NO04G01740.1, NO04G01740.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO04G01740.1
Unique NameNO04G01740.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1768
Alignment locationchr4:513829..515596 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:513829..515596 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO04G01740.1 vs.
Match: EWM28578.1 (rna recognition motif-containing protein [Nannochloropsis gaditana])

HSP 1 Score: 106.7 bits (265), Expect = 2.300e-19
Identity = 246/603 (40.80%), Postives = 279/603 (46.27%), Query Frame = 0 
Query:    1 MPPTPGMVLLPAQQLFQQQQQLLQQQQLLLQGQQ--APYSF-----LPGGGGEGGREGGRVGYENDRKRGRDRERGEGRGGGDGWEGGDWEVGPNKRRSFRGEGKYGPAGGMGAGGYSEDDGRRNGEGGRGGETPYRSRGRSRSPPSRE--RRGG-------SSRGGGGYVG-----GSRRSPERDLSRYGRGGGGGGGGGGGGGRY--RRDDDFH-PPRGPAPPQLLPAV--YVPQQQQQLLPQSTMAFGPPIVSYPHHHHHQQQQQQQQQQQPPPPQRPPPPSWVPQGQTYPAPAMAPAPAYLPAPPPPQ-------QQQQREPV--YQQQQGYL----QQQQPQQMLQQQPPP-------PSPFPHQQQTV---QSAQVPRPMSMGAKKLLPPGAK--------QLQPPQQPQQLQQQHQPPPPQQQQ----QQQQQPPQPLPPYYAVSVGQPYLPPQNGHHQQQQQQQQQQQQPQYYSQQPQQAPMPPPGYAHPQHAYAPPPQQPQQHHQQQHPLPAYEDGATDGGGGAGGGDGGGGGRGGGGGNRDRPRGRPRGGRGRDKRDSERGTRGGGGRSGDQPPPQRGEKPYDFLKHQQWRGE 543
            MPP P M+++PA     Q    L        G     P +F         GGEGGRE G          GR R R        G EGG WE G +KR       KYGP GG   G    D GR +G          RS  +SRSPP R+  R GG       SS G   + G     G  R  ER      R GGG  GG   G  Y  R + +++   R   PP L P V    PQQQ   LP ST+A+G P+VSYP  HH        Q QQPP P   P P+W P  Q YP  AM P PAY   PPP Q       QQ    P+  Y  Q GY     QQQ PQQ  QQQ  P       PSPFP QQ  +   QS+   R M  GAKKLLPPGA+           P  Q  Q QQ+H+ P  +QQQ     Q QQP    PP      GQ Y PPQNG  QQQQQQ Q  QQP YY   PQQ   PP GYA+P  +  P  QQ QQ  QQQ      +             +GGGG        R+R RGRPR GRGRD     R +RGGG    DQPPPQRG+KPY FL  Q+ RG+
Sbjct:  570 MPPPPPMMMMPAPPPPSQPYPPLPPTPYARPGAMPSGPLTFQGQLGYVREGGEGGREYGG---------GRKRLRSGSEEWEGGREGGAWERGGSKRWRSEARSKYGPGGGREGG---RDGGREDGR--------RRSGVQSRSPPGRQGWREGGSYDEDRFSSEGDYPHRGLDEGRGVGRREERSRGGDRRRGGGEAGGDVSGPMYYDRGEGEWNGVGRSRGPPPLPPPVAPLPPQQQPPPLP-STLAYGTPVVSYPQQHH------ATQHQQPPLPAHAPQPAWGPAQQAYPPTAM-PPPAY---PPPQQGPPLHHLQQPPSAPISQYGPQAGYAAPASQQQYPQQQQQQQQQPPSEQMPNPSPFPPQQPHISGAQSSATSRLMPPGAKKLLPPGARVGPSGKTAARMPGDQSPQPQQEHRVPEHRQQQSHHHSQAQQPYYMNPP----PTGQGY-PPQNG-FQQQQQQLQPPQQP-YYPPPPQQ---PPAGYAYPP-SNMPQQQQQQQQQQQQQQQQQQQQPYLPQAPPQSTPEGGGG--------RERNRGRPRSGRGRD-----RSSRGGG---TDQPPPQRGDKPYAFL--QKRRGD 1112
The following BLAST results are available for this feature:
BLAST of NO04G01740.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28578.12.300e-1940.80rna recognition motif-containing protein [Nannochl... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO04G01740NO04G01740Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO04G01740.1NO04G01740.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO04G01740.1.cds1NO04G01740.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO04G01740.1 ID=NO04G01740.1|Name=NO04G01740.1|organism=Nannochloropsis oceanica|type=mRNA|length=1768bp
ATGCCACCTACTCCTGGCATGGTGCTGTTGCCGGCCCAGCAGCTTTTTCA
ACAGCAGCAGCAGTTACTGCAGCAGCAGCAACTCTTACTGCAAGGGCAGC
AGGCCCCGTATTCCTTCCTGCCGGGAGGAGGCGGGGAGGGAGGAAGGGAG
GGAGGAAGGGTAGGATATGAGAACGACAGGAAGAGAGGAAGAGATCGCGA
GCGAGGAGAAGGACGAGGAGGAGGGGATGGGTGGGAGGGAGGAGATTGGG
AAGTGGGGCCGAACAAGCGAAGATCGTTTCGAGGGGAGGGCAAATATGGG
CCTGCTGGAGGGATGGGGGCTGGTGGGTACAGTGAGGATGACGGACGAAG
GAATGGAGAAGGAGGGAGGGGGGGAGAAACGCCCTATCGGAGTAGGGGGA
GGAGTCGCTCCCCTCCTTCGCGGGAGCGGAGGGGAGGAAGTTCAAGGGGG
GGGGGCGGATATGTCGGGGGGTCGCGGAGATCGCCAGAGAGGGATTTAAG
TCGGTACGGCCGTGGAGGAGGAGGAGGAGGGGGAGGAGGGGGAGGAGGAG
GGAGGTATAGGCGTGATGACGACTTTCATCCTCCCCGTGGACCCGCCCCT
CCGCAGCTTTTGCCGGCCGTTTATGTCCCGCAGCAACAGCAGCAGCTGCT
GCCGCAATCCACCATGGCGTTTGGTCCTCCCATCGTGTCTTACCCCCACC
ACCACCACCACCAGCAGCAGCAGCAGCAACAGCAGCAGCAGCAGCCGCCG
CCGCCTCAACGCCCACCTCCTCCATCGTGGGTGCCTCAAGGACAAACATA
TCCCGCACCCGCCATGGCACCTGCACCTGCTTATCTCCCAGCTCCTCCCC
CTCCTCAGCAGCAGCAGCAGCGAGAACCCGTCTATCAACAGCAGCAAGGC
TACCTGCAGCAGCAGCAGCCGCAGCAAATGCTCCAGCAGCAGCCACCCCC
TCCCTCTCCCTTCCCACATCAGCAGCAGACCGTCCAATCTGCGCAGGTCC
CTCGGCCCATGTCTATGGGGGCCAAAAAGCTCTTACCACCAGGCGCCAAG
CAGCTGCAGCCCCCCCAACAGCCGCAGCAGCTGCAACAGCAGCATCAGCC
GCCTCCTCCCCAGCAGCAGCAGCAGCAGCAGCAGCAGCCGCCACAGCCAC
TACCTCCTTATTATGCAGTTTCTGTAGGGCAACCGTACCTCCCACCTCAG
AATGGACACCATCAACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACC
GCAGTACTATTCGCAGCAGCCGCAGCAGGCACCTATGCCGCCACCTGGTT
ACGCCCATCCCCAGCATGCTTACGCTCCTCCTCCCCAGCAGCCGCAGCAG
CACCACCAACAGCAGCATCCCTTGCCCGCGTATGAAGATGGAGCTACTGA
TGGTGGTGGTGGTGCTGGTGGAGGAGATGGGGGAGGAGGAGGAAGAGGGG
GAGGAGGAGGGAATAGAGACCGACCCAGGGGACGCCCTCGCGGTGGCCGT
GGACGTGATAAAAGGGATTCTGAGCGTGGTACTCGAGGAGGAGGAGGACG
GAGCGGAGACCAACCCCCTCCGCAGCGGGGCGAAAAGCCGTATGATTTTC
TGAAGCACCAGCAGTGGCGGGGGGAGTGAGGGAAGAGGGAGGGAGGGAAG
CGAGGAGTAGGAAAGCCGTTAGTAAGGGTGAATTTTAATGTTTGACATCG
CGATTTCGATGCACAGGAAAAAGAAAGACGGGAAGTCTCCTTTTGAGAAA
TAGATAATTTCTCCTGAA
back to top

protein sequence of NO04G01740.1

>NO04G01740.1-protein ID=NO04G01740.1-protein|Name=NO04G01740.1|organism=Nannochloropsis oceanica|type=polypeptide|length=543bp
MPPTPGMVLLPAQQLFQQQQQLLQQQQLLLQGQQAPYSFLPGGGGEGGRE
GGRVGYENDRKRGRDRERGEGRGGGDGWEGGDWEVGPNKRRSFRGEGKYG
PAGGMGAGGYSEDDGRRNGEGGRGGETPYRSRGRSRSPPSRERRGGSSRG
GGGYVGGSRRSPERDLSRYGRGGGGGGGGGGGGGRYRRDDDFHPPRGPAP
PQLLPAVYVPQQQQQLLPQSTMAFGPPIVSYPHHHHHQQQQQQQQQQQPP
PPQRPPPPSWVPQGQTYPAPAMAPAPAYLPAPPPPQQQQQREPVYQQQQG
YLQQQQPQQMLQQQPPPPSPFPHQQQTVQSAQVPRPMSMGAKKLLPPGAK
QLQPPQQPQQLQQQHQPPPPQQQQQQQQQPPQPLPPYYAVSVGQPYLPPQ
NGHHQQQQQQQQQQQQPQYYSQQPQQAPMPPPGYAHPQHAYAPPPQQPQQ
HHQQQHPLPAYEDGATDGGGGAGGGDGGGGGRGGGGGNRDRPRGRPRGGR
GRDKRDSERGTRGGGGRSGDQPPPQRGEKPYDFLKHQQWRGE*
back to top

mRNA from alignment at chr4:513829..515596+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO04G01740.1 ID=NO04G01740.1|Name=NO04G01740.1|organism=Nannochloropsis oceanica|type=mRNA|length=1768bp|location=Sequence derived from alignment at chr4:513829..515596+ (Nannochloropsis oceanica)
ATGCCACCTACTCCTGGCATGGTGCTGTTGCCGGCCCAGCAGCTTTTTCA
ACAGCAGCAGCAGTTACTGCAGCAGCAGCAACTCTTACTGCAAGGGCAGC
AGGCCCCGTATTCCTTCCTGCCGGGAGGAGGCGGGGAGGGAGGAAGGGAG
GGAGGAAGGGTAGGATATGAGAACGACAGGAAGAGAGGAAGAGATCGCGA
GCGAGGAGAAGGACGAGGAGGAGGGGATGGGTGGGAGGGAGGAGATTGGG
AAGTGGGGCCGAACAAGCGAAGATCGTTTCGAGGGGAGGGCAAATATGGG
CCTGCTGGAGGGATGGGGGCTGGTGGGTACAGTGAGGATGACGGACGAAG
GAATGGAGAAGGAGGGAGGGGGGGAGAAACGCCCTATCGGAGTAGGGGGA
GGAGTCGCTCCCCTCCTTCGCGGGAGCGGAGGGGAGGAAGTTCAAGGGGG
GGGGGCGGATATGTCGGGGGGTCGCGGAGATCGCCAGAGAGGGATTTAAG
TCGGTACGGCCGTGGAGGAGGAGGAGGAGGGGGAGGAGGGGGAGGAGGAG
GGAGGTATAGGCGTGATGACGACTTTCATCCTCCCCGTGGACCCGCCCCT
CCGCAGCTTTTGCCGGCCGTTTATGTCCCGCAGCAACAGCAGCAGCTGCT
GCCGCAATCCACCATGGCGTTTGGTCCTCCCATCGTGTCTTACCCCCACC
ACCACCACCACCAGCAGCAGCAGCAGCAACAGCAGCAGCAGCAGCCGCCG
CCGCCTCAACGCCCACCTCCTCCATCGTGGGTGCCTCAAGGACAAACATA
TCCCGCACCCGCCATGGCACCTGCACCTGCTTATCTCCCAGCTCCTCCCC
CTCCTCAGCAGCAGCAGCAGCGAGAACCCGTCTATCAACAGCAGCAAGGC
TACCTGCAGCAGCAGCAGCCGCAGCAAATGCTCCAGCAGCAGCCACCCCC
TCCCTCTCCCTTCCCACATCAGCAGCAGACCGTCCAATCTGCGCAGGTCC
CTCGGCCCATGTCTATGGGGGCCAAAAAGCTCTTACCACCAGGCGCCAAG
CAGCTGCAGCCCCCCCAACAGCCGCAGCAGCTGCAACAGCAGCATCAGCC
GCCTCCTCCCCAGCAGCAGCAGCAGCAGCAGCAGCAGCCGCCACAGCCAC
TACCTCCTTATTATGCAGTTTCTGTAGGGCAACCGTACCTCCCACCTCAG
AATGGACACCATCAACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACC
GCAGTACTATTCGCAGCAGCCGCAGCAGGCACCTATGCCGCCACCTGGTT
ACGCCCATCCCCAGCATGCTTACGCTCCTCCTCCCCAGCAGCCGCAGCAG
CACCACCAACAGCAGCATCCCTTGCCCGCGTATGAAGATGGAGCTACTGA
TGGTGGTGGTGGTGCTGGTGGAGGAGATGGGGGAGGAGGAGGAAGAGGGG
GAGGAGGAGGGAATAGAGACCGACCCAGGGGACGCCCTCGCGGTGGCCGT
GGACGTGATAAAAGGGATTCTGAGCGTGGTACTCGAGGAGGAGGAGGACG
GAGCGGAGACCAACCCCCTCCGCAGCGGGGCGAAAAGCCGTATGATTTTC
TGAAGCACCAGCAGTGGCGGGGGGAGTGAGGGAAGAGGGAGGGAGGGAAG
CGAGGAGTAGGAAAGCCGTTAGTAAGGGTGAATTTTAATGTTTGACATCG
CGATTTCGATGCACAGGAAAAAGAAAGACGGGAAGTCTCCTTTTGAGAAA
TAGATAATTTCTCCTGAA
back to top

Coding sequence (CDS) from alignment at chr4:513829..515596+

>NO04G01740.1 ID=NO04G01740.1|Name=NO04G01740.1|organism=Nannochloropsis oceanica|type=CDS|length=1629bp|location=Sequence derived from alignment at chr4:513829..515596+ (Nannochloropsis oceanica)
ATGCCACCTACTCCTGGCATGGTGCTGTTGCCGGCCCAGCAGCTTTTTCA
ACAGCAGCAGCAGTTACTGCAGCAGCAGCAACTCTTACTGCAAGGGCAGC
AGGCCCCGTATTCCTTCCTGCCGGGAGGAGGCGGGGAGGGAGGAAGGGAG
GGAGGAAGGGTAGGATATGAGAACGACAGGAAGAGAGGAAGAGATCGCGA
GCGAGGAGAAGGACGAGGAGGAGGGGATGGGTGGGAGGGAGGAGATTGGG
AAGTGGGGCCGAACAAGCGAAGATCGTTTCGAGGGGAGGGCAAATATGGG
CCTGCTGGAGGGATGGGGGCTGGTGGGTACAGTGAGGATGACGGACGAAG
GAATGGAGAAGGAGGGAGGGGGGGAGAAACGCCCTATCGGAGTAGGGGGA
GGAGTCGCTCCCCTCCTTCGCGGGAGCGGAGGGGAGGAAGTTCAAGGGGG
GGGGGCGGATATGTCGGGGGGTCGCGGAGATCGCCAGAGAGGGATTTAAG
TCGGTACGGCCGTGGAGGAGGAGGAGGAGGGGGAGGAGGGGGAGGAGGAG
GGAGGTATAGGCGTGATGACGACTTTCATCCTCCCCGTGGACCCGCCCCT
CCGCAGCTTTTGCCGGCCGTTTATGTCCCGCAGCAACAGCAGCAGCTGCT
GCCGCAATCCACCATGGCGTTTGGTCCTCCCATCGTGTCTTACCCCCACC
ACCACCACCACCAGCAGCAGCAGCAGCAACAGCAGCAGCAGCAGCCGCCG
CCGCCTCAACGCCCACCTCCTCCATCGTGGGTGCCTCAAGGACAAACATA
TCCCGCACCCGCCATGGCACCTGCACCTGCTTATCTCCCAGCTCCTCCCC
CTCCTCAGCAGCAGCAGCAGCGAGAACCCGTCTATCAACAGCAGCAAGGC
TACCTGCAGCAGCAGCAGCCGCAGCAAATGCTCCAGCAGCAGCCACCCCC
TCCCTCTCCCTTCCCACATCAGCAGCAGACCGTCCAATCTGCGCAGGTCC
CTCGGCCCATGTCTATGGGGGCCAAAAAGCTCTTACCACCAGGCGCCAAG
CAGCTGCAGCCCCCCCAACAGCCGCAGCAGCTGCAACAGCAGCATCAGCC
GCCTCCTCCCCAGCAGCAGCAGCAGCAGCAGCAGCAGCCGCCACAGCCAC
TACCTCCTTATTATGCAGTTTCTGTAGGGCAACCGTACCTCCCACCTCAG
AATGGACACCATCAACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACC
GCAGTACTATTCGCAGCAGCCGCAGCAGGCACCTATGCCGCCACCTGGTT
ACGCCCATCCCCAGCATGCTTACGCTCCTCCTCCCCAGCAGCCGCAGCAG
CACCACCAACAGCAGCATCCCTTGCCCGCGTATGAAGATGGAGCTACTGA
TGGTGGTGGTGGTGCTGGTGGAGGAGATGGGGGAGGAGGAGGAAGAGGGG
GAGGAGGAGGGAATAGAGACCGACCCAGGGGACGCCCTCGCGGTGGCCGT
GGACGTGATAAAAGGGATTCTGAGCGTGGTACTCGAGGAGGAGGAGGACG
GAGCGGAGACCAACCCCCTCCGCAGCGGGGCGAAAAGCCGTATGATTTTC
TGAAGCACCAGCAGTGGCGGGGGGAGTGA
back to top
Synonyms
Publications