NO04G01710.1, NO04G01710.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO04G01710.1
Unique NameNO04G01710.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1326
Alignment locationchr4:510189..511514 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:510189..511514 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO04G01710.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO04G01710NO04G01710Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO04G01710.1NO04G01710.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO04G01710.1.cds1NO04G01710.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO04G01710.1 ID=NO04G01710.1|Name=NO04G01710.1|organism=Nannochloropsis oceanica|type=mRNA|length=1326bp
AGGCACATTATCCTGGTCATCATGGATACATCGTCCACCTCGGCTGTCCT
GCGGTCGCTTGTAGAGCGCGCCGTGATCAACAAGGGCCGCCTGTCAACAT
CCTCCTTTTCCTCGCCCTTGGTTCTCCTCCATGCCGACCCTACGGCGTCG
TTGTCCTCCCCCTCTTCCACCCACAAAGCCCAGGCATTTTCACGACATGC
CCACTTTTTGTACCACCATTTGCTGGGCAAGCTTCGGGACTCAACGCAAT
ACCGTGGTGTCGTCTTGGTGGGATTGGAGAACCCACCACGCATCATGTAT
CAATCAGACGAGGAGGGCCGGCAGGAGGGAGTGCTTGCGGCCTTGGATGG
TGTTACGATGCCAAATAGCGAGAGTGAAAGCACTATGCATATGGTGCCGC
CATTGGACTTGTCGTCGCCGGAGGCCTTTGTGGAGGACATCCGACGCGCC
TTGCCCTCGTCGCCATCCCCGTCCACACCGTCAAAAAGCAGGAGCAAAGA
GGAGGGTAAGGAGGACAAGGAGGGAAATGACAATGGGGGAAATGACAATG
GGGAGGAGGAGGACTTCGATGAAGACAGCCAGCAGAGTATTGCGCTGGGC
ATCGATTCCCTCAATATGCTATCATACCAATTAAAAAGCATGCCGGCCAC
CGTCATCGCCTTGCGGAAGCTCCTCCTCCACAGCAGCAGCGGCCCCTTCC
TCTCTCCCCTCCTCGCGGTCCTTCACTCCGAAGGCAACAATGGACGTTCA
TTACTTTCCCAAACCTGGCGTCTTGCTCTCGAAGATCTCGCTACGACTAA
CGTGTATCTGTATCCTCAAGATGAGGTGTCGGGCCGATGCCTTGTGTTGC
GAAAAAGCGCCTCGGGCAAGGTGCACGAGGATTACGAGAGTTATGCCATC
GATGGTAATGATGGGACCGTGCGTTTTACCTCTAGTTCCTCTACTTCCAT
TGCCGCTACTTCAAAACAAGACAAGAGTGTCACAGTGAAAGGCGCTTCTA
TGGTAGCGTTGACGTCAGCGAACGACAGCAGCAGTAAAAAGGAAGCAGCT
TTCCTGGAAAGCTTGCCTTTCCGCCTTTTCCTCACGGAGCAAGAACGGGC
CATGCGAGGTCAGGTAGTCCTACCGTATGAGCGGCAACGAAACAGTGGGG
GGCAAACCATCATGAATCAACCACGACAGCCTCTTATTTATCACGAGGTG
GAGGGAGGGGACGAGGACGAGGATGAGGAGGAGTACTACGACGACATCGA
CGATGATTTGGACTTGTAACGACAGAGAAAATTATGGTTTAGGAAAAGAA
AAGTTGGAGACAAAATTATGCTATCG
back to top

protein sequence of NO04G01710.1

>NO04G01710.1-protein ID=NO04G01710.1-protein|Name=NO04G01710.1|organism=Nannochloropsis oceanica|type=polypeptide|length=416bp
MDTSSTSAVLRSLVERAVINKGRLSTSSFSSPLVLLHADPTASLSSPSST
HKAQAFSRHAHFLYHHLLGKLRDSTQYRGVVLVGLENPPRIMYQSDEEGR
QEGVLAALDGVTMPNSESESTMHMVPPLDLSSPEAFVEDIRRALPSSPSP
STPSKSRSKEEGKEDKEGNDNGGNDNGEEEDFDEDSQQSIALGIDSLNML
SYQLKSMPATVIALRKLLLHSSSGPFLSPLLAVLHSEGNNGRSLLSQTWR
LALEDLATTNVYLYPQDEVSGRCLVLRKSASGKVHEDYESYAIDGNDGTV
RFTSSSSTSIAATSKQDKSVTVKGASMVALTSANDSSSKKEAAFLESLPF
RLFLTEQERAMRGQVVLPYERQRNSGGQTIMNQPRQPLIYHEVEGGDEDE
DEEEYYDDIDDDLDL*
back to top

mRNA from alignment at chr4:510189..511514+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO04G01710.1 ID=NO04G01710.1|Name=NO04G01710.1|organism=Nannochloropsis oceanica|type=mRNA|length=1326bp|location=Sequence derived from alignment at chr4:510189..511514+ (Nannochloropsis oceanica)
AGGCACATTATCCTGGTCATCATGGATACATCGTCCACCTCGGCTGTCCT
GCGGTCGCTTGTAGAGCGCGCCGTGATCAACAAGGGCCGCCTGTCAACAT
CCTCCTTTTCCTCGCCCTTGGTTCTCCTCCATGCCGACCCTACGGCGTCG
TTGTCCTCCCCCTCTTCCACCCACAAAGCCCAGGCATTTTCACGACATGC
CCACTTTTTGTACCACCATTTGCTGGGCAAGCTTCGGGACTCAACGCAAT
ACCGTGGTGTCGTCTTGGTGGGATTGGAGAACCCACCACGCATCATGTAT
CAATCAGACGAGGAGGGCCGGCAGGAGGGAGTGCTTGCGGCCTTGGATGG
TGTTACGATGCCAAATAGCGAGAGTGAAAGCACTATGCATATGGTGCCGC
CATTGGACTTGTCGTCGCCGGAGGCCTTTGTGGAGGACATCCGACGCGCC
TTGCCCTCGTCGCCATCCCCGTCCACACCGTCAAAAAGCAGGAGCAAAGA
GGAGGGTAAGGAGGACAAGGAGGGAAATGACAATGGGGGAAATGACAATG
GGGAGGAGGAGGACTTCGATGAAGACAGCCAGCAGAGTATTGCGCTGGGC
ATCGATTCCCTCAATATGCTATCATACCAATTAAAAAGCATGCCGGCCAC
CGTCATCGCCTTGCGGAAGCTCCTCCTCCACAGCAGCAGCGGCCCCTTCC
TCTCTCCCCTCCTCGCGGTCCTTCACTCCGAAGGCAACAATGGACGTTCA
TTACTTTCCCAAACCTGGCGTCTTGCTCTCGAAGATCTCGCTACGACTAA
CGTGTATCTGTATCCTCAAGATGAGGTGTCGGGCCGATGCCTTGTGTTGC
GAAAAAGCGCCTCGGGCAAGGTGCACGAGGATTACGAGAGTTATGCCATC
GATGGTAATGATGGGACCGTGCGTTTTACCTCTAGTTCCTCTACTTCCAT
TGCCGCTACTTCAAAACAAGACAAGAGTGTCACAGTGAAAGGCGCTTCTA
TGGTAGCGTTGACGTCAGCGAACGACAGCAGCAGTAAAAAGGAAGCAGCT
TTCCTGGAAAGCTTGCCTTTCCGCCTTTTCCTCACGGAGCAAGAACGGGC
CATGCGAGGTCAGGTAGTCCTACCGTATGAGCGGCAACGAAACAGTGGGG
GGCAAACCATCATGAATCAACCACGACAGCCTCTTATTTATCACGAGGTG
GAGGGAGGGGACGAGGACGAGGATGAGGAGGAGTACTACGACGACATCGA
CGATGATTTGGACTTGTAACGACAGAGAAAATTATGGTTTAGGAAAAGAA
AAGTTGGAGACAAAATTATGCTATCG
back to top

Coding sequence (CDS) from alignment at chr4:510189..511514+

>NO04G01710.1 ID=NO04G01710.1|Name=NO04G01710.1|organism=Nannochloropsis oceanica|type=CDS|length=1248bp|location=Sequence derived from alignment at chr4:510189..511514+ (Nannochloropsis oceanica)
ATGGATACATCGTCCACCTCGGCTGTCCTGCGGTCGCTTGTAGAGCGCGC
CGTGATCAACAAGGGCCGCCTGTCAACATCCTCCTTTTCCTCGCCCTTGG
TTCTCCTCCATGCCGACCCTACGGCGTCGTTGTCCTCCCCCTCTTCCACC
CACAAAGCCCAGGCATTTTCACGACATGCCCACTTTTTGTACCACCATTT
GCTGGGCAAGCTTCGGGACTCAACGCAATACCGTGGTGTCGTCTTGGTGG
GATTGGAGAACCCACCACGCATCATGTATCAATCAGACGAGGAGGGCCGG
CAGGAGGGAGTGCTTGCGGCCTTGGATGGTGTTACGATGCCAAATAGCGA
GAGTGAAAGCACTATGCATATGGTGCCGCCATTGGACTTGTCGTCGCCGG
AGGCCTTTGTGGAGGACATCCGACGCGCCTTGCCCTCGTCGCCATCCCCG
TCCACACCGTCAAAAAGCAGGAGCAAAGAGGAGGGTAAGGAGGACAAGGA
GGGAAATGACAATGGGGGAAATGACAATGGGGAGGAGGAGGACTTCGATG
AAGACAGCCAGCAGAGTATTGCGCTGGGCATCGATTCCCTCAATATGCTA
TCATACCAATTAAAAAGCATGCCGGCCACCGTCATCGCCTTGCGGAAGCT
CCTCCTCCACAGCAGCAGCGGCCCCTTCCTCTCTCCCCTCCTCGCGGTCC
TTCACTCCGAAGGCAACAATGGACGTTCATTACTTTCCCAAACCTGGCGT
CTTGCTCTCGAAGATCTCGCTACGACTAACGTGTATCTGTATCCTCAAGA
TGAGGTGTCGGGCCGATGCCTTGTGTTGCGAAAAAGCGCCTCGGGCAAGG
TGCACGAGGATTACGAGAGTTATGCCATCGATGGTAATGATGGGACCGTG
CGTTTTACCTCTAGTTCCTCTACTTCCATTGCCGCTACTTCAAAACAAGA
CAAGAGTGTCACAGTGAAAGGCGCTTCTATGGTAGCGTTGACGTCAGCGA
ACGACAGCAGCAGTAAAAAGGAAGCAGCTTTCCTGGAAAGCTTGCCTTTC
CGCCTTTTCCTCACGGAGCAAGAACGGGCCATGCGAGGTCAGGTAGTCCT
ACCGTATGAGCGGCAACGAAACAGTGGGGGGCAAACCATCATGAATCAAC
CACGACAGCCTCTTATTTATCACGAGGTGGAGGGAGGGGACGAGGACGAG
GATGAGGAGGAGTACTACGACGACATCGACGATGATTTGGACTTGTAA
back to top
Synonyms
Publications