NO04G01600.1, NO04G01600.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO04G01600.1
Unique NameNO04G01600.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2373
Alignment locationchr4:482915..485721 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:482915..485721 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO04G01600.1 vs.
Match: XP_005762908.1 (hypothetical protein EMIHUDRAFT_358197 [Emiliania huxleyi CCMP1516]; EOD10479.1 hypothetical protein EMIHUDRAFT_358197 [Emiliania huxleyi CCMP1516])

HSP 1 Score: 210.7 bits (535), Expect = 8.200e-51
Identity = 113/295 (38.31%), Postives = 157/295 (53.22%), Query Frame = 0
Query:   98 VIAYLRHGHTATRHVFPSKDMATTWKPRIMTAFEQERCEALRHEVQVFFGEEA-----YEACTTTDACVAQLKKKDAEAITPFLQVFNLWRRHPGIKELVFHKTLAHIAAQLLGVPRVRIFQDSLFVKRPGDDSTLLHTDLGTAPLDTNDFITAWIPLTHVPAVEEGGSPLQFCQGSHIDMAARYWYDPHDNGDGDDTAALLPPLLRYPVMDHAPLELGDVTWHHGWCLHGSPGNEREEERVALTVCFMSADAKVMASDVLFVPDEEDSLSYEEWVGEVGLGNVVDHKLTPVVWP 388
            ++ + R GH  TR + P    +   K  +   + +   EALR +V+V  G++      +++  +       L+++  E   PF+Q+FNLWR  P + EL     LA  AA LLGV RVR++QDS F+KRPGD  T  H+DL  APLDTN F+T W+PL  V A ++GGS L F  GSH D+A  +W+       GD    +      YP+ D   L  GD TWHHGW LH +  N  +  R A+ V F  AD        L   D+ED+ S   W+G+V  G    H+L P+VWP
Sbjct:    1 MLEFERTGHVRTRKLLPGAATSALSK-EVDRLYTERESEALRQKVRVLLGDDRLARAEHKSAASPHVLRRILREELPEGAVPFMQLFNLWRTSPMVHELWRSPALAGTAASLLGVERVRLYQDSYFLKRPGDGPTHWHSDLSMAPLDTNSFVTCWLPLHDVAAPDDGGSSLVFASGSHRDVALNFWH-------GDPRRPVDASTRGYPLRDGGALRAGDATWHHGWVLHSAAPNMGDVPRRAVAVSFY-ADGASRLQGALRSQDDEDAESCVAWLGDVRPGRAARHRLLPLVWP 286          
The following BLAST results are available for this feature:
BLAST of NO04G01600.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005762908.18.200e-5138.31hypothetical protein EMIHUDRAFT_358197 [Emiliania ... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO04G01600NO04G01600Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO04G01600.1NO04G01600.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO04G01600.1.cds1NO04G01600.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G01600.1.cds2NO04G01600.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G01600.1.cds3NO04G01600.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO04G01600.1 ID=NO04G01600.1|Name=NO04G01600.1|organism=Nannochloropsis oceanica|type=mRNA|length=2373bp
GGCCAAATTATGAGAAGGTCCCTGAGTGAGTTCGGGATGGGATAGCGATT
CAGTCAAAAGCACCAGATCCGACACGTGGCTGTGTTCGGCAACTGCCTCT
TCATGGTATATCACCTTTGCGCAGAGAAAGCGCAAGCAGCGAAGCAAGGT
TGCTTGCAACCGCCGCCGATGTTGCATCTGTGCGATGCGGTGCGTCATAA
TATTATCTTATCTTCTGCGACGCTCTGCAGATGGGACAAGACGTATCTCT
TCCGCGTAATCAATACCCCACCACGACAACGACAACCCTCTTTTCTCGCG
ATGGACGAGCCAGGATGGCCGATTTTATGTGACCACGCCGAGGGGATCGG
AAATGAACGAAGTGGCTTCTTATTTGTAAAAGTGTCTGCATCGCATTTTG
ATTCATGCCATCCAAACACCCCTTTACATGAGAAGCCACTCCCCTTGGCG
TGATTACATTGTACTTGCCAATTTGGTTTGTCCTCCGTGTGAAATGCTCA
AGTGAGTTGTAGTCGAGGTGGGGCATTACGGCAATAATACGTCATTTCCC
ATCCGCAACCTGCCCGGTCTGATTAAATAATCGTGGTCGCTTGCCCGTTC
ATTCCTCGCTCGTGTAAAAAAATGACGTAAACACATACTGATCCACCACA
CATTTTATATATGCATATCCTGGCATATTCTGCACGAGCTCGAAGTAGAA
TATCCCCCATCCTCCATTCCACTTCTCCCCTCCCCTCTTCCTCCCCTTCT
CCCTTCCCTCCTCCTTCTCTTCTCCTTCCCTCCTTCCCTCCTCCCCTATC
CCTTTCACTCTCTCCTTCTCCTCTTCCCCTTCTCCCCTCCCCTCCTCACC
GCCCTTCCGAGCCCCCCCTTCTTCTTCCTTGACCTCAGTAATTTTCCTTG
CCAGGCAAGCCGGCGGCCGAACAAGGCGTCGAGCGCCAAGGCTGTGCATT
ATCCATGATTGCCTTTGCGATACACCATACGATCACCGACAGACGCCCGC
TCTCCAGCCCTACGCACAGGCGCAACAACTCAATCGAGGCCCTTGTCGTG
TACATGCTCGTCCGACTCCCACGTCGTTCGGGCGCGCCTTAACTTGAGAA
TCCTCATCGTCACCGCAGCGATGGTGGCTTCTTTAAGGGGGGGTGAGCGT
GGTGTTATTTTGTCATGCTCGGCCTTCCTACCCCTCGCACTGTTGCTAAT
TTGGCAAGTCCAACGCTGCCACACCTTCCCCCTCGTCCCCAACCACCGTC
ATCCCAACCGCCCGCTATCGTGGCAGGAGAAGTGCCTGTCCGAAAGAAAA
AGGGCGCCCCCACCACCTCCTCTCCCTGGTACCACACACTTCGTCTCTGC
TCTCACTGCAAAAGCCTTCGCAGACTCGGGCGTCCATACTGCCCTCCTTC
CAACCGAGCAAGTGATAGCCTACCTCCGACACGGCCACACCGCCACACGG
CATGTCTTCCCGTCCAAGGATATGGCTACTACCTGGAAGCCCCGCATCAT
GACGGCCTTTGAGCAAGAACGATGCGAGGCATTAAGACATGAAGTCCAGG
TTTTCTTCGGGGAGGAAGCTTATGAGGCATGTACTACCACCGACGCGTGC
GTGGCACAATTGAAAAAGAAGGACGCAGAGGCCATCACGCCTTTTTTGCA
GGTATTCAACCTGTGGCGGCGACATCCGGGGATCAAAGAGTTGGTGTTCC
ATAAGACCTTGGCCCATATCGCCGCCCAGCTCCTCGGCGTCCCCCGTGTC
CGCATTTTCCAAGATTCCCTTTTCGTCAAGCGTCCAGGAGACGATTCCAC
CCTCCTCCACACCGACTTGGGGACGGCGCCATTGGACACGAACGACTTTA
TCACTGCCTGGATCCCCCTGACGCATGTCCCGGCGGTGGAGGAGGGAGGA
AGCCCGTTGCAGTTTTGCCAAGGCTCCCACATCGACATGGCCGCCCGCTA
CTGGTACGACCCTCACGATAATGGCGATGGCGACGACACTGCCGCCCTCC
TTCCCCCCCTCCTTCGATACCCTGTGATGGATCACGCGCCTTTGGAGCTG
GGGGATGTAACTTGGCACCATGGCTGGTGCTTGCACGGGAGTCCAGGGAA
TGAAAGGGAGGAGGAGAGGGTGGCTTTGACTGTGTGTTTCATGAGTGCTG
ACGCAAAGGTGATGGCGAGTGATGTGCTTTTCGTCCCCGACGAGGAAGAT
AGCTTGTCCTACGAAGAGTGGGTTGGGGAGGTGGGCTTGGGAAACGTGGT
CGATCACAAGTTGACGCCCGTGGTGTGGCCGTGAGGGAGGGAGGAAGTGA
GTGAAGGAGGAAAAAGAGAGGACTGACAAGAGTCAAAGTACAGCCACTTT
TGTAATATAAAATTGAAACCGCC
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protein sequence of NO04G01600.1

>NO04G01600.1-protein ID=NO04G01600.1-protein|Name=NO04G01600.1|organism=Nannochloropsis oceanica|type=polypeptide|length=388bp
MVASLRGGERGVILSCSAFLPLALLLIWQVQRCHTFPLVPNHRHPNRPLS
WQEKCLSERKRAPPPPPLPGTTHFVSALTAKAFADSGVHTALLPTEQVIA
YLRHGHTATRHVFPSKDMATTWKPRIMTAFEQERCEALRHEVQVFFGEEA
YEACTTTDACVAQLKKKDAEAITPFLQVFNLWRRHPGIKELVFHKTLAHI
AAQLLGVPRVRIFQDSLFVKRPGDDSTLLHTDLGTAPLDTNDFITAWIPL
THVPAVEEGGSPLQFCQGSHIDMAARYWYDPHDNGDGDDTAALLPPLLRY
PVMDHAPLELGDVTWHHGWCLHGSPGNEREEERVALTVCFMSADAKVMAS
DVLFVPDEEDSLSYEEWVGEVGLGNVVDHKLTPVVWP*
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mRNA from alignment at chr4:482915..485721-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO04G01600.1 ID=NO04G01600.1|Name=NO04G01600.1|organism=Nannochloropsis oceanica|type=mRNA|length=2807bp|location=Sequence derived from alignment at chr4:482915..485721- (Nannochloropsis oceanica)
GGCCAAATTATGAGAAGGTCCCTGAGTGAGTTCGGGATGGGATAGCGATT CAGTCAAAAGCACCAGATCCGACACGTGGCTGTGTTCGGCAACTGCCTCT TCATGGTATATCACCTTTGCGCAGAGAAAGCGCAAGCAGCGAAGCAAGGT TGCTTGCAACCGCCGCCGATGTTGCATCTGTGCGATGCGGTGCGTCATAA TATTATCTTATCTTCTGCGACGCTCTGCAGATGGGACAAGACGTATCTCT TCCGCGTAATCAATACCCCACCACGACAACGACAACCCTCTTTTCTCGCG ATGGACGAGCCAGGATGGCCGATTTTATGTGACCACGCCGAGGGGATCGG AAATGAACGAAGTGGCTTCTTATTTGTAAAAGTGTCTGCATCGCATTTTG ATTCATGCCATCCAAACACCCCTTTACATGAGAAGCCACTCCCCTTGGCG TGATTACATTGTACTTGCCAATTTGGTTTGTCCTCCGTGTGAAATGCTCA AGTGAGTTGTAGTCGAGGTGGGGCATTACGGCAATAATACGTCATTTCCC ATCCGCAACCTGCCCGGTCTGATTAAATAATCGTGGTCGCTTGCCCGTTC ATTCCTCGCTCGTGTAAAAAAATGACGTAAACACATACTGATCCACCACA CATTTTATATATGCATATCCTGGCATATTCTGCACGAGCTCGAAGTAGAA TATCCCCCATCCTCCATTCCACTTCTCCCCTCCCCTCTTCCTCCCCTTCT CCCTTCCCTCCTCCTTCTCTTCTCCTTCCCTCCTTCCCTCCTCCCCTATC CCTTTCACTCTCTCCTTCTCCTCTTCCCCTTCTCCCCTCCCCTCCTCACC GCCCTTCCGAGCCCCCCCTTCTTCTTCCTTGACCTCAGTAATTTTCCTTG CCAGGCAAGCCGGCGGCCGAACAAGGCGTCGAGCGCCAAGGCTGTGCATT ATCCATGATTGCCTTTGCGATACACCATACGATCACCGACAGACGCCCGC TCTCCAGCCCTACGCACAGGCGCAACAACTCAATCGAGGCCCTTGTCGTG TACATGCTCGTCCGACTCCCACGTCGTTCGGGCGCGCCTTAACTTGAGAA TCCTCATCGTCACCGCAGCGATGGTGGCTTCTTTAAGGGGGGGTGAGCGT GGTGTTATTTTGTCATGCTCGGCCTTCCTACCCCTCGCACTGTTGCTAAT TTGGCAAGTCCAACGCTGCCACACCTTCCCCCTCGTCCCCAACCACCGTC ATCCCAACCGCCCGCTATCGTGGCAGGAGAAGTGCCTGTCCGAAAGAAAA AGGGCGCCCCCACCACCTCCTCTCCCTGGTACCACACACTTCGTCTCTGC TCTCACTGCAAAAGCCTTCGCAGACTCGGGCGTCCATACTGCCCTCCTTC CAACCGAGCAAGTGATAGCCTACCTCCGACACGGCCACACCGCCACACGG CATGTCTTCCCGTCCAAGGATATGGCTACTACCTGGAAGCCCCGCATCAT GACGGCCTTTGAGCAAGAACGATGCGAGGCATTAAGACATGAAGTCCAGG TTTTCTTCGGGGAGGAAGCTTATGAGGCATGTACTACCACCGACGCGTGC GTGGCACAATTGAAAAAGAAGGACGCAGAGGCCATCACGCCTTTTTTGCA GGTATTCAACCTGTGGCGGCGACATCCGGGGATCAAAGAGTTGGTGTTCC ATAAGGTGAGTGTGGTCGTCTGGCACTGAAGGAGGGGAAAGGGGGCGACG GGAAGGATGGTAGGGAAGGAGGTGTCGCAATGCTGGAAGGAGGGGAGTGC TGGGTTTTCGTCTTAATAGAGACTGAGCTTTGATTTAGGTGCATCAAAAC CGCACATTGAGCTTTGATTAAGGTGCATCGTCACGTGGTCCTAGGAAATT CAGCTTCCTGCAGATTGCAGCATACGCTCTCTCGTCCAGCCTCTCACTCG TGCCCTCCCCCTGTCTCATCTTTTCCCTCCAAGACCTTGGCCCATATCGC CGCCCAGCTCCTCGGCGTCCCCCGTGTCCGCATTTTCCAAGATTCCCTTT TCGTCAAGCGTCCAGGAGACGATTCCACCCTCCTCCACACCGACTTGGGG ACGGCGCCATTGGACACGAACGACTTTATCACTGCCTGGATCCCCCTGAC GCATGTCCCGGCGGTGGAGGAGGGAGGAAGCCCGTTGCAGTTTTGCCAAG GGTGAGTGGGGTGGGGAGGGAGGGAAAAGAAGCGGTATTGATGAAGCGTA CTACGCTTTTTGTACTGATGACAAGTGGAGGATCCATGCATCTCCCTACC CGTTGAACTTCCCTCCTCTTTCCTTCCTTCCCCCTCCTTCCCTCCCTCTT TCCGTAGCTCCCACATCGACATGGCCGCCCGCTACTGGTACGACCCTCAC GATAATGGCGATGGCGACGACACTGCCGCCCTCCTTCCCCCCCTCCTTCG ATACCCTGTGATGGATCACGCGCCTTTGGAGCTGGGGGATGTAACTTGGC ACCATGGCTGGTGCTTGCACGGGAGTCCAGGGAATGAAAGGGAGGAGGAG AGGGTGGCTTTGACTGTGTGTTTCATGAGTGCTGACGCAAAGGTGATGGC GAGTGATGTGCTTTTCGTCCCCGACGAGGAAGATAGCTTGTCCTACGAAG AGTGGGTTGGGGAGGTGGGCTTGGGAAACGTGGTCGATCACAAGTTGACG CCCGTGGTGTGGCCGTGAGGGAGGGAGGAAGTGAGTGAAGGAGGAAAAAG AGAGGACTGACAAGAGTCAAAGTACAGCCACTTTTGTAATATAAAATTGA AACCGCC
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Coding sequence (CDS) from alignment at chr4:482915..485721-

>NO04G01600.1 ID=NO04G01600.1|Name=NO04G01600.1|organism=Nannochloropsis oceanica|type=CDS|length=1164bp|location=Sequence derived from alignment at chr4:482915..485721- (Nannochloropsis oceanica)
ATGGTGGCTTCTTTAAGGGGGGGTGAGCGTGGTGTTATTTTGTCATGCTC
GGCCTTCCTACCCCTCGCACTGTTGCTAATTTGGCAAGTCCAACGCTGCC
ACACCTTCCCCCTCGTCCCCAACCACCGTCATCCCAACCGCCCGCTATCG
TGGCAGGAGAAGTGCCTGTCCGAAAGAAAAAGGGCGCCCCCACCACCTCC
TCTCCCTGGTACCACACACTTCGTCTCTGCTCTCACTGCAAAAGCCTTCG
CAGACTCGGGCGTCCATACTGCCCTCCTTCCAACCGAGCAAGTGATAGCC
TACCTCCGACACGGCCACACCGCCACACGGCATGTCTTCCCGTCCAAGGA
TATGGCTACTACCTGGAAGCCCCGCATCATGACGGCCTTTGAGCAAGAAC
GATGCGAGGCATTAAGACATGAAGTCCAGGTTTTCTTCGGGGAGGAAGCT
TATGAGGCATGTACTACCACCGACGCGTGCGTGGCACAATTGAAAAAGAA
GGACGCAGAGGCCATCACGCCTTTTTTGCAGGTATTCAACCTGTGGCGGC
GACATCCGGGGATCAAAGAGTTGGTGTTCCATAAGACCTTGGCCCATATC
GCCGCCCAGCTCCTCGGCGTCCCCCGTGTCCGCATTTTCCAAGATTCCCT
TTTCGTCAAGCGTCCAGGAGACGATTCCACCCTCCTCCACACCGACTTGG
GGACGGCGCCATTGGACACGAACGACTTTATCACTGCCTGGATCCCCCTG
ACGCATGTCCCGGCGGTGGAGGAGGGAGGAAGCCCGTTGCAGTTTTGCCA
AGGCTCCCACATCGACATGGCCGCCCGCTACTGGTACGACCCTCACGATA
ATGGCGATGGCGACGACACTGCCGCCCTCCTTCCCCCCCTCCTTCGATAC
CCTGTGATGGATCACGCGCCTTTGGAGCTGGGGGATGTAACTTGGCACCA
TGGCTGGTGCTTGCACGGGAGTCCAGGGAATGAAAGGGAGGAGGAGAGGG
TGGCTTTGACTGTGTGTTTCATGAGTGCTGACGCAAAGGTGATGGCGAGT
GATGTGCTTTTCGTCCCCGACGAGGAAGATAGCTTGTCCTACGAAGAGTG
GGTTGGGGAGGTGGGCTTGGGAAACGTGGTCGATCACAAGTTGACGCCCG
TGGTGTGGCCGTGA
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Synonyms
Publications