATTGTTTTGACAGTGTATA
AAGAGGAGATCCAAGCTTTCATTCGTCCTCTAGGAGAGTGGTTAGTAGAA
TCGCTAGGCGGGGAGGAAGGAGGGTGGAGAGGAGGGGGAGGAGGGTGGAG
AGGACGAGAGCTGGATGACTCAGAGATACCGGAGTTGGAAGACTTGGAGG
TGATGGCACAGGAAGCAGCAACAGCAGCAGCATTCCAGAGAGGGACGGAA
CAGCAGGTTCAGAAAAAGAAGGGGCAGCAGAGGAGGAAGAGGAAGAAAAG
AAGGCAGCGGTTTCAGACTATTGAGGAAGAGGAGGGGGAGGGGGAGAGGG
AGGGGGAGGAAGAGGCGGAGGATGGTAGAAGAAAAACCACAAGAATACGA
CATGGGAGGAGTCGGCTGGAGGGTAATGTGGAGGAAGACGAGGATGCTTG
CAACGAGGATGGGCATCAGCAGCAGCAGCAGTATGCGATCCGAAGCAAGA
GGCAGAGTCAGAATAAAAGCTACGCAAATGACAGCAGCAGCAGCAGCAGC
AGCAGCAGCAGCAGCAGCAGCAGCAGCAGGAGTTCTAGGTATGTTAATAT
CCCTATAGTGGTGGCATCGAAAAGAGTGCCGCCAGCTGGATGGCTGGTCT
ATGACAAGGTCCTGGGGTTGGTCACATACGAGGAACTCCAGGAGTACCAG
CAGCGGCAGCAGCAGCAGCAGCAGCAGGAGCAGGGTCAGGAAATTAAAGG
AGGAGGAGGGAAAGGTAAGGATAACGGGAATCATGGCGGGATTGTCGCGG
ATGCGGCGGGAAGACAGCAGCAGATCAATGGAGGTGGAAACGGTCATTTG
CAGGGCCCGGCCTTGAGGAGTAGTACGAAAAAACAGCGACAAATGAGGCA
GAAGCAGCAGCAGAGCTAA
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Synonyms
Publications