NO04G01720.1, NO04G01720.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO04G01720.1
Unique NameNO04G01720.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1380
Alignment locationchr4:511638..513017 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:511638..513017 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO04G01720.1 vs.
Match: EWM28578.1 (rna recognition motif-containing protein [Nannochloropsis gaditana])

HSP 1 Score: 207.2 bits (526), Expect = 8.100e-50
Identity = 156/333 (46.85%), Postives = 206/333 (61.86%), Query Frame = 0 
Query:    1 MEEGAVVEEPPKPAAVQEEGEEEEGKQAVAAGNEEGEGEEGVVPDATAPAEGVKEANVDGTNGGGDVAGISAMEEEGEVLEDDGREE--GEEIETQQAAAATPTTATLIPSPRSALMAPSS--SSSASVQQEQVEEGHEVFVGGVKQGVTEGELRKVFEKCGEVIGVRLMKDRRSRQLKGYAFVRFKTSEEAGRAQEELTGYVLNGKALEVNSCEANKRLKVSNLDRKWTPEIFKNLMEKALLPFPGVVLLELKEAEAGGKEEEKWKGKKGGRVGKYEDEWKENVKEKERGRGQKNAMKVEEEEQEEGEVEEGEVGEEEGVVVKGEGEGGRTG 330
            MEEG  VEEPP PAAV+EEGE++       A +E G   +G         + VK+   + +    D A  ++MEEEGEVL++   EE  G   E Q+        A  +     A    SS  +SS  V+QE+VEEG EVFVGG+ QGV E ELR+VF KCGEV+GVRLMKDRRS+Q+KGYAFVR+++ +EA +A EELTG  ++G+ALEV SCE NKRLKVSNLDR+WTPE F++LME AL  + G+VL+EL+E     ++ EK KG+K G     E+E +E   E E G   ++  +  EE+  EG   EG  GE E      +G+G + G
Sbjct:    1 MEEGTFVEEPPPPAAVKEEGEDD-----AVASDEGGFNVQGKDVGMLDHGKSVKDKRTETS----DEAARASMEEEGEVLDEGEEEEPSGPASEQQKPDTGPQDAAEGLEGGEGAPPKGSSDKASSVPVRQEEVEEGIEVFVGGLHQGVREAELRQVFGKCGEVLGVRLMKDRRSKQMKGYAFVRYRSPQEARKAAEELTGCEVHGRALEVRSCEENKRLKVSNLDRRWTPEKFRDLMESALAAYSGIVLVELQEKSEVKEKGEKGKGEKEGE----EEEVEEGELEVEEGEVSESPKRGPEEKSTEG---EGGAGERE---ASADGQGAKEG 314
The following BLAST results are available for this feature:
BLAST of NO04G01720.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28578.18.100e-5046.85rna recognition motif-containing protein [Nannochl... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO04G01720NO04G01720Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO04G01720.1NO04G01720.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO04G01720.1.cds1NO04G01720.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO04G01720.1 ID=NO04G01720.1|Name=NO04G01720.1|organism=Nannochloropsis oceanica|type=mRNA|length=1380bp
ATCGCATTCGCTTCATCACCATCATGCCCGTGGGGGTGGATTGTACGACA
TGCCTGCTGTTGTTCCCGCGTGTTGAAACCACACACAGATATGCACAGCG
CACAAAGATGGACAGGATGCATAAATGCTTGTCCAAGTGATCCATCGCTT
ACATTGCTTCACTATCCCCGAAAACCGTAGTTTTGTGTTGTACAGCGAGA
AGCAATTTGAACGTCCTCAAGCAACAGCACGACACACACGCACAGCACGC
CCTAAGTGGCAGCAGCAGCAGCAACGGTAACAAAAGCATCAGGTTTACTT
TCAGAGCTGACAGAGGAACTCGTAGCAGCAGCAAGCATGGAGGAAGGTGC
GGTCGTGGAGGAGCCACCCAAGCCGGCGGCTGTCCAGGAGGAGGGAGAAG
AGGAGGAGGGGAAGCAAGCGGTTGCTGCTGGCAACGAGGAGGGCGAGGGA
GAGGAAGGGGTTGTCCCTGACGCCACCGCACCGGCTGAAGGTGTGAAGGA
AGCGAATGTAGACGGTACAAATGGCGGCGGCGATGTTGCAGGGATCTCCG
CCATGGAAGAGGAAGGAGAAGTGCTGGAGGACGACGGAAGAGAAGAAGGA
GAGGAGATTGAGACGCAGCAGGCAGCAGCAGCAACGCCCACAACAGCCAC
ACTAATTCCATCCCCGAGATCAGCATTAATGGCCCCATCTTCATCCTCCT
CAGCTTCCGTACAGCAGGAACAAGTGGAGGAGGGGCACGAAGTCTTTGTT
GGGGGGGTGAAGCAAGGTGTAACGGAAGGAGAGCTCCGCAAGGTTTTTGA
AAAATGCGGGGAGGTGATAGGGGTGCGCTTGATGAAAGACCGTCGTTCTA
GGCAATTGAAAGGCTATGCCTTTGTGCGTTTCAAGACGAGTGAGGAGGCG
GGAAGAGCGCAGGAGGAATTGACCGGATATGTGTTGAACGGGAAGGCCTT
GGAGGTGAACTCGTGCGAGGCAAATAAGAGGCTCAAGGTGAGCAATCTGG
ACAGGAAGTGGACGCCAGAAATATTTAAGAATTTGATGGAAAAGGCCTTG
CTGCCGTTTCCGGGGGTGGTGTTGCTGGAGCTGAAGGAAGCAGAGGCGGG
AGGGAAGGAGGAAGAGAAGTGGAAGGGAAAGAAGGGTGGGAGGGTTGGCA
AATATGAGGACGAATGGAAAGAGAATGTGAAAGAGAAGGAGAGGGGAAGA
GGGCAGAAAAATGCTATGAAAGTGGAGGAGGAGGAGCAGGAGGAGGGAGA
GGTGGAGGAGGGGGAGGTGGGGGAGGAGGAGGGCGTCGTCGTTAAGGGAG
AAGGGGAGGGGGGGAGGACGGGAGGGAGGAGACAGCGCCCGAACATGTCG
CCACCGAGATTGAGCAGCAGCTTATTGTAG
back to top

protein sequence of NO04G01720.1

>NO04G01720.1-protein ID=NO04G01720.1-protein|Name=NO04G01720.1|organism=Nannochloropsis oceanica|type=polypeptide|length=348bp
MEEGAVVEEPPKPAAVQEEGEEEEGKQAVAAGNEEGEGEEGVVPDATAPA
EGVKEANVDGTNGGGDVAGISAMEEEGEVLEDDGREEGEEIETQQAAAAT
PTTATLIPSPRSALMAPSSSSSASVQQEQVEEGHEVFVGGVKQGVTEGEL
RKVFEKCGEVIGVRLMKDRRSRQLKGYAFVRFKTSEEAGRAQEELTGYVL
NGKALEVNSCEANKRLKVSNLDRKWTPEIFKNLMEKALLPFPGVVLLELK
EAEAGGKEEEKWKGKKGGRVGKYEDEWKENVKEKERGRGQKNAMKVEEEE
QEEGEVEEGEVGEEEGVVVKGEGEGGRTGGRRQRPNMSPPRLSSSLL*
back to top

mRNA from alignment at chr4:511638..513017+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO04G01720.1 ID=NO04G01720.1|Name=NO04G01720.1|organism=Nannochloropsis oceanica|type=mRNA|length=1380bp|location=Sequence derived from alignment at chr4:511638..513017+ (Nannochloropsis oceanica)
ATCGCATTCGCTTCATCACCATCATGCCCGTGGGGGTGGATTGTACGACA
TGCCTGCTGTTGTTCCCGCGTGTTGAAACCACACACAGATATGCACAGCG
CACAAAGATGGACAGGATGCATAAATGCTTGTCCAAGTGATCCATCGCTT
ACATTGCTTCACTATCCCCGAAAACCGTAGTTTTGTGTTGTACAGCGAGA
AGCAATTTGAACGTCCTCAAGCAACAGCACGACACACACGCACAGCACGC
CCTAAGTGGCAGCAGCAGCAGCAACGGTAACAAAAGCATCAGGTTTACTT
TCAGAGCTGACAGAGGAACTCGTAGCAGCAGCAAGCATGGAGGAAGGTGC
GGTCGTGGAGGAGCCACCCAAGCCGGCGGCTGTCCAGGAGGAGGGAGAAG
AGGAGGAGGGGAAGCAAGCGGTTGCTGCTGGCAACGAGGAGGGCGAGGGA
GAGGAAGGGGTTGTCCCTGACGCCACCGCACCGGCTGAAGGTGTGAAGGA
AGCGAATGTAGACGGTACAAATGGCGGCGGCGATGTTGCAGGGATCTCCG
CCATGGAAGAGGAAGGAGAAGTGCTGGAGGACGACGGAAGAGAAGAAGGA
GAGGAGATTGAGACGCAGCAGGCAGCAGCAGCAACGCCCACAACAGCCAC
ACTAATTCCATCCCCGAGATCAGCATTAATGGCCCCATCTTCATCCTCCT
CAGCTTCCGTACAGCAGGAACAAGTGGAGGAGGGGCACGAAGTCTTTGTT
GGGGGGGTGAAGCAAGGTGTAACGGAAGGAGAGCTCCGCAAGGTTTTTGA
AAAATGCGGGGAGGTGATAGGGGTGCGCTTGATGAAAGACCGTCGTTCTA
GGCAATTGAAAGGCTATGCCTTTGTGCGTTTCAAGACGAGTGAGGAGGCG
GGAAGAGCGCAGGAGGAATTGACCGGATATGTGTTGAACGGGAAGGCCTT
GGAGGTGAACTCGTGCGAGGCAAATAAGAGGCTCAAGGTGAGCAATCTGG
ACAGGAAGTGGACGCCAGAAATATTTAAGAATTTGATGGAAAAGGCCTTG
CTGCCGTTTCCGGGGGTGGTGTTGCTGGAGCTGAAGGAAGCAGAGGCGGG
AGGGAAGGAGGAAGAGAAGTGGAAGGGAAAGAAGGGTGGGAGGGTTGGCA
AATATGAGGACGAATGGAAAGAGAATGTGAAAGAGAAGGAGAGGGGAAGA
GGGCAGAAAAATGCTATGAAAGTGGAGGAGGAGGAGCAGGAGGAGGGAGA
GGTGGAGGAGGGGGAGGTGGGGGAGGAGGAGGGCGTCGTCGTTAAGGGAG
AAGGGGAGGGGGGGAGGACGGGAGGGAGGAGACAGCGCCCGAACATGTCG
CCACCGAGATTGAGCAGCAGCTTATTGTAG
back to top

Coding sequence (CDS) from alignment at chr4:511638..513017+

>NO04G01720.1 ID=NO04G01720.1|Name=NO04G01720.1|organism=Nannochloropsis oceanica|type=CDS|length=1044bp|location=Sequence derived from alignment at chr4:511638..513017+ (Nannochloropsis oceanica)
ATGGAGGAAGGTGCGGTCGTGGAGGAGCCACCCAAGCCGGCGGCTGTCCA
GGAGGAGGGAGAAGAGGAGGAGGGGAAGCAAGCGGTTGCTGCTGGCAACG
AGGAGGGCGAGGGAGAGGAAGGGGTTGTCCCTGACGCCACCGCACCGGCT
GAAGGTGTGAAGGAAGCGAATGTAGACGGTACAAATGGCGGCGGCGATGT
TGCAGGGATCTCCGCCATGGAAGAGGAAGGAGAAGTGCTGGAGGACGACG
GAAGAGAAGAAGGAGAGGAGATTGAGACGCAGCAGGCAGCAGCAGCAACG
CCCACAACAGCCACACTAATTCCATCCCCGAGATCAGCATTAATGGCCCC
ATCTTCATCCTCCTCAGCTTCCGTACAGCAGGAACAAGTGGAGGAGGGGC
ACGAAGTCTTTGTTGGGGGGGTGAAGCAAGGTGTAACGGAAGGAGAGCTC
CGCAAGGTTTTTGAAAAATGCGGGGAGGTGATAGGGGTGCGCTTGATGAA
AGACCGTCGTTCTAGGCAATTGAAAGGCTATGCCTTTGTGCGTTTCAAGA
CGAGTGAGGAGGCGGGAAGAGCGCAGGAGGAATTGACCGGATATGTGTTG
AACGGGAAGGCCTTGGAGGTGAACTCGTGCGAGGCAAATAAGAGGCTCAA
GGTGAGCAATCTGGACAGGAAGTGGACGCCAGAAATATTTAAGAATTTGA
TGGAAAAGGCCTTGCTGCCGTTTCCGGGGGTGGTGTTGCTGGAGCTGAAG
GAAGCAGAGGCGGGAGGGAAGGAGGAAGAGAAGTGGAAGGGAAAGAAGGG
TGGGAGGGTTGGCAAATATGAGGACGAATGGAAAGAGAATGTGAAAGAGA
AGGAGAGGGGAAGAGGGCAGAAAAATGCTATGAAAGTGGAGGAGGAGGAG
CAGGAGGAGGGAGAGGTGGAGGAGGGGGAGGTGGGGGAGGAGGAGGGCGT
CGTCGTTAAGGGAGAAGGGGAGGGGGGGAGGACGGGAGGGAGGAGACAGC
GCCCGAACATGTCGCCACCGAGATTGAGCAGCAGCTTATTGTAG
back to top
Synonyms
Publications