NO04G01570.1, NO04G01570.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO04G01570.1
Unique NameNO04G01570.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1275
Alignment locationchr4:476743..478017 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:476743..478017 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO04G01570.1 vs.
Match: XP_005854873.1 (hypothetical protein NGA_0377400 [Nannochloropsis gaditana CCMP526]; EKU21481.1 hypothetical protein NGA_0377400 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 471.5 bits (1212), Expect = 2.800e-129
Identity = 240/426 (56.34%), Postives = 302/426 (70.89%), Query Frame = 0 
Query:    1 MTRHILMCLAGSLLHATITSQA--TPLPAAGGVPVETLAQLGQLIEATLASPTPAGEDSRGVLRTLAVSESQEYCDTYLTLALGGLLTECATLARDLQSLTGTTSECKRVYDFSKPKLDSLCSNKCYSVMVDALDNMAKAGCAPDGLIKTMCDQCPEDTVCVKGVCRPKCSSNHPCACDDECVDGSCRPSDQVGVQQTEMGTFGYKISLEVMCLKPPPVKPIAAKAGTSDNAVPAVSKDAQALQLVDNAAPAVEQDYCFTSMFGALEKLTPDVCDKIEATGCCAGTVLQYGLKCALANDSISVNDSAPMQLTNLIKFCPNVDFQAECANTPVYAAGQCKLGYTDGPGVELPFPSLASFARSSFDLVGVYALGGGIAFMCMLLLVVTVVTRRGNLRKQAEADKAAEAMKSNLSTPLGSPVASPIDSI 425
            M +  L    G L  AT ++ A  +   A G VP +TLA LGQL  A++A      +     +       SQ+ C++++TL LG L TECA LARDLQ++  T+++CKRVYDFSKPKLD +CSNKCY  MV ALD MAKAGC+ DG+ K MCDQC E T CV+GVCRP CS+  PCAC+DECV+GSC+ SDQ G+Q+T+MGTFGYKISLE +CLK P   P        D   P  S  A+  Q+        ++DYCF+S+F ALE LTPDVCDK+ ATGCCAGTV+QYG+ C LAND++ +N  APMQLT L  FCP+VDF+ +C+N P YA G CK+GY DGPG ELPFPSLASFAR SFD+ G+YAL GGI+FMC+LLL V+++ +RG++R QAEA  AA+A K+N+S+P  SPVASPID I
Sbjct:    1 MAQKTLFYATGILFWATSSTAALNSMASAGGAVPAQTLALLGQLTLASVALSATTED-----VHAQMAPASQDDCNSFMTLLLGPLTTECAELARDLQTVATTSTDCKRVYDFSKPKLDGMCSNKCYPTMVRALDGMAKAGCSADGVTKMMCDQCEEGTACVEGVCRPLCSATKPCACNDECVNGSCQSSDQGGLQRTDMGTFGYKISLEHLCLKAPLALP--------DTDAPDASTAAKEQQMA-----LAKEDYCFSSVFNALEGLTPDVCDKLAATGCCAGTVMQYGVTCGLANDTVKLNGGAPMQLTALANFCPDVDFKTKCSNAPAYADGMCKVGYVDGPGTELPFPSLASFARGSFDMAGLYALAGGISFMCLLLLTVSILQKRGHVRGQAEAADAADAGKTNVSSPAVSPVASPIDKI 408
The following BLAST results are available for this feature:
BLAST of NO04G01570.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005854873.12.800e-12956.34hypothetical protein NGA_0377400 [Nannochloropsis ... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO04G01570NO04G01570Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO04G01570.1NO04G01570.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO04G01570.1.cds1NO04G01570.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO04G01570.1 ID=NO04G01570.1|Name=NO04G01570.1|organism=Nannochloropsis oceanica|type=mRNA|length=1275bp
ATGACACGACACATACTTATGTGCCTGGCCGGCAGCCTGCTCCATGCTAC
CATCACGTCCCAGGCCACCCCCCTCCCCGCCGCGGGAGGCGTTCCTGTGG
AGACCTTGGCCCAGCTGGGACAATTGATAGAAGCCACCTTGGCATCTCCG
ACCCCTGCTGGAGAAGATTCCAGAGGAGTCCTTCGCACTCTTGCAGTATC
TGAATCCCAGGAATACTGCGATACGTACCTGACGCTGGCCTTGGGAGGTT
TGTTGACCGAGTGCGCGACTTTGGCAAGGGACTTACAGTCACTGACCGGC
ACTACATCCGAGTGCAAGCGTGTGTACGATTTTTCCAAGCCTAAGTTGGA
CAGCTTATGCTCCAACAAGTGCTATTCAGTCATGGTAGATGCTTTGGACA
ATATGGCCAAGGCGGGATGTGCACCCGATGGGCTCATCAAGACCATGTGC
GACCAATGCCCTGAGGATACAGTCTGCGTCAAGGGTGTCTGCCGTCCCAA
ATGCTCCTCCAATCATCCATGCGCCTGCGACGATGAGTGTGTGGATGGCA
GTTGTAGGCCTTCGGATCAGGTCGGCGTACAGCAGACGGAGATGGGGACC
TTCGGGTACAAGATTTCGCTGGAGGTCATGTGTCTCAAACCCCCTCCTGT
GAAGCCTATTGCTGCCAAAGCTGGCACGAGTGATAATGCTGTCCCGGCAG
TCTCGAAGGATGCCCAGGCATTGCAATTGGTTGACAATGCAGCGCCGGCG
GTGGAGCAAGATTATTGTTTTACGAGCATGTTTGGGGCTTTGGAGAAGTT
GACCCCCGACGTGTGCGACAAGATCGAGGCCACAGGATGCTGCGCGGGCA
CAGTGCTGCAATACGGACTGAAATGTGCTTTGGCCAACGACTCCATAAGT
GTGAATGACAGTGCACCTATGCAGTTGACAAATTTAATCAAGTTTTGCCC
GAACGTCGATTTTCAGGCTGAATGTGCGAATACTCCCGTGTATGCCGCGG
GTCAATGCAAATTGGGGTACACAGATGGACCAGGCGTGGAGCTACCTTTC
CCCAGCCTAGCCAGTTTTGCCCGTTCAAGCTTTGATTTGGTGGGGGTGTA
TGCATTGGGCGGGGGGATTGCTTTCATGTGCATGCTTTTGCTGGTGGTGA
CCGTGGTAACGAGGCGCGGGAATCTTCGCAAGCAGGCCGAGGCGGACAAG
GCCGCTGAGGCGATGAAGTCAAATCTGTCGACGCCCCTGGGGTCGCCCGT
GGCCTCACCCATCGACAGTATTTAA
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protein sequence of NO04G01570.1

>NO04G01570.1-protein ID=NO04G01570.1-protein|Name=NO04G01570.1|organism=Nannochloropsis oceanica|type=polypeptide|length=425bp
MTRHILMCLAGSLLHATITSQATPLPAAGGVPVETLAQLGQLIEATLASP
TPAGEDSRGVLRTLAVSESQEYCDTYLTLALGGLLTECATLARDLQSLTG
TTSECKRVYDFSKPKLDSLCSNKCYSVMVDALDNMAKAGCAPDGLIKTMC
DQCPEDTVCVKGVCRPKCSSNHPCACDDECVDGSCRPSDQVGVQQTEMGT
FGYKISLEVMCLKPPPVKPIAAKAGTSDNAVPAVSKDAQALQLVDNAAPA
VEQDYCFTSMFGALEKLTPDVCDKIEATGCCAGTVLQYGLKCALANDSIS
VNDSAPMQLTNLIKFCPNVDFQAECANTPVYAAGQCKLGYTDGPGVELPF
PSLASFARSSFDLVGVYALGGGIAFMCMLLLVVTVVTRRGNLRKQAEADK
AAEAMKSNLSTPLGSPVASPIDSI*
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mRNA from alignment at chr4:476743..478017+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO04G01570.1 ID=NO04G01570.1|Name=NO04G01570.1|organism=Nannochloropsis oceanica|type=mRNA|length=1275bp|location=Sequence derived from alignment at chr4:476743..478017+ (Nannochloropsis oceanica)
ATGACACGACACATACTTATGTGCCTGGCCGGCAGCCTGCTCCATGCTAC
CATCACGTCCCAGGCCACCCCCCTCCCCGCCGCGGGAGGCGTTCCTGTGG
AGACCTTGGCCCAGCTGGGACAATTGATAGAAGCCACCTTGGCATCTCCG
ACCCCTGCTGGAGAAGATTCCAGAGGAGTCCTTCGCACTCTTGCAGTATC
TGAATCCCAGGAATACTGCGATACGTACCTGACGCTGGCCTTGGGAGGTT
TGTTGACCGAGTGCGCGACTTTGGCAAGGGACTTACAGTCACTGACCGGC
ACTACATCCGAGTGCAAGCGTGTGTACGATTTTTCCAAGCCTAAGTTGGA
CAGCTTATGCTCCAACAAGTGCTATTCAGTCATGGTAGATGCTTTGGACA
ATATGGCCAAGGCGGGATGTGCACCCGATGGGCTCATCAAGACCATGTGC
GACCAATGCCCTGAGGATACAGTCTGCGTCAAGGGTGTCTGCCGTCCCAA
ATGCTCCTCCAATCATCCATGCGCCTGCGACGATGAGTGTGTGGATGGCA
GTTGTAGGCCTTCGGATCAGGTCGGCGTACAGCAGACGGAGATGGGGACC
TTCGGGTACAAGATTTCGCTGGAGGTCATGTGTCTCAAACCCCCTCCTGT
GAAGCCTATTGCTGCCAAAGCTGGCACGAGTGATAATGCTGTCCCGGCAG
TCTCGAAGGATGCCCAGGCATTGCAATTGGTTGACAATGCAGCGCCGGCG
GTGGAGCAAGATTATTGTTTTACGAGCATGTTTGGGGCTTTGGAGAAGTT
GACCCCCGACGTGTGCGACAAGATCGAGGCCACAGGATGCTGCGCGGGCA
CAGTGCTGCAATACGGACTGAAATGTGCTTTGGCCAACGACTCCATAAGT
GTGAATGACAGTGCACCTATGCAGTTGACAAATTTAATCAAGTTTTGCCC
GAACGTCGATTTTCAGGCTGAATGTGCGAATACTCCCGTGTATGCCGCGG
GTCAATGCAAATTGGGGTACACAGATGGACCAGGCGTGGAGCTACCTTTC
CCCAGCCTAGCCAGTTTTGCCCGTTCAAGCTTTGATTTGGTGGGGGTGTA
TGCATTGGGCGGGGGGATTGCTTTCATGTGCATGCTTTTGCTGGTGGTGA
CCGTGGTAACGAGGCGCGGGAATCTTCGCAAGCAGGCCGAGGCGGACAAG
GCCGCTGAGGCGATGAAGTCAAATCTGTCGACGCCCCTGGGGTCGCCCGT
GGCCTCACCCATCGACAGTATTTAA
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Coding sequence (CDS) from alignment at chr4:476743..478017+

>NO04G01570.1 ID=NO04G01570.1|Name=NO04G01570.1|organism=Nannochloropsis oceanica|type=CDS|length=1275bp|location=Sequence derived from alignment at chr4:476743..478017+ (Nannochloropsis oceanica)
ATGACACGACACATACTTATGTGCCTGGCCGGCAGCCTGCTCCATGCTAC
CATCACGTCCCAGGCCACCCCCCTCCCCGCCGCGGGAGGCGTTCCTGTGG
AGACCTTGGCCCAGCTGGGACAATTGATAGAAGCCACCTTGGCATCTCCG
ACCCCTGCTGGAGAAGATTCCAGAGGAGTCCTTCGCACTCTTGCAGTATC
TGAATCCCAGGAATACTGCGATACGTACCTGACGCTGGCCTTGGGAGGTT
TGTTGACCGAGTGCGCGACTTTGGCAAGGGACTTACAGTCACTGACCGGC
ACTACATCCGAGTGCAAGCGTGTGTACGATTTTTCCAAGCCTAAGTTGGA
CAGCTTATGCTCCAACAAGTGCTATTCAGTCATGGTAGATGCTTTGGACA
ATATGGCCAAGGCGGGATGTGCACCCGATGGGCTCATCAAGACCATGTGC
GACCAATGCCCTGAGGATACAGTCTGCGTCAAGGGTGTCTGCCGTCCCAA
ATGCTCCTCCAATCATCCATGCGCCTGCGACGATGAGTGTGTGGATGGCA
GTTGTAGGCCTTCGGATCAGGTCGGCGTACAGCAGACGGAGATGGGGACC
TTCGGGTACAAGATTTCGCTGGAGGTCATGTGTCTCAAACCCCCTCCTGT
GAAGCCTATTGCTGCCAAAGCTGGCACGAGTGATAATGCTGTCCCGGCAG
TCTCGAAGGATGCCCAGGCATTGCAATTGGTTGACAATGCAGCGCCGGCG
GTGGAGCAAGATTATTGTTTTACGAGCATGTTTGGGGCTTTGGAGAAGTT
GACCCCCGACGTGTGCGACAAGATCGAGGCCACAGGATGCTGCGCGGGCA
CAGTGCTGCAATACGGACTGAAATGTGCTTTGGCCAACGACTCCATAAGT
GTGAATGACAGTGCACCTATGCAGTTGACAAATTTAATCAAGTTTTGCCC
GAACGTCGATTTTCAGGCTGAATGTGCGAATACTCCCGTGTATGCCGCGG
GTCAATGCAAATTGGGGTACACAGATGGACCAGGCGTGGAGCTACCTTTC
CCCAGCCTAGCCAGTTTTGCCCGTTCAAGCTTTGATTTGGTGGGGGTGTA
TGCATTGGGCGGGGGGATTGCTTTCATGTGCATGCTTTTGCTGGTGGTGA
CCGTGGTAACGAGGCGCGGGAATCTTCGCAAGCAGGCCGAGGCGGACAAG
GCCGCTGAGGCGATGAAGTCAAATCTGTCGACGCCCCTGGGGTCGCCCGT
GGCCTCACCCATCGACAGTATTTAA
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Synonyms
Publications