NO04G01630.1, NO04G01630.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO04G01630.1
Unique NameNO04G01630.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1144
Alignment locationchr4:492983..494126 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:492983..494126 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO04G01630.1 vs.
Match: EWM28628.1 (3 (2 ) -bisphosphate nucleotidase [Nannochloropsis gaditana])

HSP 1 Score: 505.0 bits (1299), Expect = 1.500e-139
Identity = 242/275 (88.00%), Postives = 259/275 (94.18%), Query Frame = 0
Query:    1 MIIQAGAVKILAKDVVSIAKTAGDAIMAIYSFPDTVSWDVKAKSDDSPLTAADLAANNLICVSLKEKYPSIPIVSEENKLLPYDERSQWPYYWCIDPLDGTKEFLKRNGQFTVNIGLCQGNSPIFGVVHVPAMEPSKTYFGAKGQGAFVEVAGGESIPIQCKEFSETDSGLAIVASASHNTPETEAFISKYEEPTLKALGSSLKLLMVAEGEAHVYPRLAPTCEWDTCASHAIVEAAGGEVLQAEGGKACTPGVPVAYNKPEALNPFFIVYGKRR 276
            MIIQAGAVK+LAKDVVSIAKTAGDAIM+IY+FPDTVSWDVKAKSD+SPLTAADLAANNLIC SLKEKYPSIPIVSEENK+LPY+ERS WP+YWC+DPLDGTKEFLKRNGQFTVNIGLCQG SPIFGVVHVPAMEP+KTY+GAKG GAFVE+A    IPI+ KEFSE D  LAIVASASHNTPETE FISKY+ PTLKALGSSLKLLMVAEGEAHVYPRLAPTCEWDTCASHA+VEAAGGEVLQAEGGKAC PG+PV YNKP+ALNPFFIVYG+RR
Sbjct:    1 MIIQAGAVKVLAKDVVSIAKTAGDAIMSIYAFPDTVSWDVKAKSDNSPLTAADLAANNLICASLKEKYPSIPIVSEENKMLPYEERSNWPFYWCVDPLDGTKEFLKRNGQFTVNIGLCQGKSPIFGVVHVPAMEPAKTYYGAKGHGAFVEIADEPPIPIKVKEFSEKDPNLAIVASASHNTPETENFISKYQNPTLKALGSSLKLLMVAEGEAHVYPRLAPTCEWDTCASHAVVEAAGGEVLQAEGGKACQPGLPVEYNKPDALNPFFIVYGRRR 275          
The following BLAST results are available for this feature:
BLAST of NO04G01630.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28628.11.500e-13988.003 (2 ) -bisphosphate nucleotidase [Nannochloropsis... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO04G01630NO04G01630Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO04G01630.1NO04G01630.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO04G01630.1.cds1NO04G01630.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO04G01630.1 ID=NO04G01630.1|Name=NO04G01630.1|organism=Nannochloropsis oceanica|type=mRNA|length=1144bp
ACAGCAATTACTAGCACAAGTAAATTCGTTTCCCGTTATCATGATCATCC
AGGCCGGCGCCGTTAAAATTCTGGCCAAGGACGTGGTCTCCATCGCCAAA
ACTGCCGGAGACGCCATCATGGCCATCTACTCCTTCCCTGACACGGTCAG
CTGGGACGTCAAAGCCAAGTCCGATGACTCCCCCCTGACCGCCGCGGACT
TAGCAGCCAACAATCTGATTTGTGTGTCCCTGAAGGAGAAGTACCCTTCC
ATCCCCATAGTCTCGGAAGAAAATAAGCTTTTGCCCTACGACGAACGCAG
CCAATGGCCTTACTACTGGTGCATCGACCCTTTGGACGGGACTAAGGAAT
TTCTCAAGCGCAACGGTCAGTTCACGGTGAACATTGGCTTGTGTCAAGGC
AATTCCCCTATATTCGGGGTGGTACACGTGCCGGCCATGGAGCCGTCCAA
GACATATTTTGGTGCCAAGGGACAAGGGGCCTTCGTGGAGGTTGCGGGCG
GGGAATCCATCCCTATCCAGTGCAAGGAATTCAGCGAGACTGACTCGGGG
CTTGCGATTGTGGCATCGGCATCGCACAACACCCCGGAGACAGAGGCCTT
TATTAGTAAATATGAGGAGCCGACGCTCAAGGCGTTGGGATCGTCATTAA
AATTGCTGATGGTGGCAGAGGGCGAGGCCCACGTGTACCCGCGCTTGGCC
CCCACCTGTGAATGGGACACGTGTGCATCGCATGCCATTGTGGAAGCGGC
GGGAGGGGAAGTGCTGCAGGCAGAGGGAGGGAAGGCTTGCACCCCCGGGG
TTCCGGTGGCGTATAATAAGCCCGAGGCGTTGAATCCATTTTTTATTGTG
TACGGAAAGAGGCGTAAGTGAGAGGGGAAGAGAAGGAACGAAATGGGAAG
GTGGGAAAAGGAGCTTGATGATTGCATGAGTAGAAAGTAAGTGTTGCGGC
TGTCGCTCTTTATTGGCCCACCGGCACCTCGGCCCCAGGAAAGAGAAAGC
AAGAAAGTGGATAGAGGTGGGTAGAGAGGCAGGTGGACATAGTTAGTTGT
TTGTGTGCATTCTGCTGACAGCGCCTCTTTGATGTGCTTCCATATAAAGT
TCTTTTGAAGGTAAATCAACATCAAAAACGACGACAAGAACATG
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protein sequence of NO04G01630.1

>NO04G01630.1-protein ID=NO04G01630.1-protein|Name=NO04G01630.1|organism=Nannochloropsis oceanica|type=polypeptide|length=277bp
MIIQAGAVKILAKDVVSIAKTAGDAIMAIYSFPDTVSWDVKAKSDDSPLT
AADLAANNLICVSLKEKYPSIPIVSEENKLLPYDERSQWPYYWCIDPLDG
TKEFLKRNGQFTVNIGLCQGNSPIFGVVHVPAMEPSKTYFGAKGQGAFVE
VAGGESIPIQCKEFSETDSGLAIVASASHNTPETEAFISKYEEPTLKALG
SSLKLLMVAEGEAHVYPRLAPTCEWDTCASHAIVEAAGGEVLQAEGGKAC
TPGVPVAYNKPEALNPFFIVYGKRRK*
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mRNA from alignment at chr4:492983..494126+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO04G01630.1 ID=NO04G01630.1|Name=NO04G01630.1|organism=Nannochloropsis oceanica|type=mRNA|length=1144bp|location=Sequence derived from alignment at chr4:492983..494126+ (Nannochloropsis oceanica)
ACAGCAATTACTAGCACAAGTAAATTCGTTTCCCGTTATCATGATCATCC AGGCCGGCGCCGTTAAAATTCTGGCCAAGGACGTGGTCTCCATCGCCAAA ACTGCCGGAGACGCCATCATGGCCATCTACTCCTTCCCTGACACGGTCAG CTGGGACGTCAAAGCCAAGTCCGATGACTCCCCCCTGACCGCCGCGGACT TAGCAGCCAACAATCTGATTTGTGTGTCCCTGAAGGAGAAGTACCCTTCC ATCCCCATAGTCTCGGAAGAAAATAAGCTTTTGCCCTACGACGAACGCAG CCAATGGCCTTACTACTGGTGCATCGACCCTTTGGACGGGACTAAGGAAT TTCTCAAGCGCAACGGTCAGTTCACGGTGAACATTGGCTTGTGTCAAGGC AATTCCCCTATATTCGGGGTGGTACACGTGCCGGCCATGGAGCCGTCCAA GACATATTTTGGTGCCAAGGGACAAGGGGCCTTCGTGGAGGTTGCGGGCG GGGAATCCATCCCTATCCAGTGCAAGGAATTCAGCGAGACTGACTCGGGG CTTGCGATTGTGGCATCGGCATCGCACAACACCCCGGAGACAGAGGCCTT TATTAGTAAATATGAGGAGCCGACGCTCAAGGCGTTGGGATCGTCATTAA AATTGCTGATGGTGGCAGAGGGCGAGGCCCACGTGTACCCGCGCTTGGCC CCCACCTGTGAATGGGACACGTGTGCATCGCATGCCATTGTGGAAGCGGC GGGAGGGGAAGTGCTGCAGGCAGAGGGAGGGAAGGCTTGCACCCCCGGGG TTCCGGTGGCGTATAATAAGCCCGAGGCGTTGAATCCATTTTTTATTGTG TACGGAAAGAGGCGTAAGTGAGAGGGGAAGAGAAGGAACGAAATGGGAAG GTGGGAAAAGGAGCTTGATGATTGCATGAGTAGAAAGTAAGTGTTGCGGC TGTCGCTCTTTATTGGCCCACCGGCACCTCGGCCCCAGGAAAGAGAAAGC AAGAAAGTGGATAGAGGTGGGTAGAGAGGCAGGTGGACATAGTTAGTTGT TTGTGTGCATTCTGCTGACAGCGCCTCTTTGATGTGCTTCCATATAAAGT TCTTTTGAAGGTAAATCAACATCAAAAACGACGACAAGAACATG
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Coding sequence (CDS) from alignment at chr4:492983..494126+

>NO04G01630.1 ID=NO04G01630.1|Name=NO04G01630.1|organism=Nannochloropsis oceanica|type=CDS|length=831bp|location=Sequence derived from alignment at chr4:492983..494126+ (Nannochloropsis oceanica)
ATGATCATCCAGGCCGGCGCCGTTAAAATTCTGGCCAAGGACGTGGTCTC
CATCGCCAAAACTGCCGGAGACGCCATCATGGCCATCTACTCCTTCCCTG
ACACGGTCAGCTGGGACGTCAAAGCCAAGTCCGATGACTCCCCCCTGACC
GCCGCGGACTTAGCAGCCAACAATCTGATTTGTGTGTCCCTGAAGGAGAA
GTACCCTTCCATCCCCATAGTCTCGGAAGAAAATAAGCTTTTGCCCTACG
ACGAACGCAGCCAATGGCCTTACTACTGGTGCATCGACCCTTTGGACGGG
ACTAAGGAATTTCTCAAGCGCAACGGTCAGTTCACGGTGAACATTGGCTT
GTGTCAAGGCAATTCCCCTATATTCGGGGTGGTACACGTGCCGGCCATGG
AGCCGTCCAAGACATATTTTGGTGCCAAGGGACAAGGGGCCTTCGTGGAG
GTTGCGGGCGGGGAATCCATCCCTATCCAGTGCAAGGAATTCAGCGAGAC
TGACTCGGGGCTTGCGATTGTGGCATCGGCATCGCACAACACCCCGGAGA
CAGAGGCCTTTATTAGTAAATATGAGGAGCCGACGCTCAAGGCGTTGGGA
TCGTCATTAAAATTGCTGATGGTGGCAGAGGGCGAGGCCCACGTGTACCC
GCGCTTGGCCCCCACCTGTGAATGGGACACGTGTGCATCGCATGCCATTG
TGGAAGCGGCGGGAGGGGAAGTGCTGCAGGCAGAGGGAGGGAAGGCTTGC
ACCCCCGGGGTTCCGGTGGCGTATAATAAGCCCGAGGCGTTGAATCCATT
TTTTATTGTGTACGGAAAGAGGCGTAAGTGA
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Synonyms
Publications