NO04G01550.1, NO04G01550.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO04G01550.1
Unique NameNO04G01550.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length798
Alignment locationchr4:473524..474663 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:473524..474663 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO04G01550.1 vs.
Match: XP_005854871.1 (hypothetical protein NGA_0377200 [Nannochloropsis gaditana CCMP526]; EKU21479.1 hypothetical protein NGA_0377200 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 337.0 bits (863), Expect = 5.200e-89
Identity = 177/232 (76.29%), Postives = 191/232 (82.33%), Query Frame = 0 
Query:   36 AMTVDSFVVLPISQRTGS--LARVCGQGRSATREGGEVDRKALLREAVKKAGLVAGGWGVAAAGLPQLVGAKKIINLEEARELGEKKMIEIEKAKGPLIKVRDNVKYREELVGKGPTFEKGDLVKIRYQVYKGNGDYMFSTGYGREFQDDVGDTYDFTFGRPNSIPKGAEIGMEGMRVGGKRKISVPPELGWKTSGGFPEPQTFGGKRKLLNHQNEFLQFEVEVIRSRPRKT 266
            A  V  F V P   R  S  + R C +   +   G +VDR     +A+K AG+VA   G+A  GLP LV AKKIINLEEARELGEKKMI+IEKAKGPLIKVRDNVKYREEL+GKG  F+ GDLVKIRYQVYKGNGDYMFSTGYGREFQ+DVGDTYDFTFGRPNSIPKGAEIGMEGMRVGGKRKISVPPELGW+TSGGFPEPQTFGGKRKLLNH NEFLQFEVEVIR RP+KT
Sbjct:   33 ASNVLCFRVKPCIARDTSRDVRRACRRPTPSRGGGEDVDRM----DALKTAGMVATAGGLAIGGLPNLVEAKKIINLEEARELGEKKMIDIEKAKGPLIKVRDNVKYREELIGKGDIFKAGDLVKIRYQVYKGNGDYMFSTGYGREFQNDVGDTYDFTFGRPNSIPKGAEIGMEGMRVGGKRKISVPPELGWQTSGGFPEPQTFGGKRKLLNHMNEFLQFEVEVIRVRPKKT 260
The following BLAST results are available for this feature:
BLAST of NO04G01550.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005854871.15.200e-8976.29hypothetical protein NGA_0377200 [Nannochloropsis ... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO04G01550NO04G01550Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO04G01550.1NO04G01550.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO04G01550.1.cds1NO04G01550.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G01550.1.cds2NO04G01550.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G01550.1.cds3NO04G01550.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO04G01550.1 ID=NO04G01550.1|Name=NO04G01550.1|organism=Nannochloropsis oceanica|type=mRNA|length=798bp
ATGAAGCTATCATCATGCGCTGGCATCAGCAACCGCGAGTCAAGGCGAGT
CTCCTCGGCACTGCTTTTGGCGCCTCTACTGGTTCTACATAACCTGCTTG
CGTTGGCAATGACCGTGGATAGTTTTGTTGTCCTACCAATAAGCCAGAGA
ACGGGATCGCTAGCTCGCGTTTGTGGACAAGGCCGGTCCGCCACACGAGA
GGGAGGGGAGGTCGATCGGAAGGCGCTGCTGCGGGAGGCCGTCAAAAAGG
CAGGGCTGGTGGCTGGTGGCTGGGGAGTGGCTGCAGCGGGATTGCCACAG
CTGGTGGGAGCTAAGAAGATTATCAACTTGGAGGAGGCGCGAGAGCTGGG
CGAGAAGAAGATGATCGAGATAGAGAAGGCAAAGGGACCGCTCATCAAGG
TACGAGACAACGTAAAGTACCGCGAAGAGCTTGTCGGCAAAGGGCCTACC
TTTGAAAAAGGCGACCTCGTCAAGATTCGCTACCAGGTCTACAAGGGTAA
TGGGGACTACATGTTTTCCACGGGCTATGGGCGAGAATTCCAGGATGATG
TGGGAGATACGTATGACTTCACGTTCGGCCGTCCCAATTCCATCCCCAAG
GGGGCAGAGATCGGTATGGAAGGCATGCGTGTGGGGGGGAAACGCAAGAT
TTCTGTTCCGCCCGAGCTGGGGTGGAAGACCTCAGGGGGTTTTCCGGAAC
CGCAAACGTTTGGAGGAAAGAGGAAATTGTTGAACCACCAGAACGAGTTT
CTGCAGTTTGAAGTGGAAGTAATTAGGTCCCGGCCGCGGAAGACATAA
back to top

protein sequence of NO04G01550.1

>NO04G01550.1-protein ID=NO04G01550.1-protein|Name=NO04G01550.1|organism=Nannochloropsis oceanica|type=polypeptide|length=266bp
MKLSSCAGISNRESRRVSSALLLAPLLVLHNLLALAMTVDSFVVLPISQR
TGSLARVCGQGRSATREGGEVDRKALLREAVKKAGLVAGGWGVAAAGLPQ
LVGAKKIINLEEARELGEKKMIEIEKAKGPLIKVRDNVKYREELVGKGPT
FEKGDLVKIRYQVYKGNGDYMFSTGYGREFQDDVGDTYDFTFGRPNSIPK
GAEIGMEGMRVGGKRKISVPPELGWKTSGGFPEPQTFGGKRKLLNHQNEF
LQFEVEVIRSRPRKT*
back to top

mRNA from alignment at chr4:473524..474663+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO04G01550.1 ID=NO04G01550.1|Name=NO04G01550.1|organism=Nannochloropsis oceanica|type=mRNA|length=1140bp|location=Sequence derived from alignment at chr4:473524..474663+ (Nannochloropsis oceanica)
ATGAAGCTATCATCATGCGCTGGCATCAGCAACCGCGAGTCAAGGCGAGT
CTCCTCGGCACTGCTTTTGGCGCCTCTACTGGTTCTACATAACCTGCTTG
CGTTGGCAATGACCGTGGATAGTTTTGTTGTCCTACCAATAAGCCAGAGA
ACGGGATCGCTAGCTCGCGTTTGTGGACAAGGCCGGTCCGCCACACGAGA
GGGAGGGGAGGTCGATCGGAAGGCGCTGCTGCGGGAGGCCGTCAAAAAGG
CAGGGCTGGTGGCTGGTGGCTGGGGAGTGGCTGCAGCGGGATTGCCACAG
CTGGTGGGAGCTAAGAAGATTATCAACTTGGAGGAGGCGCGAGAGCTGGG
CGAGAAGAAGATGATCGAGATAGAGAAGGCAAAGGGACCGCTCATCAAGG
TGCGTGGTAGGGGAGGGGAGGTGGGCATGTGGAGTGTTTGGCGTAACTAT
TGCTCAAATGACAGCATAGCATGGTATTGTTGTTGTTCTGATGTCTCTGT
CTACTCATCATGCGTTTCCTCGCCCAACAACACACTCAACAAAGGTACGA
GACAACGTAAAGTACCGCGAAGAGCTTGTCGGCAAAGGGCCTACCTTTGA
AAAAGGCGACCTCGTCAAGATTCGCTACCAGGTCTACAAGGGTAATGGGG
ACTACATGTTTTCCACGGGCTATGGGCGAGAATTCCAGGATGATGTGGGA
GGTGAGGGAGGGGGCCAGGGGACGGGGGGGACGGGGGTCGTATGGGCTCG
TGAGATAGCAAGCGTAGGATGAAATGCTGCGAAAGGCAACAACAATAGCG
CGGCAGTCATTTCCTACATGCACTCACAAGTCTTCATCTCCTTCCCTTCT
CCGCTCCCTCCCTCCCTTCCTTCCTACCTCCCTCCGCTCATTCCTCAGAT
ACGTATGACTTCACGTTCGGCCGTCCCAATTCCATCCCCAAGGGGGCAGA
GATCGGTATGGAAGGCATGCGTGTGGGGGGGAAACGCAAGATTTCTGTTC
CGCCCGAGCTGGGGTGGAAGACCTCAGGGGGTTTTCCGGAACCGCAAACG
TTTGGAGGAAAGAGGAAATTGTTGAACCACCAGAACGAGTTTCTGCAGTT
TGAAGTGGAAGTAATTAGGTCCCGGCCGCGGAAGACATAA
back to top

Coding sequence (CDS) from alignment at chr4:473524..474663+

>NO04G01550.1 ID=NO04G01550.1|Name=NO04G01550.1|organism=Nannochloropsis oceanica|type=CDS|length=798bp|location=Sequence derived from alignment at chr4:473524..474663+ (Nannochloropsis oceanica)
ATGAAGCTATCATCATGCGCTGGCATCAGCAACCGCGAGTCAAGGCGAGT
CTCCTCGGCACTGCTTTTGGCGCCTCTACTGGTTCTACATAACCTGCTTG
CGTTGGCAATGACCGTGGATAGTTTTGTTGTCCTACCAATAAGCCAGAGA
ACGGGATCGCTAGCTCGCGTTTGTGGACAAGGCCGGTCCGCCACACGAGA
GGGAGGGGAGGTCGATCGGAAGGCGCTGCTGCGGGAGGCCGTCAAAAAGG
CAGGGCTGGTGGCTGGTGGCTGGGGAGTGGCTGCAGCGGGATTGCCACAG
CTGGTGGGAGCTAAGAAGATTATCAACTTGGAGGAGGCGCGAGAGCTGGG
CGAGAAGAAGATGATCGAGATAGAGAAGGCAAAGGGACCGCTCATCAAGG
TACGAGACAACGTAAAGTACCGCGAAGAGCTTGTCGGCAAAGGGCCTACC
TTTGAAAAAGGCGACCTCGTCAAGATTCGCTACCAGGTCTACAAGGGTAA
TGGGGACTACATGTTTTCCACGGGCTATGGGCGAGAATTCCAGGATGATG
TGGGAGATACGTATGACTTCACGTTCGGCCGTCCCAATTCCATCCCCAAG
GGGGCAGAGATCGGTATGGAAGGCATGCGTGTGGGGGGGAAACGCAAGAT
TTCTGTTCCGCCCGAGCTGGGGTGGAAGACCTCAGGGGGTTTTCCGGAAC
CGCAAACGTTTGGAGGAAAGAGGAAATTGTTGAACCACCAGAACGAGTTT
CTGCAGTTTGAAGTGGAAGTAATTAGGTCCCGGCCGCGGAAGACATAA
back to top
Synonyms
Publications