|
Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr4 | genome | chr4:482915..485721 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO04G01600.1 vs.
Match: XP_005762908.1 (hypothetical protein EMIHUDRAFT_358197 [Emiliania huxleyi CCMP1516]; EOD10479.1 hypothetical protein EMIHUDRAFT_358197 [Emiliania huxleyi CCMP1516]) HSP 1 Score: 210.7 bits (535), Expect = 8.200e-51 Identity = 113/295 (38.31%), Postives = 157/295 (53.22%), Query Frame = 0
Query: 98 VIAYLRHGHTATRHVFPSKDMATTWKPRIMTAFEQERCEALRHEVQVFFGEEA-----YEACTTTDACVAQLKKKDAEAITPFLQVFNLWRRHPGIKELVFHKTLAHIAAQLLGVPRVRIFQDSLFVKRPGDDSTLLHTDLGTAPLDTNDFITAWIPLTHVPAVEEGGSPLQFCQGSHIDMAARYWYDPHDNGDGDDTAALLPPLLRYPVMDHAPLELGDVTWHHGWCLHGSPGNEREEERVALTVCFMSADAKVMASDVLFVPDEEDSLSYEEWVGEVGLGNVVDHKLTPVVWP 388
++ + R GH TR + P + K + + + EALR +V+V G++ +++ + L+++ E PF+Q+FNLWR P + EL LA AA LLGV RVR++QDS F+KRPGD T H+DL APLDTN F+T W+PL V A ++GGS L F GSH D+A +W+ GD + YP+ D L GD TWHHGW LH + N + R A+ V F AD L D+ED+ S W+G+V G H+L P+VWP
Sbjct: 1 MLEFERTGHVRTRKLLPGAATSALSK-EVDRLYTERESEALRQKVRVLLGDDRLARAEHKSAASPHVLRRILREELPEGAVPFMQLFNLWRTSPMVHELWRSPALAGTAASLLGVERVRLYQDSYFLKRPGDGPTHWHSDLSMAPLDTNSFVTCWLPLHDVAAPDDGGSSLVFASGSHRDVALNFWH-------GDPRRPVDASTRGYPLRDGGALRAGDATWHHGWVLHSAAPNMGDVPRRAVAVSFY-ADGASRLQGALRSQDDEDAESCVAWLGDVRPGRAARHRLLPLVWP 286
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO04G01600.1 ID=NO04G01600.1|Name=NO04G01600.1|organism=Nannochloropsis oceanica|type=mRNA|length=2373bp GGCCAAATTATGAGAAGGTCCCTGAGTGAGTTCGGGATGGGATAGCGATT CAGTCAAAAGCACCAGATCCGACACGTGGCTGTGTTCGGCAACTGCCTCT TCATGGTATATCACCTTTGCGCAGAGAAAGCGCAAGCAGCGAAGCAAGGT TGCTTGCAACCGCCGCCGATGTTGCATCTGTGCGATGCGGTGCGTCATAA TATTATCTTATCTTCTGCGACGCTCTGCAGATGGGACAAGACGTATCTCT TCCGCGTAATCAATACCCCACCACGACAACGACAACCCTCTTTTCTCGCG ATGGACGAGCCAGGATGGCCGATTTTATGTGACCACGCCGAGGGGATCGG AAATGAACGAAGTGGCTTCTTATTTGTAAAAGTGTCTGCATCGCATTTTG ATTCATGCCATCCAAACACCCCTTTACATGAGAAGCCACTCCCCTTGGCG TGATTACATTGTACTTGCCAATTTGGTTTGTCCTCCGTGTGAAATGCTCA AGTGAGTTGTAGTCGAGGTGGGGCATTACGGCAATAATACGTCATTTCCC ATCCGCAACCTGCCCGGTCTGATTAAATAATCGTGGTCGCTTGCCCGTTC ATTCCTCGCTCGTGTAAAAAAATGACGTAAACACATACTGATCCACCACA CATTTTATATATGCATATCCTGGCATATTCTGCACGAGCTCGAAGTAGAA TATCCCCCATCCTCCATTCCACTTCTCCCCTCCCCTCTTCCTCCCCTTCT CCCTTCCCTCCTCCTTCTCTTCTCCTTCCCTCCTTCCCTCCTCCCCTATC CCTTTCACTCTCTCCTTCTCCTCTTCCCCTTCTCCCCTCCCCTCCTCACC GCCCTTCCGAGCCCCCCCTTCTTCTTCCTTGACCTCAGTAATTTTCCTTG CCAGGCAAGCCGGCGGCCGAACAAGGCGTCGAGCGCCAAGGCTGTGCATT ATCCATGATTGCCTTTGCGATACACCATACGATCACCGACAGACGCCCGC TCTCCAGCCCTACGCACAGGCGCAACAACTCAATCGAGGCCCTTGTCGTG TACATGCTCGTCCGACTCCCACGTCGTTCGGGCGCGCCTTAACTTGAGAA TCCTCATCGTCACCGCAGCGATGGTGGCTTCTTTAAGGGGGGGTGAGCGT GGTGTTATTTTGTCATGCTCGGCCTTCCTACCCCTCGCACTGTTGCTAAT TTGGCAAGTCCAACGCTGCCACACCTTCCCCCTCGTCCCCAACCACCGTC ATCCCAACCGCCCGCTATCGTGGCAGGAGAAGTGCCTGTCCGAAAGAAAA AGGGCGCCCCCACCACCTCCTCTCCCTGGTACCACACACTTCGTCTCTGC TCTCACTGCAAAAGCCTTCGCAGACTCGGGCGTCCATACTGCCCTCCTTC CAACCGAGCAAGTGATAGCCTACCTCCGACACGGCCACACCGCCACACGG CATGTCTTCCCGTCCAAGGATATGGCTACTACCTGGAAGCCCCGCATCAT GACGGCCTTTGAGCAAGAACGATGCGAGGCATTAAGACATGAAGTCCAGG TTTTCTTCGGGGAGGAAGCTTATGAGGCATGTACTACCACCGACGCGTGC GTGGCACAATTGAAAAAGAAGGACGCAGAGGCCATCACGCCTTTTTTGCA GGTATTCAACCTGTGGCGGCGACATCCGGGGATCAAAGAGTTGGTGTTCC ATAAGACCTTGGCCCATATCGCCGCCCAGCTCCTCGGCGTCCCCCGTGTC CGCATTTTCCAAGATTCCCTTTTCGTCAAGCGTCCAGGAGACGATTCCAC CCTCCTCCACACCGACTTGGGGACGGCGCCATTGGACACGAACGACTTTA TCACTGCCTGGATCCCCCTGACGCATGTCCCGGCGGTGGAGGAGGGAGGA AGCCCGTTGCAGTTTTGCCAAGGCTCCCACATCGACATGGCCGCCCGCTA CTGGTACGACCCTCACGATAATGGCGATGGCGACGACACTGCCGCCCTCC TTCCCCCCCTCCTTCGATACCCTGTGATGGATCACGCGCCTTTGGAGCTG GGGGATGTAACTTGGCACCATGGCTGGTGCTTGCACGGGAGTCCAGGGAA TGAAAGGGAGGAGGAGAGGGTGGCTTTGACTGTGTGTTTCATGAGTGCTG ACGCAAAGGTGATGGCGAGTGATGTGCTTTTCGTCCCCGACGAGGAAGAT AGCTTGTCCTACGAAGAGTGGGTTGGGGAGGTGGGCTTGGGAAACGTGGT CGATCACAAGTTGACGCCCGTGGTGTGGCCGTGAGGGAGGGAGGAAGTGA GTGAAGGAGGAAAAAGAGAGGACTGACAAGAGTCAAAGTACAGCCACTTT TGTAATATAAAATTGAAACCGCC back to topprotein sequence of NO04G01600.1 >NO04G01600.1-protein ID=NO04G01600.1-protein|Name=NO04G01600.1|organism=Nannochloropsis oceanica|type=polypeptide|length=388bp MVASLRGGERGVILSCSAFLPLALLLIWQVQRCHTFPLVPNHRHPNRPLS WQEKCLSERKRAPPPPPLPGTTHFVSALTAKAFADSGVHTALLPTEQVIA YLRHGHTATRHVFPSKDMATTWKPRIMTAFEQERCEALRHEVQVFFGEEA YEACTTTDACVAQLKKKDAEAITPFLQVFNLWRRHPGIKELVFHKTLAHI AAQLLGVPRVRIFQDSLFVKRPGDDSTLLHTDLGTAPLDTNDFITAWIPL THVPAVEEGGSPLQFCQGSHIDMAARYWYDPHDNGDGDDTAALLPPLLRY PVMDHAPLELGDVTWHHGWCLHGSPGNEREEERVALTVCFMSADAKVMAS DVLFVPDEEDSLSYEEWVGEVGLGNVVDHKLTPVVWP* back to topmRNA from alignment at chr4:482915..485721- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO04G01600.1 ID=NO04G01600.1|Name=NO04G01600.1|organism=Nannochloropsis oceanica|type=mRNA|length=2807bp|location=Sequence derived from alignment at chr4:482915..485721- (Nannochloropsis oceanica) GGCCAAATTATGAGAAGGTCCCTGAGTGAGTTCGGGATGGGATAGCGATT
CAGTCAAAAGCACCAGATCCGACACGTGGCTGTGTTCGGCAACTGCCTCT
TCATGGTATATCACCTTTGCGCAGAGAAAGCGCAAGCAGCGAAGCAAGGT
TGCTTGCAACCGCCGCCGATGTTGCATCTGTGCGATGCGGTGCGTCATAA
TATTATCTTATCTTCTGCGACGCTCTGCAGATGGGACAAGACGTATCTCT
TCCGCGTAATCAATACCCCACCACGACAACGACAACCCTCTTTTCTCGCG
ATGGACGAGCCAGGATGGCCGATTTTATGTGACCACGCCGAGGGGATCGG
AAATGAACGAAGTGGCTTCTTATTTGTAAAAGTGTCTGCATCGCATTTTG
ATTCATGCCATCCAAACACCCCTTTACATGAGAAGCCACTCCCCTTGGCG
TGATTACATTGTACTTGCCAATTTGGTTTGTCCTCCGTGTGAAATGCTCA
AGTGAGTTGTAGTCGAGGTGGGGCATTACGGCAATAATACGTCATTTCCC
ATCCGCAACCTGCCCGGTCTGATTAAATAATCGTGGTCGCTTGCCCGTTC
ATTCCTCGCTCGTGTAAAAAAATGACGTAAACACATACTGATCCACCACA
CATTTTATATATGCATATCCTGGCATATTCTGCACGAGCTCGAAGTAGAA
TATCCCCCATCCTCCATTCCACTTCTCCCCTCCCCTCTTCCTCCCCTTCT
CCCTTCCCTCCTCCTTCTCTTCTCCTTCCCTCCTTCCCTCCTCCCCTATC
CCTTTCACTCTCTCCTTCTCCTCTTCCCCTTCTCCCCTCCCCTCCTCACC
GCCCTTCCGAGCCCCCCCTTCTTCTTCCTTGACCTCAGTAATTTTCCTTG
CCAGGCAAGCCGGCGGCCGAACAAGGCGTCGAGCGCCAAGGCTGTGCATT
ATCCATGATTGCCTTTGCGATACACCATACGATCACCGACAGACGCCCGC
TCTCCAGCCCTACGCACAGGCGCAACAACTCAATCGAGGCCCTTGTCGTG
TACATGCTCGTCCGACTCCCACGTCGTTCGGGCGCGCCTTAACTTGAGAA
TCCTCATCGTCACCGCAGCGATGGTGGCTTCTTTAAGGGGGGGTGAGCGT
GGTGTTATTTTGTCATGCTCGGCCTTCCTACCCCTCGCACTGTTGCTAAT
TTGGCAAGTCCAACGCTGCCACACCTTCCCCCTCGTCCCCAACCACCGTC
ATCCCAACCGCCCGCTATCGTGGCAGGAGAAGTGCCTGTCCGAAAGAAAA
AGGGCGCCCCCACCACCTCCTCTCCCTGGTACCACACACTTCGTCTCTGC
TCTCACTGCAAAAGCCTTCGCAGACTCGGGCGTCCATACTGCCCTCCTTC
CAACCGAGCAAGTGATAGCCTACCTCCGACACGGCCACACCGCCACACGG
CATGTCTTCCCGTCCAAGGATATGGCTACTACCTGGAAGCCCCGCATCAT
GACGGCCTTTGAGCAAGAACGATGCGAGGCATTAAGACATGAAGTCCAGG
TTTTCTTCGGGGAGGAAGCTTATGAGGCATGTACTACCACCGACGCGTGC
GTGGCACAATTGAAAAAGAAGGACGCAGAGGCCATCACGCCTTTTTTGCA
GGTATTCAACCTGTGGCGGCGACATCCGGGGATCAAAGAGTTGGTGTTCC
ATAAGGTGAGTGTGGTCGTCTGGCACTGAAGGAGGGGAAAGGGGGCGACG
GGAAGGATGGTAGGGAAGGAGGTGTCGCAATGCTGGAAGGAGGGGAGTGC
TGGGTTTTCGTCTTAATAGAGACTGAGCTTTGATTTAGGTGCATCAAAAC
CGCACATTGAGCTTTGATTAAGGTGCATCGTCACGTGGTCCTAGGAAATT
CAGCTTCCTGCAGATTGCAGCATACGCTCTCTCGTCCAGCCTCTCACTCG
TGCCCTCCCCCTGTCTCATCTTTTCCCTCCAAGACCTTGGCCCATATCGC
CGCCCAGCTCCTCGGCGTCCCCCGTGTCCGCATTTTCCAAGATTCCCTTT
TCGTCAAGCGTCCAGGAGACGATTCCACCCTCCTCCACACCGACTTGGGG
ACGGCGCCATTGGACACGAACGACTTTATCACTGCCTGGATCCCCCTGAC
GCATGTCCCGGCGGTGGAGGAGGGAGGAAGCCCGTTGCAGTTTTGCCAAG
GGTGAGTGGGGTGGGGAGGGAGGGAAAAGAAGCGGTATTGATGAAGCGTA
CTACGCTTTTTGTACTGATGACAAGTGGAGGATCCATGCATCTCCCTACC
CGTTGAACTTCCCTCCTCTTTCCTTCCTTCCCCCTCCTTCCCTCCCTCTT
TCCGTAGCTCCCACATCGACATGGCCGCCCGCTACTGGTACGACCCTCAC
GATAATGGCGATGGCGACGACACTGCCGCCCTCCTTCCCCCCCTCCTTCG
ATACCCTGTGATGGATCACGCGCCTTTGGAGCTGGGGGATGTAACTTGGC
ACCATGGCTGGTGCTTGCACGGGAGTCCAGGGAATGAAAGGGAGGAGGAG
AGGGTGGCTTTGACTGTGTGTTTCATGAGTGCTGACGCAAAGGTGATGGC
GAGTGATGTGCTTTTCGTCCCCGACGAGGAAGATAGCTTGTCCTACGAAG
AGTGGGTTGGGGAGGTGGGCTTGGGAAACGTGGTCGATCACAAGTTGACG
CCCGTGGTGTGGCCGTGAGGGAGGGAGGAAGTGAGTGAAGGAGGAAAAAG
AGAGGACTGACAAGAGTCAAAGTACAGCCACTTTTGTAATATAAAATTGA
AACCGCC back to topCoding sequence (CDS) from alignment at chr4:482915..485721- >NO04G01600.1 ID=NO04G01600.1|Name=NO04G01600.1|organism=Nannochloropsis oceanica|type=CDS|length=1164bp|location=Sequence derived from alignment at chr4:482915..485721- (Nannochloropsis oceanica) ATGGTGGCTTCTTTAAGGGGGGGTGAGCGTGGTGTTATTTTGTCATGCTC GGCCTTCCTACCCCTCGCACTGTTGCTAATTTGGCAAGTCCAACGCTGCC ACACCTTCCCCCTCGTCCCCAACCACCGTCATCCCAACCGCCCGCTATCG TGGCAGGAGAAGTGCCTGTCCGAAAGAAAAAGGGCGCCCCCACCACCTCC TCTCCCTGGTACCACACACTTCGTCTCTGCTCTCACTGCAAAAGCCTTCG CAGACTCGGGCGTCCATACTGCCCTCCTTCCAACCGAGCAAGTGATAGCC TACCTCCGACACGGCCACACCGCCACACGGCATGTCTTCCCGTCCAAGGA TATGGCTACTACCTGGAAGCCCCGCATCATGACGGCCTTTGAGCAAGAAC GATGCGAGGCATTAAGACATGAAGTCCAGGTTTTCTTCGGGGAGGAAGCT TATGAGGCATGTACTACCACCGACGCGTGCGTGGCACAATTGAAAAAGAA GGACGCAGAGGCCATCACGCCTTTTTTGCAGGTATTCAACCTGTGGCGGC GACATCCGGGGATCAAAGAGTTGGTGTTCCATAAGACCTTGGCCCATATC GCCGCCCAGCTCCTCGGCGTCCCCCGTGTCCGCATTTTCCAAGATTCCCT TTTCGTCAAGCGTCCAGGAGACGATTCCACCCTCCTCCACACCGACTTGG GGACGGCGCCATTGGACACGAACGACTTTATCACTGCCTGGATCCCCCTG ACGCATGTCCCGGCGGTGGAGGAGGGAGGAAGCCCGTTGCAGTTTTGCCA AGGCTCCCACATCGACATGGCCGCCCGCTACTGGTACGACCCTCACGATA ATGGCGATGGCGACGACACTGCCGCCCTCCTTCCCCCCCTCCTTCGATAC CCTGTGATGGATCACGCGCCTTTGGAGCTGGGGGATGTAACTTGGCACCA TGGCTGGTGCTTGCACGGGAGTCCAGGGAATGAAAGGGAGGAGGAGAGGG TGGCTTTGACTGTGTGTTTCATGAGTGCTGACGCAAAGGTGATGGCGAGT GATGTGCTTTTCGTCCCCGACGAGGAAGATAGCTTGTCCTACGAAGAGTG GGTTGGGGAGGTGGGCTTGGGAAACGTGGTCGATCACAAGTTGACGCCCG TGGTGTGGCCGTGA back to top
|