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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr4 | genome | chr4:478218..480624 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO04G01580.2 vs.
Match: EWM28565.1 (zinc finger ccch domain-containing protein [Nannochloropsis gaditana]) HSP 1 Score: 636.3 bits (1640), Expect = 6.700e-179 Identity = 336/430 (78.14%), Postives = 359/430 (83.49%), Query Frame = 0
Query: 1 MGERGMQIKADLNKEGWESSDFPLVCETCLGDNPYVRMTKEAAGKACKICDRPFTIFRWRPGAKARFKKTEVCQTCAKMKNVCQTCVLDLTYGLPVQVRDAVLAEAAASGEGGAAPLALTVPQSDTNKQWFAGQHDRMVAEGHADSYGKAQINEKLMRLSRAQPYYKRNLPHKCTFYAKGECTRGDRCPFLHEMPTSRNDPLANQNIKDRFYGQDDPVAQKMLGRVAAKDAEDLAPLIPPSDPSIMTLMVGGMEGGSITEMELRDAFYAFGELASVRLIHAKFIAFVEYTTREAAEAAAKALHNNLTLQGLRLRVTWATRPAGGALANSSTSSGSFAMYGGGGGGGSVSAAAAAGGGAGGGDGSMPSPPSTFPPLPPPQ---YMPALPPSNWTPGTIPPPPPGG-PPPMRHPPQQYMQQGGALSLPPPQQ 427
MGERGMQIKADLNKEGWESSDFPLVCETCLGDNPYVRMTKE AGKACKICDRPFTIFRWRPGAKARFKKTEVCQTCAKMKNVCQTCVLDLTYGLPVQVRD+VLAEAAA+GEGGAA A+TVPQSDTNKQWFAGQHDRMVAEGHADSYGKAQINEKLMRLSRAQPYYKRNLPHKCTFYAKGECTRGDRCPFLHEMPTSR+DPLANQNIKDRFYGQDDPVAQKMLGR A+K+ ED APLIPP+DP I TLMVGGMEGG++TE E+R+AFY FGE+A VR++ AK +AFVEYTTREAAEAAAKALHNNLTLQGLRLRV+WA RPAG N T +GSFA GG G G+ A G PLPPPQ + P PS+W PG+ PPPGG PPP HP Q ++ G SLPPPQQ
Sbjct: 1 MGERGMQIKADLNKEGWESSDFPLVCETCLGDNPYVRMTKEPAGKACKICDRPFTIFRWRPGAKARFKKTEVCQTCAKMKNVCQTCVLDLTYGLPVQVRDSVLAEAAAAGEGGAASYAMTVPQSDTNKQWFAGQHDRMVAEGHADSYGKAQINEKLMRLSRAQPYYKRNLPHKCTFYAKGECTRGDRCPFLHEMPTSRSDPLANQNIKDRFYGQDDPVAQKMLGRAASKEKEDQAPLIPPTDPEIKTLMVGGMEGGAVTETEMREAFYGFGEVAGVRMVPAKHLAFVEYTTREAAEAAAKALHNNLTLQGLRLRVSWALRPAGSGPFNPGTGTGSFASAGGAGPLGAPPDFANQPVSTMAGQSL---------PLPPPQPLNFPPGPSPSSWVPGSNTLPPPGGYPPPGPHPGQGGVR--GPPSLPPPQQ 419
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO04G01580.2 ID=NO04G01580.2|Name=NO04G01580.2|organism=Nannochloropsis oceanica|type=mRNA|length=1927bp
ACAGTCCGTGCAACCATGGGGGAACGGGGCATGCAGATTAAGGCGGACCT
AAACAAGGAAGGTTGGGAATCGAGCGACTTCCCCTTGGTCTGTGAGACGT
GTCTGGGGGACAACCCTTACGTGCGTATGACCAAGGAAGCAGCCGGCAAG
GCGTGCAAGATTTGTGACCGGCCCTTCACTATCTTTAGGTGGCGTCCCGG
CGCCAAGGCCCGCTTTAAGAAGACCGAGGTGTGTCAGACGTGCGCAAAGA
TGAAGAACGTGTGCCAAACCTGCGTCCTGGATCTGACCTATGGCCTACCC
GTGCAAGTCCGCGACGCCGTCTTGGCGGAAGCTGCGGCGTCGGGGGAGGG
TGGCGCGGCGCCGTTGGCTTTGACCGTTCCACAGAGCGATACCAATAAGC
AATGGTTTGCGGGACAGCATGATAGAATGGTGGCGGAGGGCCACGCGGAT
TCGTATGGCAAGGCGCAGATCAATGAGAAGCTGATGCGGTTGTCTCGGGC
TCAGCCTTACTACAAGCGGAATCTGCCACATAAGTGCACGTTTTATGCCA
AGGGGGAGTGTACGCGTGGGGACCGATGTCCGTTTTTGCACGAAATGCCC
ACCTCTCGAAATGACCCCCTTGCCAACCAAAATATCAAAGACCGTTTCTA
CGGGCAAGATGATCCAGTGGCTCAAAAGATGCTTGGCCGCGTGGCGGCAA
AGGATGCGGAAGACCTCGCTCCTCTGATCCCTCCCTCCGACCCCAGCATT
ATGACGCTCATGGTGGGAGGGATGGAGGGTGGGTCCATCACGGAGATGGA
ATTGCGGGATGCGTTCTATGCGTTTGGGGAGCTGGCGAGTGTGAGGTTGA
TCCATGCTAAATTTATCGCGTTCGTGGAGTATACGACAAGGGAAGCAGCA
GAAGCAGCAGCCAAGGCCCTCCACAACAACCTCACTTTGCAGGGACTCCG
CCTTCGAGTCACCTGGGCGACGCGGCCCGCGGGTGGAGCGCTTGCCAACT
CTAGCACCAGCAGCGGCAGTTTTGCCATGTATGGTGGTGGTGGGGGTGGG
GGTAGCGTTTCTGCTGCTGCTGCTGCTGGTGGTGGTGCCGGTGGTGGTGA
TGGTAGCATGCCTTCTCCTCCGAGCACCTTCCCCCCTCTCCCCCCTCCTC
AATATATGCCTGCCCTACCCCCTTCCAACTGGACACCAGGCACCATTCCT
CCGCCCCCTCCCGGCGGTCCTCCTCCCATGCGCCATCCCCCTCAACAGTA
CATGCAGCAGGGAGGGGCCCTCTCCCTTCCTCCTCCTCAGCAGGTAGATT
TGAAGTACAGATAGGAGAGATCACATAGGAGAGATCACATAGGAGAGAGG
AGGGGAATATTTCCATGAGGATATGATGATTTACAACCAGCTACTCTGAA
TCGAGCTCTTAGTCGGCTTAACAACACCGTGTAGTCAATTCAAGATATTT
CTAACTACTAGATGGGCTGATCCTCACACAGACACGCACTTTCCCACACT
CGACTCCCTTTCCTCTCCACACCAGCTAGACTGAATCTTTCACTCACTCA
CTCATTATTCACCTACTCACTCACTCCATCCCACAGCCCTACTACCCTTC
CATGGACCCTCAGCGCATGGGAGCTCGGCCACCCCCCCCTCCCCCCACAC
CAGGCGCCCCCTCGCGACGATAATTAAGATCAAGGCAAGAACCAAAATAT
AACTCCGATGCCTGTTTTTGGCGATAGAAACAGCAGGGGAAAAGATGCAG
TGTGTGTACATAGAATCGAAAATAAATAAAATCATGGCAAGTTTCAGGGT
TGGCACACTTGCATGTGAGTAGATAGCCTTTGAGTTGGATGTGCCGAAGA
CTAGGAAGGGAAAGCAGCTCGTACAGCGTCGGGGATGAAACCGAAAATGA
AAGTATACAGATAAATACTGAAAATTT back to topprotein sequence of NO04G01580.2 >NO04G01580.2-protein ID=NO04G01580.2-protein|Name=NO04G01580.2|organism=Nannochloropsis oceanica|type=polypeptide|length=433bp
MGERGMQIKADLNKEGWESSDFPLVCETCLGDNPYVRMTKEAAGKACKIC
DRPFTIFRWRPGAKARFKKTEVCQTCAKMKNVCQTCVLDLTYGLPVQVRD
AVLAEAAASGEGGAAPLALTVPQSDTNKQWFAGQHDRMVAEGHADSYGKA
QINEKLMRLSRAQPYYKRNLPHKCTFYAKGECTRGDRCPFLHEMPTSRND
PLANQNIKDRFYGQDDPVAQKMLGRVAAKDAEDLAPLIPPSDPSIMTLMV
GGMEGGSITEMELRDAFYAFGELASVRLIHAKFIAFVEYTTREAAEAAAK
ALHNNLTLQGLRLRVTWATRPAGGALANSSTSSGSFAMYGGGGGGGSVSA
AAAAGGGAGGGDGSMPSPPSTFPPLPPPQYMPALPPSNWTPGTIPPPPPG
GPPPMRHPPQQYMQQGGALSLPPPQQVDLKYR* back to topmRNA from alignment at chr4:478218..480624- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO04G01580.2 ID=NO04G01580.2|Name=NO04G01580.2|organism=Nannochloropsis oceanica|type=mRNA|length=2407bp|location=Sequence derived from alignment at chr4:478218..480624- (Nannochloropsis oceanica)
ACAGTCCGTGCAACCATGGGGGAACGGGGCATGCAGATTAAGGCGGACCT
AAACAAGGAAGGTTGGGAATCGAGCGACTTCCCCTTGGTCTGTGAGACGT
GTCTGGGGGACAACCCTTACGTGCGTATGACCAAGGAAGCAGCCGGCAAG
GCGTGCAAGATTTGTGACCGGCCCTTCACTATCTTTAGGTGGCGTCCCGG
CGCCAAGGCCCGCTTTAAGAAGACCGAGGTGTGTCAGACGTGCGCAAAGA
TGAAGAACGTGTGCCAAACCTGCGTCCTGGATCTGACCTATGGCCTACCC
GTGCAAGTCCGCGACGCCGTCTTGGCGGAAGCTGCGGCGTCGGGGGAGGG
TGGCGCGGCGCCGTTGGCTTTGACCGTTCCACAGAGCGATACCAATAAGC
AATGGTTTGCGGGACAGCATGATAGAATGGTGGCGGAGGGCCACGCGGAT
TCGTATGGCAAGGCGCAGATCAATGAGAAGCTGATGCGGTTGTCTCGGGC
TCAGCCTTACTACAAGCGGAATCTGCCACATAAGTGCACGTTTTATGCCA
AGGGGGAGTGTACGCGTGGGGACCGATGTCCGTTTTTGTAAGTGGATGTA
TTGGGAGGTAAAAGGGGGAGAGTGCGATATTGTGCGTGATGGGCCGGAGC
CTGGTGGAGAGGGATGGAGGATTATTTGTCGGTTTGTGCCTACCCCTCGC
GCTCGTGTATATCCCCTTTCTTTTGTGCTTCTCAACATACCTGCACCTTA
GACATGCAAGTTGGCCATGATTATAAATTTTTATCATTTGGCGCGGGGCC
GGGGACTTCTTTCGGCTTGAGTCACAGCCTTGTCGCCGAGGCTGGCGATT
CGCTGGGTGACCTTCTCCTTCGTGTGCCCGGCGCTCCGCATGGGGACTTT
TGGTCCTCGCTGGGGAATGTTATGCGACCATACTCTCTGAGCCTTTTAGA
GCATACTCTCGTTTCCTCTTCATGTATTCTTCGTTTCCTGGTGTGGCTCC
TCATGAAATTCTCACCTCCCTTCCCCTTCCTTCCCTCCCCCTCCTTCCTT
CCCTTTTCCCCAAATAGGCACGAAATGCCCACCTCTCGAAATGACCCCCT
TGCCAACCAAAATATCAAAGACCGTTTCTACGGGCAAGATGATCCAGTGG
CTCAAAAGATGCTTGGCCGCGTGGCGGCAAAGGATGCGGAAGACCTCGCT
CCTCTGATCCCTCCCTCCGACCCCAGCATTATGACGCTCATGGTGGGAGG
GATGGAGGGTGGGTCCATCACGGAGATGGAATTGCGGGATGCGTTCTATG
CGTTTGGGGAGCTGGCGAGTGTGAGGTTGATCCATGCTAAATTTATCGCG
TTCGTGGAGTATACGACAAGGGAAGCAGCAGAAGCAGCAGCCAAGGCCCT
CCACAACAACCTCACTTTGCAGGGACTCCGCCTTCGAGTCACCTGGGCGA
CGCGGCCCGCGGGTGGAGCGCTTGCCAACTCTAGCACCAGCAGCGGCAGT
TTTGCCATGTATGGTGGTGGTGGGGGTGGGGGTAGCGTTTCTGCTGCTGC
TGCTGCTGGTGGTGGTGCCGGTGGTGGTGATGGTAGCATGCCTTCTCCTC
CGAGCACCTTCCCCCCTCTCCCCCCTCCTCAATATATGCCTGCCCTACCC
CCTTCCAACTGGACACCAGGCACCATTCCTCCGCCCCCTCCCGGCGGTCC
TCCTCCCATGCGCCATCCCCCTCAACAGTACATGCAGCAGGGAGGGGCCC
TCTCCCTTCCTCCTCCTCAGCAGGTAGATTTGAAGTACAGATAGGAGAGA
TCACATAGGAGAGATCACATAGGAGAGAGGAGGGGAATATTTCCATGAGG
ATATGATGATTTACAACCAGCTACTCTGAATCGAGCTCTTAGTCGGCTTA
ACAACACCGTGTAGTCAATTCAAGATATTTCTAACTACTAGATGGGCTGA
TCCTCACACAGACACGCACTTTCCCACACTCGACTCCCTTTCCTCTCCAC
ACCAGCTAGACTGAATCTTTCACTCACTCACTCATTATTCACCTACTCAC
TCACTCCATCCCACAGCCCTACTACCCTTCCATGGACCCTCAGCGCATGG
GAGCTCGGCCACCCCCCCCTCCCCCCACACCAGGCGCCCCCTCGCGACGA
TAATTAAGATCAAGGCAAGAACCAAAATATAACTCCGATGCCTGTTTTTG
GCGATAGAAACAGCAGGGGAAAAGATGCAGTGTGTGTACATAGAATCGAA
AATAAATAAAATCATGGCAAGTTTCAGGGTTGGCACACTTGCATGTGAGT
AGATAGCCTTTGAGTTGGATGTGCCGAAGACTAGGAAGGGAAAGCAGCTC
GTACAGCGTCGGGGATGAAACCGAAAATGAAAGTATACAGATAAATACTG
AAAATTT back to topCoding sequence (CDS) from alignment at chr4:478218..480624- >NO04G01580.2 ID=NO04G01580.2|Name=NO04G01580.2|organism=Nannochloropsis oceanica|type=CDS|length=1299bp|location=Sequence derived from alignment at chr4:478218..480624- (Nannochloropsis oceanica)
ATGGGGGAACGGGGCATGCAGATTAAGGCGGACCTAAACAAGGAAGGTTG
GGAATCGAGCGACTTCCCCTTGGTCTGTGAGACGTGTCTGGGGGACAACC
CTTACGTGCGTATGACCAAGGAAGCAGCCGGCAAGGCGTGCAAGATTTGT
GACCGGCCCTTCACTATCTTTAGGTGGCGTCCCGGCGCCAAGGCCCGCTT
TAAGAAGACCGAGGTGTGTCAGACGTGCGCAAAGATGAAGAACGTGTGCC
AAACCTGCGTCCTGGATCTGACCTATGGCCTACCCGTGCAAGTCCGCGAC
GCCGTCTTGGCGGAAGCTGCGGCGTCGGGGGAGGGTGGCGCGGCGCCGTT
GGCTTTGACCGTTCCACAGAGCGATACCAATAAGCAATGGTTTGCGGGAC
AGCATGATAGAATGGTGGCGGAGGGCCACGCGGATTCGTATGGCAAGGCG
CAGATCAATGAGAAGCTGATGCGGTTGTCTCGGGCTCAGCCTTACTACAA
GCGGAATCTGCCACATAAGTGCACGTTTTATGCCAAGGGGGAGTGTACGC
GTGGGGACCGATGTCCGTTTTTGCACGAAATGCCCACCTCTCGAAATGAC
CCCCTTGCCAACCAAAATATCAAAGACCGTTTCTACGGGCAAGATGATCC
AGTGGCTCAAAAGATGCTTGGCCGCGTGGCGGCAAAGGATGCGGAAGACC
TCGCTCCTCTGATCCCTCCCTCCGACCCCAGCATTATGACGCTCATGGTG
GGAGGGATGGAGGGTGGGTCCATCACGGAGATGGAATTGCGGGATGCGTT
CTATGCGTTTGGGGAGCTGGCGAGTGTGAGGTTGATCCATGCTAAATTTA
TCGCGTTCGTGGAGTATACGACAAGGGAAGCAGCAGAAGCAGCAGCCAAG
GCCCTCCACAACAACCTCACTTTGCAGGGACTCCGCCTTCGAGTCACCTG
GGCGACGCGGCCCGCGGGTGGAGCGCTTGCCAACTCTAGCACCAGCAGCG
GCAGTTTTGCCATGTATGGTGGTGGTGGGGGTGGGGGTAGCGTTTCTGCT
GCTGCTGCTGCTGGTGGTGGTGCCGGTGGTGGTGATGGTAGCATGCCTTC
TCCTCCGAGCACCTTCCCCCCTCTCCCCCCTCCTCAATATATGCCTGCCC
TACCCCCTTCCAACTGGACACCAGGCACCATTCCTCCGCCCCCTCCCGGC
GGTCCTCCTCCCATGCGCCATCCCCCTCAACAGTACATGCAGCAGGGAGG
GGCCCTCTCCCTTCCTCCTCCTCAGCAGGTAGATTTGAAGTACAGATAG back to top
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