NO04G01520.1, NO04G01520.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO04G01520.1
Unique NameNO04G01520.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1202
Alignment locationchr4:469889..471090 -

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:469889..471090 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO04G01520.1 vs.
Match: EWM28531.1 (gcn5-related n-acetyltransferase [Nannochloropsis gaditana])

HSP 1 Score: 359.0 bits (920), Expect = 1.500e-95
Identity = 202/300 (67.33%), Postives = 236/300 (78.67%), Query Frame = 0 
Query:    6 TIALLLVVATTL--LAVSAFVPALSKSTTTTRLSSCSRPLSSRPLSSSSRSRTNTALQSISLDSFFGRRTQNSAGSSGDMTSATAPITIMEVQRQDLRIIASVCIESFFGTADRLNPIRSMQLATLLDEQLTDLRSRFGGRAVGGSVFLQAVDADGQIQGVVEIGVTQSMKWGFEQYGVPVRDERPYLANLSVRPGARRQGIGRALVQACEEIVQNSWGFDELILQVEDTNQQARKLYRDLGYVDLYTDATGRKYELSGMSIKNVRINKVTLRKPLTPSTSAVKNPLNSLAAMWAQLSLS 304
            +I L +++AT +   A+SAF+P+   S            +SS   +++ RSR+NTA  SISLDSFFGRR   S  ++     AT+ I I EV RQDLR+ ASVCIESFFGTADRLNP+RSMQLATLLDEQ  DLRSRFGGRAVGGS++LQAVDADG + G VE+G+TQS+K+G EQYGVPVRDERPYLANLSVRP  RRQG+GR LV ACEE+V+ SWG+DELILQVED+NQQAR LYRD+GY+DLYTDATGRKYELSGMSIKNVRINKVTLRK L P  SA KNP    AA+W QLS+S
Sbjct:    8 SIGLFMILATFMPTAALSAFIPSSPTS------------ISSIATTTTLRSRSNTARPSISLDSFFGRRPPRSTTTTVPSPPATS-IIISEVSRQDLRLAASVCIESFFGTADRLNPVRSMQLATLLDEQCADLRSRFGGRAVGGSLYLQAVDADGAMVGFVEVGITQSLKYGMEQYGVPVRDERPYLANLSVRPALRRQGVGRRLVHACEEMVR-SWGYDELILQVEDSNQQARNLYRDMGYIDLYTDATGRKYELSGMSIKNVRINKVTLRKALVP--SAAKNP---FAALWGQLSIS 288
The following BLAST results are available for this feature:
BLAST of NO04G01520.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28531.11.500e-9567.33gcn5-related n-acetyltransferase [Nannochloropsis ... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO04G01520NO04G01520Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO04G01520.1NO04G01520.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO04G01520.1.cds1NO04G01520.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO04G01520.1 ID=NO04G01520.1|Name=NO04G01520.1|organism=Nannochloropsis oceanica|type=mRNA|length=1202bp
ACAGCCCCATACAGCCACCATGCGTCAAACATGCACAATAGCGCTGCTCC
TGGTGGTGGCCACGACCCTGCTGGCTGTATCTGCATTCGTCCCCGCACTG
TCAAAGTCCACCACTACCACACGCCTCAGTTCCTGCAGCAGACCTCTGAG
CAGCAGACCTCTGAGCAGCAGCAGCAGATCACGCACCAACACCGCCCTGC
AAAGTATCAGCCTGGACTCGTTCTTCGGGAGGCGCACACAAAATTCCGCC
GGTAGCAGCGGCGACATGACCAGCGCGACCGCGCCCATCACCATCATGGA
AGTCCAACGGCAAGACCTGCGGATTATTGCATCTGTGTGTATTGAAAGTT
TTTTTGGGACGGCCGATAGGCTCAACCCCATCCGTTCCATGCAACTAGCC
ACGTTATTGGACGAGCAATTAACTGACTTGCGCTCCCGCTTTGGTGGGCG
TGCGGTGGGGGGCTCCGTTTTTTTGCAAGCCGTGGATGCGGACGGACAGA
TTCAAGGAGTGGTGGAAATTGGGGTGACTCAATCGATGAAGTGGGGCTTT
GAACAGTACGGGGTGCCTGTGCGTGATGAGCGACCTTATCTCGCTAATCT
ATCAGTGCGGCCTGGGGCGCGAAGGCAAGGGATAGGTCGCGCCTTGGTGC
AAGCATGTGAGGAGATTGTCCAGAATTCATGGGGCTTCGACGAGTTAATT
TTGCAAGTAGAAGACACGAACCAACAAGCCCGCAAGCTTTATCGTGATCT
TGGCTACGTTGATTTGTACACGGATGCAACTGGCCGTAAGTACGAGTTGA
GTGGAATGAGCATTAAGAATGTGCGAATCAATAAAGTCACGTTAAGAAAG
CCCCTAACGCCCTCTACGTCTGCGGTCAAGAACCCGTTGAACAGCCTAGC
AGCGATGTGGGCACAATTGTCCTTGTCGACGCAAGGGTAGGCGACGAGAC
AAGGGAAGGAAGGAGGGAAGAAATGAGGGATAGAAGGATGGATAGACGTG
TACATACAATAGAAAGAAGCGATGGCAAGTATGTGTAAGAGTAAGGTTCA
AGGCGATGGAATCAAATCGAATCGGAGAGGAGAGCTTTTCGTATGGCATG
CTCAACTCATAATTATTAGATAGAGGGAAGAGATAGGCGGCAGGCGTTTT
GTAAAAGACTTTAAAGAAGGGAAACGAAAGCAGCATGAGAAAAATAGCGA
CA
back to top

protein sequence of NO04G01520.1

>NO04G01520.1-protein ID=NO04G01520.1-protein|Name=NO04G01520.1|organism=Nannochloropsis oceanica|type=polypeptide|length=307bp
MRQTCTIALLLVVATTLLAVSAFVPALSKSTTTTRLSSCSRPLSSRPLSS
SSRSRTNTALQSISLDSFFGRRTQNSAGSSGDMTSATAPITIMEVQRQDL
RIIASVCIESFFGTADRLNPIRSMQLATLLDEQLTDLRSRFGGRAVGGSV
FLQAVDADGQIQGVVEIGVTQSMKWGFEQYGVPVRDERPYLANLSVRPGA
RRQGIGRALVQACEEIVQNSWGFDELILQVEDTNQQARKLYRDLGYVDLY
TDATGRKYELSGMSIKNVRINKVTLRKPLTPSTSAVKNPLNSLAAMWAQL
SLSTQG*
back to top

mRNA from alignment at chr4:469889..471090-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO04G01520.1 ID=NO04G01520.1|Name=NO04G01520.1|organism=Nannochloropsis oceanica|type=mRNA|length=1202bp|location=Sequence derived from alignment at chr4:469889..471090- (Nannochloropsis oceanica)
ACAGCCCCATACAGCCACCATGCGTCAAACATGCACAATAGCGCTGCTCC
TGGTGGTGGCCACGACCCTGCTGGCTGTATCTGCATTCGTCCCCGCACTG
TCAAAGTCCACCACTACCACACGCCTCAGTTCCTGCAGCAGACCTCTGAG
CAGCAGACCTCTGAGCAGCAGCAGCAGATCACGCACCAACACCGCCCTGC
AAAGTATCAGCCTGGACTCGTTCTTCGGGAGGCGCACACAAAATTCCGCC
GGTAGCAGCGGCGACATGACCAGCGCGACCGCGCCCATCACCATCATGGA
AGTCCAACGGCAAGACCTGCGGATTATTGCATCTGTGTGTATTGAAAGTT
TTTTTGGGACGGCCGATAGGCTCAACCCCATCCGTTCCATGCAACTAGCC
ACGTTATTGGACGAGCAATTAACTGACTTGCGCTCCCGCTTTGGTGGGCG
TGCGGTGGGGGGCTCCGTTTTTTTGCAAGCCGTGGATGCGGACGGACAGA
TTCAAGGAGTGGTGGAAATTGGGGTGACTCAATCGATGAAGTGGGGCTTT
GAACAGTACGGGGTGCCTGTGCGTGATGAGCGACCTTATCTCGCTAATCT
ATCAGTGCGGCCTGGGGCGCGAAGGCAAGGGATAGGTCGCGCCTTGGTGC
AAGCATGTGAGGAGATTGTCCAGAATTCATGGGGCTTCGACGAGTTAATT
TTGCAAGTAGAAGACACGAACCAACAAGCCCGCAAGCTTTATCGTGATCT
TGGCTACGTTGATTTGTACACGGATGCAACTGGCCGTAAGTACGAGTTGA
GTGGAATGAGCATTAAGAATGTGCGAATCAATAAAGTCACGTTAAGAAAG
CCCCTAACGCCCTCTACGTCTGCGGTCAAGAACCCGTTGAACAGCCTAGC
AGCGATGTGGGCACAATTGTCCTTGTCGACGCAAGGGTAGGCGACGAGAC
AAGGGAAGGAAGGAGGGAAGAAATGAGGGATAGAAGGATGGATAGACGTG
TACATACAATAGAAAGAAGCGATGGCAAGTATGTGTAAGAGTAAGGTTCA
AGGCGATGGAATCAAATCGAATCGGAGAGGAGAGCTTTTCGTATGGCATG
CTCAACTCATAATTATTAGATAGAGGGAAGAGATAGGCGGCAGGCGTTTT
GTAAAAGACTTTAAAGAAGGGAAACGAAAGCAGCATGAGAAAAATAGCGA
CA
back to top

Coding sequence (CDS) from alignment at chr4:469889..471090-

>NO04G01520.1 ID=NO04G01520.1|Name=NO04G01520.1|organism=Nannochloropsis oceanica|type=CDS|length=921bp|location=Sequence derived from alignment at chr4:469889..471090- (Nannochloropsis oceanica)
ATGCGTCAAACATGCACAATAGCGCTGCTCCTGGTGGTGGCCACGACCCT
GCTGGCTGTATCTGCATTCGTCCCCGCACTGTCAAAGTCCACCACTACCA
CACGCCTCAGTTCCTGCAGCAGACCTCTGAGCAGCAGACCTCTGAGCAGC
AGCAGCAGATCACGCACCAACACCGCCCTGCAAAGTATCAGCCTGGACTC
GTTCTTCGGGAGGCGCACACAAAATTCCGCCGGTAGCAGCGGCGACATGA
CCAGCGCGACCGCGCCCATCACCATCATGGAAGTCCAACGGCAAGACCTG
CGGATTATTGCATCTGTGTGTATTGAAAGTTTTTTTGGGACGGCCGATAG
GCTCAACCCCATCCGTTCCATGCAACTAGCCACGTTATTGGACGAGCAAT
TAACTGACTTGCGCTCCCGCTTTGGTGGGCGTGCGGTGGGGGGCTCCGTT
TTTTTGCAAGCCGTGGATGCGGACGGACAGATTCAAGGAGTGGTGGAAAT
TGGGGTGACTCAATCGATGAAGTGGGGCTTTGAACAGTACGGGGTGCCTG
TGCGTGATGAGCGACCTTATCTCGCTAATCTATCAGTGCGGCCTGGGGCG
CGAAGGCAAGGGATAGGTCGCGCCTTGGTGCAAGCATGTGAGGAGATTGT
CCAGAATTCATGGGGCTTCGACGAGTTAATTTTGCAAGTAGAAGACACGA
ACCAACAAGCCCGCAAGCTTTATCGTGATCTTGGCTACGTTGATTTGTAC
ACGGATGCAACTGGCCGTAAGTACGAGTTGAGTGGAATGAGCATTAAGAA
TGTGCGAATCAATAAAGTCACGTTAAGAAAGCCCCTAACGCCCTCTACGT
CTGCGGTCAAGAACCCGTTGAACAGCCTAGCAGCGATGTGGGCACAATTG
TCCTTGTCGACGCAAGGGTAG
back to top
Synonyms
Publications