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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr4 | genome | chr4:461806..463758 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO04G01490.1 vs.
Match: EWM28572.1 (eukaryotic translation initiation factor 2a [Nannochloropsis gaditana]) HSP 1 Score: 946.8 bits (2446), Expect = 3.500e-272 Identity = 487/655 (74.35%), Postives = 548/655 (83.66%), Query Frame = 0
Query: 6 PP--INILLRGKSGVHMKSLTMSNDGLPTLTPTPDEALGTPVPGDMTEFCADGSAVAIVTSVPSRSVRVVDVDTGKVRWTVEGRNIQALSFSPKGTFLLTWERLVAGGAPQEGNCTAATTS-KESNGSGEAAT--VKGNLLVWRAEDGKLLAGFTQKAFRKPDWPTLQWIPDESLCFRGTTTEIQVYPGHDIGAGAIKKFSVPGGGMGSIRLSPNAAAPHRVACFFPEVKGKPASVRIYQYPEFGVALTSKSFFKAQEAHLRWSPNGQAVLIHTHTDVDTSGVSYYGSTGLYLLHADGSYEVTVPLPKEGPISDAQWAPAGPVQFVVLAGRMPAAATLYNIKAESIFEFGQAHRNTVSFSPHGRFVVLAGFGNLAGEMDFWDRNKQKLMGRNTSHCSVGYGWSPCGRYFMTATLAPRMNVDNAVKLFKYDGDGPLHKAGFEDATLFEACFRPAAPGVFPDRPATPLRKGRKECESGSATATPVTPSPKPKAVYRPPGSTGALAAMLRAEREAVAGPRKVVNGRSNVSGSGYAALG--GSPYIPGLAP---LANAGSKSALKKKARKEKKKAADAVAKALADAEAERAKEEATAAAALRTAAAEDPVKRKKALQKKLKQIDELKARAAGGEALNEDQQQKLASENDLREQVAKMAI 651
PP + ILLR K+GVH++ LT +GLP LTP PDEALG PVPGD+TEFC DGSAVAIVTS P++S+RVVDV+TG VRWTVEGRNIQALSFSP+GTFLLTWERL +GGAPQ G+ TA + S ++ + E AT +KGNLLVWR+E+G L+AGFTQK FRKP+WPTLQW PDESLCFR T T++ VYPG + G + +KF+V GGGM S+R+SPNA+ PHRVACFFPE KGKPASVRIYQYP FGVAL SKSFFKAQEAHLRWSPNG AVLIHTHTDVDTSGVSYYGSTGLYLLHADG YEVTVPLPKEGPISDA+WAPAGP QF+VLAGRMPAAATLYNIKAE IFEFGQAHRNTVSFSPHGRFVVLAGFGNLAGEMDFWDRNKQKLMGRNTSHCSVGYGWSPCGRYFMTATLAPRMNVDNAVKLFKY+G GPLHKA FEDATLF+A FRPAA GVFPDRPATP RKG E S+T P P KPK YRPPGSTGALAA++RAER+A++GP+KV G+ G G +A G G PYIPGLAP N SK+ + KARKEKKKAA+ +A A+AEAER ++E AAA + AAEDPVKR+KA+QKKLKQI+ELKARA GGE LN+DQQ KLA+E L E++AK+ +
Sbjct: 4 PPQAVKILLRSKAGVHLQELTTGENGLPVLTPAPDEALGKPVPGDLTEFCGDGSAVAIVTSTPTKSLRVVDVETGNVRWTVEGRNIQALSFSPQGTFLLTWERLASGGAPQPGSSTATSQSGSTAHTTPETATAGIKGNLLVWRSENGVLVAGFTQKTFRKPEWPTLQWTPDESLCFRATATDVHVYPGQEPGTASPEKFAVSGGGMASLRVSPNASPPHRVACFFPEAKGKPASVRIYQYPHFGVALASKSFFKAQEAHLRWSPNGLAVLIHTHTDVDTSGVSYYGSTGLYLLHADGKYEVTVPLPKEGPISDAKWAPAGPAQFIVLAGRMPAAATLYNIKAEPIFEFGQAHRNTVSFSPHGRFVVLAGFGNLAGEMDFWDRNKQKLMGRNTSHCSVGYGWSPCGRYFMTATLAPRMNVDNAVKLFKYNGAGPLHKAEFEDATLFDASFRPAAGGVFPDRPATPPRKG---MEGDSSTTVP--PPSKPKTAYRPPGSTGALAALIRAERDALSGPKKVAAGK----GGGNSAYGAPGQPYIPGLAPAGATTNGESKNTARNKARKEKKKAAEQALRAQAEAEAERIRKEQAAAALV---AAEDPVKRRKAVQKKLKQIEELKARAMGGEKLNDDQQNKLATEASLVEELAKLEV 646
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO04G01490.1 ID=NO04G01490.1|Name=NO04G01490.1|organism=Nannochloropsis oceanica|type=mRNA|length=1953bp ATGCCCGACTCGCATCCTCCAATCAACATCCTGCTCCGTGGCAAGAGTGG TGTGCATATGAAAAGCCTGACCATGAGCAACGATGGCCTCCCCACCCTCA CCCCCACGCCTGACGAAGCCCTCGGCACGCCCGTGCCTGGGGACATGACC GAGTTTTGCGCCGACGGCAGCGCCGTGGCTATTGTGACATCTGTCCCTTC CAGAAGTGTGCGAGTGGTGGACGTGGACACAGGCAAGGTACGATGGACTG TTGAAGGACGGAATATCCAAGCCTTGTCCTTCTCCCCGAAAGGCACATTT TTGCTTACCTGGGAGCGACTGGTCGCGGGCGGCGCGCCCCAAGAAGGCAA CTGCACCGCTGCCACCACCAGCAAAGAGAGCAACGGCAGTGGTGAGGCAG CTACCGTCAAGGGCAACCTCTTAGTGTGGCGGGCCGAGGACGGGAAGCTG CTGGCAGGGTTCACCCAAAAAGCATTCCGCAAGCCTGACTGGCCAACCTT GCAATGGATACCCGACGAGAGCCTCTGCTTCCGCGGCACGACAACGGAAA TTCAGGTCTATCCCGGACACGATATTGGAGCGGGAGCTATCAAGAAGTTT TCTGTTCCTGGGGGAGGGATGGGCTCGATTCGTCTCAGTCCCAACGCCGC TGCTCCTCATCGCGTCGCGTGCTTTTTCCCTGAAGTCAAAGGGAAGCCTG CTTCGGTCCGCATTTACCAATATCCCGAGTTTGGCGTGGCATTGACATCC AAATCCTTCTTCAAAGCCCAAGAGGCCCACCTGCGGTGGTCCCCCAATGG CCAAGCCGTTCTCATTCACACACACACGGACGTTGATACCTCCGGTGTGT CCTATTATGGTTCCACTGGCCTCTACCTCTTGCACGCCGACGGCAGCTAT GAAGTCACGGTTCCCCTCCCTAAAGAAGGACCGATATCCGACGCTCAATG GGCACCGGCAGGTCCCGTGCAGTTTGTGGTGTTGGCGGGCCGGATGCCAG CGGCCGCGACGTTGTACAATATCAAGGCAGAATCAATTTTTGAGTTTGGA CAGGCGCATAGGAATACGGTGAGTTTCAGCCCTCACGGTCGGTTTGTAGT ACTGGCGGGCTTTGGAAATTTGGCGGGAGAGATGGATTTCTGGGACCGGA ACAAGCAGAAGTTAATGGGGAGGAATACGTCGCATTGTAGCGTGGGATAT GGGTGGAGTCCGTGTGGGAGATATTTTATGACGGCGACATTGGCGCCACG GATGAATGTGGATAATGCCGTTAAGCTGTTTAAATATGATGGTGACGGGC CTTTGCACAAGGCGGGGTTCGAGGATGCAACACTGTTCGAAGCCTGCTTT CGACCGGCGGCCCCAGGTGTGTTTCCTGACCGGCCTGCGACCCCTCTACG CAAGGGGAGGAAGGAGTGCGAGTCGGGGTCGGCTACGGCTACTCCAGTGA CCCCATCCCCCAAGCCCAAAGCCGTGTACAGACCTCCGGGCTCAACGGGT GCACTGGCTGCCATGTTGCGTGCGGAGCGTGAGGCAGTAGCGGGACCAAG GAAGGTTGTGAATGGGAGGAGTAATGTTAGTGGTAGTGGGTATGCTGCGT TGGGAGGGTCGCCCTACATTCCGGGGTTGGCCCCTTTGGCCAATGCCGGA AGCAAGAGTGCCCTCAAGAAAAAGGCGCGCAAAGAGAAAAAGAAGGCAGC CGATGCAGTGGCCAAGGCACTGGCTGACGCAGAGGCGGAAAGAGCGAAAG AGGAAGCCACTGCGGCAGCAGCACTGCGAACAGCGGCGGCGGAGGACCCA GTCAAAAGGAAAAAGGCATTGCAGAAAAAGCTCAAGCAGATTGATGAGCT GAAGGCACGGGCAGCGGGAGGGGAAGCGTTGAATGAGGACCAACAACAAA AACTGGCCAGCGAGAACGACTTGAGAGAGCAAGTGGCCAAGATGGCAATT TAA back to topprotein sequence of NO04G01490.1 >NO04G01490.1-protein ID=NO04G01490.1-protein|Name=NO04G01490.1|organism=Nannochloropsis oceanica|type=polypeptide|length=651bp MPDSHPPINILLRGKSGVHMKSLTMSNDGLPTLTPTPDEALGTPVPGDMT EFCADGSAVAIVTSVPSRSVRVVDVDTGKVRWTVEGRNIQALSFSPKGTF LLTWERLVAGGAPQEGNCTAATTSKESNGSGEAATVKGNLLVWRAEDGKL LAGFTQKAFRKPDWPTLQWIPDESLCFRGTTTEIQVYPGHDIGAGAIKKF SVPGGGMGSIRLSPNAAAPHRVACFFPEVKGKPASVRIYQYPEFGVALTS KSFFKAQEAHLRWSPNGQAVLIHTHTDVDTSGVSYYGSTGLYLLHADGSY EVTVPLPKEGPISDAQWAPAGPVQFVVLAGRMPAAATLYNIKAESIFEFG QAHRNTVSFSPHGRFVVLAGFGNLAGEMDFWDRNKQKLMGRNTSHCSVGY GWSPCGRYFMTATLAPRMNVDNAVKLFKYDGDGPLHKAGFEDATLFEACF RPAAPGVFPDRPATPLRKGRKECESGSATATPVTPSPKPKAVYRPPGSTG ALAAMLRAEREAVAGPRKVVNGRSNVSGSGYAALGGSPYIPGLAPLANAG SKSALKKKARKEKKKAADAVAKALADAEAERAKEEATAAAALRTAAAEDP VKRKKALQKKLKQIDELKARAAGGEALNEDQQQKLASENDLREQVAKMAI * back to topmRNA from alignment at chr4:461806..463758- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO04G01490.1 ID=NO04G01490.1|Name=NO04G01490.1|organism=Nannochloropsis oceanica|type=mRNA|length=1953bp|location=Sequence derived from alignment at chr4:461806..463758- (Nannochloropsis oceanica) ATGCCCGACTCGCATCCTCCAATCAACATCCTGCTCCGTGGCAAGAGTGG
TGTGCATATGAAAAGCCTGACCATGAGCAACGATGGCCTCCCCACCCTCA
CCCCCACGCCTGACGAAGCCCTCGGCACGCCCGTGCCTGGGGACATGACC
GAGTTTTGCGCCGACGGCAGCGCCGTGGCTATTGTGACATCTGTCCCTTC
CAGAAGTGTGCGAGTGGTGGACGTGGACACAGGCAAGGTACGATGGACTG
TTGAAGGACGGAATATCCAAGCCTTGTCCTTCTCCCCGAAAGGCACATTT
TTGCTTACCTGGGAGCGACTGGTCGCGGGCGGCGCGCCCCAAGAAGGCAA
CTGCACCGCTGCCACCACCAGCAAAGAGAGCAACGGCAGTGGTGAGGCAG
CTACCGTCAAGGGCAACCTCTTAGTGTGGCGGGCCGAGGACGGGAAGCTG
CTGGCAGGGTTCACCCAAAAAGCATTCCGCAAGCCTGACTGGCCAACCTT
GCAATGGATACCCGACGAGAGCCTCTGCTTCCGCGGCACGACAACGGAAA
TTCAGGTCTATCCCGGACACGATATTGGAGCGGGAGCTATCAAGAAGTTT
TCTGTTCCTGGGGGAGGGATGGGCTCGATTCGTCTCAGTCCCAACGCCGC
TGCTCCTCATCGCGTCGCGTGCTTTTTCCCTGAAGTCAAAGGGAAGCCTG
CTTCGGTCCGCATTTACCAATATCCCGAGTTTGGCGTGGCATTGACATCC
AAATCCTTCTTCAAAGCCCAAGAGGCCCACCTGCGGTGGTCCCCCAATGG
CCAAGCCGTTCTCATTCACACACACACGGACGTTGATACCTCCGGTGTGT
CCTATTATGGTTCCACTGGCCTCTACCTCTTGCACGCCGACGGCAGCTAT
GAAGTCACGGTTCCCCTCCCTAAAGAAGGACCGATATCCGACGCTCAATG
GGCACCGGCAGGTCCCGTGCAGTTTGTGGTGTTGGCGGGCCGGATGCCAG
CGGCCGCGACGTTGTACAATATCAAGGCAGAATCAATTTTTGAGTTTGGA
CAGGCGCATAGGAATACGGTGAGTTTCAGCCCTCACGGTCGGTTTGTAGT
ACTGGCGGGCTTTGGAAATTTGGCGGGAGAGATGGATTTCTGGGACCGGA
ACAAGCAGAAGTTAATGGGGAGGAATACGTCGCATTGTAGCGTGGGATAT
GGGTGGAGTCCGTGTGGGAGATATTTTATGACGGCGACATTGGCGCCACG
GATGAATGTGGATAATGCCGTTAAGCTGTTTAAATATGATGGTGACGGGC
CTTTGCACAAGGCGGGGTTCGAGGATGCAACACTGTTCGAAGCCTGCTTT
CGACCGGCGGCCCCAGGTGTGTTTCCTGACCGGCCTGCGACCCCTCTACG
CAAGGGGAGGAAGGAGTGCGAGTCGGGGTCGGCTACGGCTACTCCAGTGA
CCCCATCCCCCAAGCCCAAAGCCGTGTACAGACCTCCGGGCTCAACGGGT
GCACTGGCTGCCATGTTGCGTGCGGAGCGTGAGGCAGTAGCGGGACCAAG
GAAGGTTGTGAATGGGAGGAGTAATGTTAGTGGTAGTGGGTATGCTGCGT
TGGGAGGGTCGCCCTACATTCCGGGGTTGGCCCCTTTGGCCAATGCCGGA
AGCAAGAGTGCCCTCAAGAAAAAGGCGCGCAAAGAGAAAAAGAAGGCAGC
CGATGCAGTGGCCAAGGCACTGGCTGACGCAGAGGCGGAAAGAGCGAAAG
AGGAAGCCACTGCGGCAGCAGCACTGCGAACAGCGGCGGCGGAGGACCCA
GTCAAAAGGAAAAAGGCATTGCAGAAAAAGCTCAAGCAGATTGATGAGCT
GAAGGCACGGGCAGCGGGAGGGGAAGCGTTGAATGAGGACCAACAACAAA
AACTGGCCAGCGAGAACGACTTGAGAGAGCAAGTGGCCAAGATGGCAATT
TAA back to topCoding sequence (CDS) from alignment at chr4:461806..463758- >NO04G01490.1 ID=NO04G01490.1|Name=NO04G01490.1|organism=Nannochloropsis oceanica|type=CDS|length=1953bp|location=Sequence derived from alignment at chr4:461806..463758- (Nannochloropsis oceanica) ATGCCCGACTCGCATCCTCCAATCAACATCCTGCTCCGTGGCAAGAGTGG TGTGCATATGAAAAGCCTGACCATGAGCAACGATGGCCTCCCCACCCTCA CCCCCACGCCTGACGAAGCCCTCGGCACGCCCGTGCCTGGGGACATGACC GAGTTTTGCGCCGACGGCAGCGCCGTGGCTATTGTGACATCTGTCCCTTC CAGAAGTGTGCGAGTGGTGGACGTGGACACAGGCAAGGTACGATGGACTG TTGAAGGACGGAATATCCAAGCCTTGTCCTTCTCCCCGAAAGGCACATTT TTGCTTACCTGGGAGCGACTGGTCGCGGGCGGCGCGCCCCAAGAAGGCAA CTGCACCGCTGCCACCACCAGCAAAGAGAGCAACGGCAGTGGTGAGGCAG CTACCGTCAAGGGCAACCTCTTAGTGTGGCGGGCCGAGGACGGGAAGCTG CTGGCAGGGTTCACCCAAAAAGCATTCCGCAAGCCTGACTGGCCAACCTT GCAATGGATACCCGACGAGAGCCTCTGCTTCCGCGGCACGACAACGGAAA TTCAGGTCTATCCCGGACACGATATTGGAGCGGGAGCTATCAAGAAGTTT TCTGTTCCTGGGGGAGGGATGGGCTCGATTCGTCTCAGTCCCAACGCCGC TGCTCCTCATCGCGTCGCGTGCTTTTTCCCTGAAGTCAAAGGGAAGCCTG CTTCGGTCCGCATTTACCAATATCCCGAGTTTGGCGTGGCATTGACATCC AAATCCTTCTTCAAAGCCCAAGAGGCCCACCTGCGGTGGTCCCCCAATGG CCAAGCCGTTCTCATTCACACACACACGGACGTTGATACCTCCGGTGTGT CCTATTATGGTTCCACTGGCCTCTACCTCTTGCACGCCGACGGCAGCTAT GAAGTCACGGTTCCCCTCCCTAAAGAAGGACCGATATCCGACGCTCAATG GGCACCGGCAGGTCCCGTGCAGTTTGTGGTGTTGGCGGGCCGGATGCCAG CGGCCGCGACGTTGTACAATATCAAGGCAGAATCAATTTTTGAGTTTGGA CAGGCGCATAGGAATACGGTGAGTTTCAGCCCTCACGGTCGGTTTGTAGT ACTGGCGGGCTTTGGAAATTTGGCGGGAGAGATGGATTTCTGGGACCGGA ACAAGCAGAAGTTAATGGGGAGGAATACGTCGCATTGTAGCGTGGGATAT GGGTGGAGTCCGTGTGGGAGATATTTTATGACGGCGACATTGGCGCCACG GATGAATGTGGATAATGCCGTTAAGCTGTTTAAATATGATGGTGACGGGC CTTTGCACAAGGCGGGGTTCGAGGATGCAACACTGTTCGAAGCCTGCTTT CGACCGGCGGCCCCAGGTGTGTTTCCTGACCGGCCTGCGACCCCTCTACG CAAGGGGAGGAAGGAGTGCGAGTCGGGGTCGGCTACGGCTACTCCAGTGA CCCCATCCCCCAAGCCCAAAGCCGTGTACAGACCTCCGGGCTCAACGGGT GCACTGGCTGCCATGTTGCGTGCGGAGCGTGAGGCAGTAGCGGGACCAAG GAAGGTTGTGAATGGGAGGAGTAATGTTAGTGGTAGTGGGTATGCTGCGT TGGGAGGGTCGCCCTACATTCCGGGGTTGGCCCCTTTGGCCAATGCCGGA AGCAAGAGTGCCCTCAAGAAAAAGGCGCGCAAAGAGAAAAAGAAGGCAGC CGATGCAGTGGCCAAGGCACTGGCTGACGCAGAGGCGGAAAGAGCGAAAG AGGAAGCCACTGCGGCAGCAGCACTGCGAACAGCGGCGGCGGAGGACCCA GTCAAAAGGAAAAAGGCATTGCAGAAAAAGCTCAAGCAGATTGATGAGCT GAAGGCACGGGCAGCGGGAGGGGAAGCGTTGAATGAGGACCAACAACAAA AACTGGCCAGCGAGAACGACTTGAGAGAGCAAGTGGCCAAGATGGCAATT TAA back to top
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