|
Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr4 | genome | chr4:494223..496952 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO04G01640.1 vs.
Match: XP_005854881.1 (tpr domain-containing protein, partial [Nannochloropsis gaditana CCMP526]; EKU21489.1 tpr domain-containing protein, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 453.4 bits (1165), Expect = 1.700e-123 Identity = 257/362 (70.99%), Postives = 305/362 (84.25%), Query Frame = 0
Query: 545 EDDDDDDNDDDDEEEEEDEEEETEGHEPSELEMRQRLRLLHTMSSVSSLDEAATLLNKAMLSTASGKYEEALRLLDDVLGVAGAEYATMVEADMQARAAKVKGTILQEMGLMKEASVWYELSVRAGHLLLRQVPISEDIGEYFAPLRYVHNQLTQFYLSVHAYNLVLEHFEQLLALTDNAAERRLILREFERLSLEHDFWQDVTPGMLDQELEQGKGWYREGKLEEATLQFRRVVQLARLASFSSASGGRRLMEARALGNYATVLKDLHKCDDAILSYRLCCRILQELDEGQMERRMLNGLSLCLMERERWMDAKEVCGKLLGVTEREDNMTLVRARMEEIEEQLR-----KEEERKEEGEE 902
+++D++D +D+DEEEEE+EE E E HEPSE+EMRQRLRLLHTMSSVSS+ EAATLLN+AML+TA G++E+AL LLDDVLG+A E ++ EA MQARAAKVKGT+LQEMGLMKEASVWYELSVRAG LL+Q P+SED+ +YF LRYVHNQL QFYLSV A+ LVLEHFEQL+ALTD+A +RR +LREFERLSLEHDFWQDVTPGMLDQELEQG+ WYRE EEA LQFRRVVQLARLASFSS G R++EARALGNYATVLKDL +CD++IL+YRLCCR+L+EL+E QMERRMLNGLSL L+E R+ DA VC +LL +TER+DN+ LV+ R+EEI+ LR E E +EG E
Sbjct: 1 DEEDEEDEEDEDEEEEEEEEAERETHEPSEIEMRQRLRLLHTMSSVSSMGEAATLLNRAMLNTACGRFEDALCLLDDVLGMASTETTSVEEARMQARAAKVKGTVLQEMGLMKEASVWYELSVRAGRRLLQQAPLSEDLRKYFPSLRYVHNQLAQFYLSVRAFALVLEHFEQLVALTDDAGDRRRLLREFERLSLEHDFWQDVTPGMLDQELEQGRRWYREKCWEEAALQFRRVVQLARLASFSSGD-GTRMVEARALGNYATVLKDLRRCDESILAYRLCCRLLEELEEEQMERRMLNGLSLSLIEAHRYEDAAVVCERLLVLTERDDNVELVKTRLEEIQACLRDGRRTMERESVDEGNE 361
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO04G01640.1 ID=NO04G01640.1|Name=NO04G01640.1|organism=Nannochloropsis oceanica|type=mRNA|length=2730bp ATGCCCCCTGGGCGCACATGCGGCACACATTCCAGACTCGCCTCTCCACC CACATTACCCACCCTGGGCGGATGCAATTCGTCACGCAGCATTGGCGGTG GTAGTTGCAGCTTCATCAATCCCGTCACGGGAGGGGAGGACTACACGCAG GACGGTTTAGCCTTCTGGAAGGAGGCATTTGGTCGTGGACGTTTGGTGGC ATGGCCTCGATTTGTCGAGGCGGTGGGAGAAATGATGCGGACGACTTACC CGGGGGAGCTGCAAGGTTTTGTGGAATTGGAAGATGTGCTTCGTTATTTG ATCGATCGAAGCGAGGGGAACCGTGCACGGAATCTGATCGCCTTAGAGGA ATGGGCTGTGTTTTTACATCGATTCGGTCCGCTGGAGTGCTGTATCGGAA AAGCGGCGCGGTCATTTTTTGTGGTGACGGAGGGAGGGACGGAGGGATGG GGAGAGATGGTGCCTTGGTTTCACGGGAATATCACAAGGCAAAAAGCCAA AGAGATTGTGCTCGGGGGGGGAGCGGGAAAAAGGCCAGGAAGTTTTTTGG TGCGTTTCAGCGCAACGAACCCCCGAAATTTCACCCTGACCTATTTGGAC GAGGGGGAGCTGAAGCACAAGCAGCAACAGCAGCAGCAACAGCAGCAGCA GCAAGTGATATCCCCTCTACCAGCAACGTACAAGAATGTCCTCCTTCACA ACCGCGGTCCACTCGGCTTTGCTCTGGATGCATCAGCTCCCGAAGAAGAA TGTTTTCCCACCGTGCGTGAGCTCGTTGATTGCAAGCATGGGTGGAGCCT GCCCTGTTCCTCTGAACTCGCCGCGGGCTTCCGAAATGAGGTGCGGCAAC GACGCAGCAGCAGCACCACCACCACCACAACCACAACCACCATCACCACC AACAATAGTAGCGTCAGTTGCAGGAGCAGCCCTCCCATCCCTCTACACCA GCATACCCCCCCCTCTCTGGCGTGGACACACAACAAGAGCGTGACGAAAA GTAGCTGTAACGGTCTCACCACCGCGCCCTCCTCCTTGTCCTCCTCCTCG ACCTCGATTGACTCAGCAGTAGCAGCAGTGTCAGCTGAAGGCTCTAGCGA TGCTCACCATGACCGTCATAATGGGCAGCAGCAAAGAAGATTCAATGGTA GAAAAAGTCATTCCTCTATAGGCTGGGGAGAGGGAGCGAGGGAAGGAGGG ACGCGACGGTTATCAGGACCCCTTCGAAATGACCATGGGTTAAATGGAAG GGCAATGAGCGTTGGAGGGGGGAAGGGGGGAGTGGGCTTGTCGAAGGGGA TGATGGACTCGCCGGTATTTTCACCGGAGGGGAACTGGGAGGATGAGGAA GGGGGGGAGGGGGAGGAGGACGAGGCCGAACTAGAGAGGGAGGAAGAGGT GAGAAGAGATGAGCGTGCACACAGAAATTTGGATGGAGAGGACGAGGATG CGGACGATGAGGAGGACGATGACGAGGAGGATGATGGTGTAAGAAGTCAG ACGACGCTCGCATCCTCCGGGGGGAAAGTGCAAGGGAGGAGGAGAAGGAG AAGGCGGAGGAGGAGTGGTAGCAGCAACTCCCCTGACGACGACAACGACG ACGACGACGACGATATTCTCAATGATGAGGATGAGGACGACGATGATGAT GATAATGATGATGATGATGAGGAGGAGGAGGAGGATGAAGAAGAGGAAAC CGAAGGCCACGAGCCTTCTGAACTGGAAATGCGACAACGCCTCCGTTTGC TCCACACCATGTCTTCTGTCTCTTCCTTGGACGAAGCCGCCACCTTACTA AACAAAGCAATGCTGTCCACTGCGTCGGGGAAATACGAGGAAGCTCTCCG TCTGTTGGATGACGTCTTGGGCGTCGCGGGGGCCGAATACGCCACTATGG TAGAGGCAGACATGCAGGCCCGTGCAGCCAAAGTAAAGGGCACAATACTG CAAGAAATGGGTCTCATGAAAGAAGCGAGCGTGTGGTACGAGCTTTCTGT CAGGGCGGGCCACCTACTCCTACGGCAGGTCCCTATTTCCGAAGATATAG GAGAGTATTTTGCACCCTTACGGTACGTGCATAACCAGCTTACGCAGTTC TATTTGAGCGTCCACGCGTACAATTTAGTCTTAGAGCACTTCGAGCAGCT GCTTGCGTTGACTGACAATGCGGCCGAGCGACGGTTGATTCTCAGGGAAT TTGAACGGTTGTCGCTCGAGCATGATTTCTGGCAAGACGTAACGCCGGGT ATGCTGGACCAGGAGCTGGAGCAAGGGAAGGGATGGTATAGGGAGGGTAA GCTAGAGGAGGCCACATTGCAGTTCAGGCGGGTGGTGCAACTTGCCCGAT TGGCTTCGTTTTCCTCGGCGAGTGGGGGGAGAAGGTTGATGGAAGCACGG GCGTTGGGGAATTATGCAACGGTGCTGAAAGATTTGCACAAATGTGACGA CGCGATTCTGAGCTATCGGTTGTGTTGTCGGATTTTGCAGGAGTTGGATG AAGGCCAGATGGAGAGGAGAATGCTGAATGGGCTGAGCCTGTGTTTGATG GAGAGGGAGAGGTGGATGGATGCGAAGGAGGTGTGTGGGAAACTTTTGGG AGTGACGGAAAGGGAGGACAATATGACTTTGGTCCGTGCGAGGATGGAGG AAATTGAAGAACAATTGAGGAAGGAGGAGGAAAGGAAAGAGGAAGGGGAG GAGGGATGGGAAGATGCGCAAGGAGGGTGA back to topprotein sequence of NO04G01640.1 >NO04G01640.1-protein ID=NO04G01640.1-protein|Name=NO04G01640.1|organism=Nannochloropsis oceanica|type=polypeptide|length=910bp MPPGRTCGTHSRLASPPTLPTLGGCNSSRSIGGGSCSFINPVTGGEDYTQ DGLAFWKEAFGRGRLVAWPRFVEAVGEMMRTTYPGELQGFVELEDVLRYL IDRSEGNRARNLIALEEWAVFLHRFGPLECCIGKAARSFFVVTEGGTEGW GEMVPWFHGNITRQKAKEIVLGGGAGKRPGSFLVRFSATNPRNFTLTYLD EGELKHKQQQQQQQQQQQVISPLPATYKNVLLHNRGPLGFALDASAPEEE CFPTVRELVDCKHGWSLPCSSELAAGFRNEVRQRRSSSTTTTTTTTTITT NNSSVSCRSSPPIPLHQHTPPSLAWTHNKSVTKSSCNGLTTAPSSLSSSS TSIDSAVAAVSAEGSSDAHHDRHNGQQQRRFNGRKSHSSIGWGEGAREGG TRRLSGPLRNDHGLNGRAMSVGGGKGGVGLSKGMMDSPVFSPEGNWEDEE GGEGEEDEAELEREEEVRRDERAHRNLDGEDEDADDEEDDDEEDDGVRSQ TTLASSGGKVQGRRRRRRRRRSGSSNSPDDDNDDDDDDILNDEDEDDDDD DNDDDDEEEEEDEEEETEGHEPSELEMRQRLRLLHTMSSVSSLDEAATLL NKAMLSTASGKYEEALRLLDDVLGVAGAEYATMVEADMQARAAKVKGTIL QEMGLMKEASVWYELSVRAGHLLLRQVPISEDIGEYFAPLRYVHNQLTQF YLSVHAYNLVLEHFEQLLALTDNAAERRLILREFERLSLEHDFWQDVTPG MLDQELEQGKGWYREGKLEEATLQFRRVVQLARLASFSSASGGRRLMEAR ALGNYATVLKDLHKCDDAILSYRLCCRILQELDEGQMERRMLNGLSLCLM ERERWMDAKEVCGKLLGVTEREDNMTLVRARMEEIEEQLRKEEERKEEGE EGWEDAQGG* back to topmRNA from alignment at chr4:494223..496952- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO04G01640.1 ID=NO04G01640.1|Name=NO04G01640.1|organism=Nannochloropsis oceanica|type=mRNA|length=2730bp|location=Sequence derived from alignment at chr4:494223..496952- (Nannochloropsis oceanica) ATGCCCCCTGGGCGCACATGCGGCACACATTCCAGACTCGCCTCTCCACC
CACATTACCCACCCTGGGCGGATGCAATTCGTCACGCAGCATTGGCGGTG
GTAGTTGCAGCTTCATCAATCCCGTCACGGGAGGGGAGGACTACACGCAG
GACGGTTTAGCCTTCTGGAAGGAGGCATTTGGTCGTGGACGTTTGGTGGC
ATGGCCTCGATTTGTCGAGGCGGTGGGAGAAATGATGCGGACGACTTACC
CGGGGGAGCTGCAAGGTTTTGTGGAATTGGAAGATGTGCTTCGTTATTTG
ATCGATCGAAGCGAGGGGAACCGTGCACGGAATCTGATCGCCTTAGAGGA
ATGGGCTGTGTTTTTACATCGATTCGGTCCGCTGGAGTGCTGTATCGGAA
AAGCGGCGCGGTCATTTTTTGTGGTGACGGAGGGAGGGACGGAGGGATGG
GGAGAGATGGTGCCTTGGTTTCACGGGAATATCACAAGGCAAAAAGCCAA
AGAGATTGTGCTCGGGGGGGGAGCGGGAAAAAGGCCAGGAAGTTTTTTGG
TGCGTTTCAGCGCAACGAACCCCCGAAATTTCACCCTGACCTATTTGGAC
GAGGGGGAGCTGAAGCACAAGCAGCAACAGCAGCAGCAACAGCAGCAGCA
GCAAGTGATATCCCCTCTACCAGCAACGTACAAGAATGTCCTCCTTCACA
ACCGCGGTCCACTCGGCTTTGCTCTGGATGCATCAGCTCCCGAAGAAGAA
TGTTTTCCCACCGTGCGTGAGCTCGTTGATTGCAAGCATGGGTGGAGCCT
GCCCTGTTCCTCTGAACTCGCCGCGGGCTTCCGAAATGAGGTGCGGCAAC
GACGCAGCAGCAGCACCACCACCACCACAACCACAACCACCATCACCACC
AACAATAGTAGCGTCAGTTGCAGGAGCAGCCCTCCCATCCCTCTACACCA
GCATACCCCCCCCTCTCTGGCGTGGACACACAACAAGAGCGTGACGAAAA
GTAGCTGTAACGGTCTCACCACCGCGCCCTCCTCCTTGTCCTCCTCCTCG
ACCTCGATTGACTCAGCAGTAGCAGCAGTGTCAGCTGAAGGCTCTAGCGA
TGCTCACCATGACCGTCATAATGGGCAGCAGCAAAGAAGATTCAATGGTA
GAAAAAGTCATTCCTCTATAGGCTGGGGAGAGGGAGCGAGGGAAGGAGGG
ACGCGACGGTTATCAGGACCCCTTCGAAATGACCATGGGTTAAATGGAAG
GGCAATGAGCGTTGGAGGGGGGAAGGGGGGAGTGGGCTTGTCGAAGGGGA
TGATGGACTCGCCGGTATTTTCACCGGAGGGGAACTGGGAGGATGAGGAA
GGGGGGGAGGGGGAGGAGGACGAGGCCGAACTAGAGAGGGAGGAAGAGGT
GAGAAGAGATGAGCGTGCACACAGAAATTTGGATGGAGAGGACGAGGATG
CGGACGATGAGGAGGACGATGACGAGGAGGATGATGGTGTAAGAAGTCAG
ACGACGCTCGCATCCTCCGGGGGGAAAGTGCAAGGGAGGAGGAGAAGGAG
AAGGCGGAGGAGGAGTGGTAGCAGCAACTCCCCTGACGACGACAACGACG
ACGACGACGACGATATTCTCAATGATGAGGATGAGGACGACGATGATGAT
GATAATGATGATGATGATGAGGAGGAGGAGGAGGATGAAGAAGAGGAAAC
CGAAGGCCACGAGCCTTCTGAACTGGAAATGCGACAACGCCTCCGTTTGC
TCCACACCATGTCTTCTGTCTCTTCCTTGGACGAAGCCGCCACCTTACTA
AACAAAGCAATGCTGTCCACTGCGTCGGGGAAATACGAGGAAGCTCTCCG
TCTGTTGGATGACGTCTTGGGCGTCGCGGGGGCCGAATACGCCACTATGG
TAGAGGCAGACATGCAGGCCCGTGCAGCCAAAGTAAAGGGCACAATACTG
CAAGAAATGGGTCTCATGAAAGAAGCGAGCGTGTGGTACGAGCTTTCTGT
CAGGGCGGGCCACCTACTCCTACGGCAGGTCCCTATTTCCGAAGATATAG
GAGAGTATTTTGCACCCTTACGGTACGTGCATAACCAGCTTACGCAGTTC
TATTTGAGCGTCCACGCGTACAATTTAGTCTTAGAGCACTTCGAGCAGCT
GCTTGCGTTGACTGACAATGCGGCCGAGCGACGGTTGATTCTCAGGGAAT
TTGAACGGTTGTCGCTCGAGCATGATTTCTGGCAAGACGTAACGCCGGGT
ATGCTGGACCAGGAGCTGGAGCAAGGGAAGGGATGGTATAGGGAGGGTAA
GCTAGAGGAGGCCACATTGCAGTTCAGGCGGGTGGTGCAACTTGCCCGAT
TGGCTTCGTTTTCCTCGGCGAGTGGGGGGAGAAGGTTGATGGAAGCACGG
GCGTTGGGGAATTATGCAACGGTGCTGAAAGATTTGCACAAATGTGACGA
CGCGATTCTGAGCTATCGGTTGTGTTGTCGGATTTTGCAGGAGTTGGATG
AAGGCCAGATGGAGAGGAGAATGCTGAATGGGCTGAGCCTGTGTTTGATG
GAGAGGGAGAGGTGGATGGATGCGAAGGAGGTGTGTGGGAAACTTTTGGG
AGTGACGGAAAGGGAGGACAATATGACTTTGGTCCGTGCGAGGATGGAGG
AAATTGAAGAACAATTGAGGAAGGAGGAGGAAAGGAAAGAGGAAGGGGAG
GAGGGATGGGAAGATGCGCAAGGAGGGTGA back to topCoding sequence (CDS) from alignment at chr4:494223..496952- >NO04G01640.1 ID=NO04G01640.1|Name=NO04G01640.1|organism=Nannochloropsis oceanica|type=CDS|length=2730bp|location=Sequence derived from alignment at chr4:494223..496952- (Nannochloropsis oceanica) ATGCCCCCTGGGCGCACATGCGGCACACATTCCAGACTCGCCTCTCCACC CACATTACCCACCCTGGGCGGATGCAATTCGTCACGCAGCATTGGCGGTG GTAGTTGCAGCTTCATCAATCCCGTCACGGGAGGGGAGGACTACACGCAG GACGGTTTAGCCTTCTGGAAGGAGGCATTTGGTCGTGGACGTTTGGTGGC ATGGCCTCGATTTGTCGAGGCGGTGGGAGAAATGATGCGGACGACTTACC CGGGGGAGCTGCAAGGTTTTGTGGAATTGGAAGATGTGCTTCGTTATTTG ATCGATCGAAGCGAGGGGAACCGTGCACGGAATCTGATCGCCTTAGAGGA ATGGGCTGTGTTTTTACATCGATTCGGTCCGCTGGAGTGCTGTATCGGAA AAGCGGCGCGGTCATTTTTTGTGGTGACGGAGGGAGGGACGGAGGGATGG GGAGAGATGGTGCCTTGGTTTCACGGGAATATCACAAGGCAAAAAGCCAA AGAGATTGTGCTCGGGGGGGGAGCGGGAAAAAGGCCAGGAAGTTTTTTGG TGCGTTTCAGCGCAACGAACCCCCGAAATTTCACCCTGACCTATTTGGAC GAGGGGGAGCTGAAGCACAAGCAGCAACAGCAGCAGCAACAGCAGCAGCA GCAAGTGATATCCCCTCTACCAGCAACGTACAAGAATGTCCTCCTTCACA ACCGCGGTCCACTCGGCTTTGCTCTGGATGCATCAGCTCCCGAAGAAGAA TGTTTTCCCACCGTGCGTGAGCTCGTTGATTGCAAGCATGGGTGGAGCCT GCCCTGTTCCTCTGAACTCGCCGCGGGCTTCCGAAATGAGGTGCGGCAAC GACGCAGCAGCAGCACCACCACCACCACAACCACAACCACCATCACCACC AACAATAGTAGCGTCAGTTGCAGGAGCAGCCCTCCCATCCCTCTACACCA GCATACCCCCCCCTCTCTGGCGTGGACACACAACAAGAGCGTGACGAAAA GTAGCTGTAACGGTCTCACCACCGCGCCCTCCTCCTTGTCCTCCTCCTCG ACCTCGATTGACTCAGCAGTAGCAGCAGTGTCAGCTGAAGGCTCTAGCGA TGCTCACCATGACCGTCATAATGGGCAGCAGCAAAGAAGATTCAATGGTA GAAAAAGTCATTCCTCTATAGGCTGGGGAGAGGGAGCGAGGGAAGGAGGG ACGCGACGGTTATCAGGACCCCTTCGAAATGACCATGGGTTAAATGGAAG GGCAATGAGCGTTGGAGGGGGGAAGGGGGGAGTGGGCTTGTCGAAGGGGA TGATGGACTCGCCGGTATTTTCACCGGAGGGGAACTGGGAGGATGAGGAA GGGGGGGAGGGGGAGGAGGACGAGGCCGAACTAGAGAGGGAGGAAGAGGT GAGAAGAGATGAGCGTGCACACAGAAATTTGGATGGAGAGGACGAGGATG CGGACGATGAGGAGGACGATGACGAGGAGGATGATGGTGTAAGAAGTCAG ACGACGCTCGCATCCTCCGGGGGGAAAGTGCAAGGGAGGAGGAGAAGGAG AAGGCGGAGGAGGAGTGGTAGCAGCAACTCCCCTGACGACGACAACGACG ACGACGACGACGATATTCTCAATGATGAGGATGAGGACGACGATGATGAT GATAATGATGATGATGATGAGGAGGAGGAGGAGGATGAAGAAGAGGAAAC CGAAGGCCACGAGCCTTCTGAACTGGAAATGCGACAACGCCTCCGTTTGC TCCACACCATGTCTTCTGTCTCTTCCTTGGACGAAGCCGCCACCTTACTA AACAAAGCAATGCTGTCCACTGCGTCGGGGAAATACGAGGAAGCTCTCCG TCTGTTGGATGACGTCTTGGGCGTCGCGGGGGCCGAATACGCCACTATGG TAGAGGCAGACATGCAGGCCCGTGCAGCCAAAGTAAAGGGCACAATACTG CAAGAAATGGGTCTCATGAAAGAAGCGAGCGTGTGGTACGAGCTTTCTGT CAGGGCGGGCCACCTACTCCTACGGCAGGTCCCTATTTCCGAAGATATAG GAGAGTATTTTGCACCCTTACGGTACGTGCATAACCAGCTTACGCAGTTC TATTTGAGCGTCCACGCGTACAATTTAGTCTTAGAGCACTTCGAGCAGCT GCTTGCGTTGACTGACAATGCGGCCGAGCGACGGTTGATTCTCAGGGAAT TTGAACGGTTGTCGCTCGAGCATGATTTCTGGCAAGACGTAACGCCGGGT ATGCTGGACCAGGAGCTGGAGCAAGGGAAGGGATGGTATAGGGAGGGTAA GCTAGAGGAGGCCACATTGCAGTTCAGGCGGGTGGTGCAACTTGCCCGAT TGGCTTCGTTTTCCTCGGCGAGTGGGGGGAGAAGGTTGATGGAAGCACGG GCGTTGGGGAATTATGCAACGGTGCTGAAAGATTTGCACAAATGTGACGA CGCGATTCTGAGCTATCGGTTGTGTTGTCGGATTTTGCAGGAGTTGGATG AAGGCCAGATGGAGAGGAGAATGCTGAATGGGCTGAGCCTGTGTTTGATG GAGAGGGAGAGGTGGATGGATGCGAAGGAGGTGTGTGGGAAACTTTTGGG AGTGACGGAAAGGGAGGACAATATGACTTTGGTCCGTGCGAGGATGGAGG AAATTGAAGAACAATTGAGGAAGGAGGAGGAAAGGAAAGAGGAAGGGGAG GAGGGATGGGAAGATGCGCAAGGAGGGTGA back to top
|