NO04G01490.1, NO04G01490.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO04G01490.1
Unique NameNO04G01490.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1953
Alignment locationchr4:461806..463758 -

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:461806..463758 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO04G01490.1 vs.
Match: EWM28572.1 (eukaryotic translation initiation factor 2a [Nannochloropsis gaditana])

HSP 1 Score: 946.8 bits (2446), Expect = 3.500e-272
Identity = 487/655 (74.35%), Postives = 548/655 (83.66%), Query Frame = 0
Query:    6 PP--INILLRGKSGVHMKSLTMSNDGLPTLTPTPDEALGTPVPGDMTEFCADGSAVAIVTSVPSRSVRVVDVDTGKVRWTVEGRNIQALSFSPKGTFLLTWERLVAGGAPQEGNCTAATTS-KESNGSGEAAT--VKGNLLVWRAEDGKLLAGFTQKAFRKPDWPTLQWIPDESLCFRGTTTEIQVYPGHDIGAGAIKKFSVPGGGMGSIRLSPNAAAPHRVACFFPEVKGKPASVRIYQYPEFGVALTSKSFFKAQEAHLRWSPNGQAVLIHTHTDVDTSGVSYYGSTGLYLLHADGSYEVTVPLPKEGPISDAQWAPAGPVQFVVLAGRMPAAATLYNIKAESIFEFGQAHRNTVSFSPHGRFVVLAGFGNLAGEMDFWDRNKQKLMGRNTSHCSVGYGWSPCGRYFMTATLAPRMNVDNAVKLFKYDGDGPLHKAGFEDATLFEACFRPAAPGVFPDRPATPLRKGRKECESGSATATPVTPSPKPKAVYRPPGSTGALAAMLRAEREAVAGPRKVVNGRSNVSGSGYAALG--GSPYIPGLAP---LANAGSKSALKKKARKEKKKAADAVAKALADAEAERAKEEATAAAALRTAAAEDPVKRKKALQKKLKQIDELKARAAGGEALNEDQQQKLASENDLREQVAKMAI 651
            PP  + ILLR K+GVH++ LT   +GLP LTP PDEALG PVPGD+TEFC DGSAVAIVTS P++S+RVVDV+TG VRWTVEGRNIQALSFSP+GTFLLTWERL +GGAPQ G+ TA + S   ++ + E AT  +KGNLLVWR+E+G L+AGFTQK FRKP+WPTLQW PDESLCFR T T++ VYPG + G  + +KF+V GGGM S+R+SPNA+ PHRVACFFPE KGKPASVRIYQYP FGVAL SKSFFKAQEAHLRWSPNG AVLIHTHTDVDTSGVSYYGSTGLYLLHADG YEVTVPLPKEGPISDA+WAPAGP QF+VLAGRMPAAATLYNIKAE IFEFGQAHRNTVSFSPHGRFVVLAGFGNLAGEMDFWDRNKQKLMGRNTSHCSVGYGWSPCGRYFMTATLAPRMNVDNAVKLFKY+G GPLHKA FEDATLF+A FRPAA GVFPDRPATP RKG    E  S+T  P  P  KPK  YRPPGSTGALAA++RAER+A++GP+KV  G+    G G +A G  G PYIPGLAP     N  SK+  + KARKEKKKAA+   +A A+AEAER ++E  AAA +   AAEDPVKR+KA+QKKLKQI+ELKARA GGE LN+DQQ KLA+E  L E++AK+ +
Sbjct:    4 PPQAVKILLRSKAGVHLQELTTGENGLPVLTPAPDEALGKPVPGDLTEFCGDGSAVAIVTSTPTKSLRVVDVETGNVRWTVEGRNIQALSFSPQGTFLLTWERLASGGAPQPGSSTATSQSGSTAHTTPETATAGIKGNLLVWRSENGVLVAGFTQKTFRKPEWPTLQWTPDESLCFRATATDVHVYPGQEPGTASPEKFAVSGGGMASLRVSPNASPPHRVACFFPEAKGKPASVRIYQYPHFGVALASKSFFKAQEAHLRWSPNGLAVLIHTHTDVDTSGVSYYGSTGLYLLHADGKYEVTVPLPKEGPISDAKWAPAGPAQFIVLAGRMPAAATLYNIKAEPIFEFGQAHRNTVSFSPHGRFVVLAGFGNLAGEMDFWDRNKQKLMGRNTSHCSVGYGWSPCGRYFMTATLAPRMNVDNAVKLFKYNGAGPLHKAEFEDATLFDASFRPAAGGVFPDRPATPPRKG---MEGDSSTTVP--PPSKPKTAYRPPGSTGALAALIRAERDALSGPKKVAAGK----GGGNSAYGAPGQPYIPGLAPAGATTNGESKNTARNKARKEKKKAAEQALRAQAEAEAERIRKEQAAAALV---AAEDPVKRRKAVQKKLKQIEELKARAMGGEKLNDDQQNKLATEASLVEELAKLEV 646          
The following BLAST results are available for this feature:
BLAST of NO04G01490.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28572.13.500e-27274.35eukaryotic translation initiation factor 2a [Nanno... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO04G01490NO04G01490Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO04G01490.1NO04G01490.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO04G01490.1.cds1NO04G01490.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO04G01490.1 ID=NO04G01490.1|Name=NO04G01490.1|organism=Nannochloropsis oceanica|type=mRNA|length=1953bp
ATGCCCGACTCGCATCCTCCAATCAACATCCTGCTCCGTGGCAAGAGTGG
TGTGCATATGAAAAGCCTGACCATGAGCAACGATGGCCTCCCCACCCTCA
CCCCCACGCCTGACGAAGCCCTCGGCACGCCCGTGCCTGGGGACATGACC
GAGTTTTGCGCCGACGGCAGCGCCGTGGCTATTGTGACATCTGTCCCTTC
CAGAAGTGTGCGAGTGGTGGACGTGGACACAGGCAAGGTACGATGGACTG
TTGAAGGACGGAATATCCAAGCCTTGTCCTTCTCCCCGAAAGGCACATTT
TTGCTTACCTGGGAGCGACTGGTCGCGGGCGGCGCGCCCCAAGAAGGCAA
CTGCACCGCTGCCACCACCAGCAAAGAGAGCAACGGCAGTGGTGAGGCAG
CTACCGTCAAGGGCAACCTCTTAGTGTGGCGGGCCGAGGACGGGAAGCTG
CTGGCAGGGTTCACCCAAAAAGCATTCCGCAAGCCTGACTGGCCAACCTT
GCAATGGATACCCGACGAGAGCCTCTGCTTCCGCGGCACGACAACGGAAA
TTCAGGTCTATCCCGGACACGATATTGGAGCGGGAGCTATCAAGAAGTTT
TCTGTTCCTGGGGGAGGGATGGGCTCGATTCGTCTCAGTCCCAACGCCGC
TGCTCCTCATCGCGTCGCGTGCTTTTTCCCTGAAGTCAAAGGGAAGCCTG
CTTCGGTCCGCATTTACCAATATCCCGAGTTTGGCGTGGCATTGACATCC
AAATCCTTCTTCAAAGCCCAAGAGGCCCACCTGCGGTGGTCCCCCAATGG
CCAAGCCGTTCTCATTCACACACACACGGACGTTGATACCTCCGGTGTGT
CCTATTATGGTTCCACTGGCCTCTACCTCTTGCACGCCGACGGCAGCTAT
GAAGTCACGGTTCCCCTCCCTAAAGAAGGACCGATATCCGACGCTCAATG
GGCACCGGCAGGTCCCGTGCAGTTTGTGGTGTTGGCGGGCCGGATGCCAG
CGGCCGCGACGTTGTACAATATCAAGGCAGAATCAATTTTTGAGTTTGGA
CAGGCGCATAGGAATACGGTGAGTTTCAGCCCTCACGGTCGGTTTGTAGT
ACTGGCGGGCTTTGGAAATTTGGCGGGAGAGATGGATTTCTGGGACCGGA
ACAAGCAGAAGTTAATGGGGAGGAATACGTCGCATTGTAGCGTGGGATAT
GGGTGGAGTCCGTGTGGGAGATATTTTATGACGGCGACATTGGCGCCACG
GATGAATGTGGATAATGCCGTTAAGCTGTTTAAATATGATGGTGACGGGC
CTTTGCACAAGGCGGGGTTCGAGGATGCAACACTGTTCGAAGCCTGCTTT
CGACCGGCGGCCCCAGGTGTGTTTCCTGACCGGCCTGCGACCCCTCTACG
CAAGGGGAGGAAGGAGTGCGAGTCGGGGTCGGCTACGGCTACTCCAGTGA
CCCCATCCCCCAAGCCCAAAGCCGTGTACAGACCTCCGGGCTCAACGGGT
GCACTGGCTGCCATGTTGCGTGCGGAGCGTGAGGCAGTAGCGGGACCAAG
GAAGGTTGTGAATGGGAGGAGTAATGTTAGTGGTAGTGGGTATGCTGCGT
TGGGAGGGTCGCCCTACATTCCGGGGTTGGCCCCTTTGGCCAATGCCGGA
AGCAAGAGTGCCCTCAAGAAAAAGGCGCGCAAAGAGAAAAAGAAGGCAGC
CGATGCAGTGGCCAAGGCACTGGCTGACGCAGAGGCGGAAAGAGCGAAAG
AGGAAGCCACTGCGGCAGCAGCACTGCGAACAGCGGCGGCGGAGGACCCA
GTCAAAAGGAAAAAGGCATTGCAGAAAAAGCTCAAGCAGATTGATGAGCT
GAAGGCACGGGCAGCGGGAGGGGAAGCGTTGAATGAGGACCAACAACAAA
AACTGGCCAGCGAGAACGACTTGAGAGAGCAAGTGGCCAAGATGGCAATT
TAA
back to top

protein sequence of NO04G01490.1

>NO04G01490.1-protein ID=NO04G01490.1-protein|Name=NO04G01490.1|organism=Nannochloropsis oceanica|type=polypeptide|length=651bp
MPDSHPPINILLRGKSGVHMKSLTMSNDGLPTLTPTPDEALGTPVPGDMT
EFCADGSAVAIVTSVPSRSVRVVDVDTGKVRWTVEGRNIQALSFSPKGTF
LLTWERLVAGGAPQEGNCTAATTSKESNGSGEAATVKGNLLVWRAEDGKL
LAGFTQKAFRKPDWPTLQWIPDESLCFRGTTTEIQVYPGHDIGAGAIKKF
SVPGGGMGSIRLSPNAAAPHRVACFFPEVKGKPASVRIYQYPEFGVALTS
KSFFKAQEAHLRWSPNGQAVLIHTHTDVDTSGVSYYGSTGLYLLHADGSY
EVTVPLPKEGPISDAQWAPAGPVQFVVLAGRMPAAATLYNIKAESIFEFG
QAHRNTVSFSPHGRFVVLAGFGNLAGEMDFWDRNKQKLMGRNTSHCSVGY
GWSPCGRYFMTATLAPRMNVDNAVKLFKYDGDGPLHKAGFEDATLFEACF
RPAAPGVFPDRPATPLRKGRKECESGSATATPVTPSPKPKAVYRPPGSTG
ALAAMLRAEREAVAGPRKVVNGRSNVSGSGYAALGGSPYIPGLAPLANAG
SKSALKKKARKEKKKAADAVAKALADAEAERAKEEATAAAALRTAAAEDP
VKRKKALQKKLKQIDELKARAAGGEALNEDQQQKLASENDLREQVAKMAI
*
back to top

mRNA from alignment at chr4:461806..463758-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO04G01490.1 ID=NO04G01490.1|Name=NO04G01490.1|organism=Nannochloropsis oceanica|type=mRNA|length=1953bp|location=Sequence derived from alignment at chr4:461806..463758- (Nannochloropsis oceanica)
ATGCCCGACTCGCATCCTCCAATCAACATCCTGCTCCGTGGCAAGAGTGG TGTGCATATGAAAAGCCTGACCATGAGCAACGATGGCCTCCCCACCCTCA CCCCCACGCCTGACGAAGCCCTCGGCACGCCCGTGCCTGGGGACATGACC GAGTTTTGCGCCGACGGCAGCGCCGTGGCTATTGTGACATCTGTCCCTTC CAGAAGTGTGCGAGTGGTGGACGTGGACACAGGCAAGGTACGATGGACTG TTGAAGGACGGAATATCCAAGCCTTGTCCTTCTCCCCGAAAGGCACATTT TTGCTTACCTGGGAGCGACTGGTCGCGGGCGGCGCGCCCCAAGAAGGCAA CTGCACCGCTGCCACCACCAGCAAAGAGAGCAACGGCAGTGGTGAGGCAG CTACCGTCAAGGGCAACCTCTTAGTGTGGCGGGCCGAGGACGGGAAGCTG CTGGCAGGGTTCACCCAAAAAGCATTCCGCAAGCCTGACTGGCCAACCTT GCAATGGATACCCGACGAGAGCCTCTGCTTCCGCGGCACGACAACGGAAA TTCAGGTCTATCCCGGACACGATATTGGAGCGGGAGCTATCAAGAAGTTT TCTGTTCCTGGGGGAGGGATGGGCTCGATTCGTCTCAGTCCCAACGCCGC TGCTCCTCATCGCGTCGCGTGCTTTTTCCCTGAAGTCAAAGGGAAGCCTG CTTCGGTCCGCATTTACCAATATCCCGAGTTTGGCGTGGCATTGACATCC AAATCCTTCTTCAAAGCCCAAGAGGCCCACCTGCGGTGGTCCCCCAATGG CCAAGCCGTTCTCATTCACACACACACGGACGTTGATACCTCCGGTGTGT CCTATTATGGTTCCACTGGCCTCTACCTCTTGCACGCCGACGGCAGCTAT GAAGTCACGGTTCCCCTCCCTAAAGAAGGACCGATATCCGACGCTCAATG GGCACCGGCAGGTCCCGTGCAGTTTGTGGTGTTGGCGGGCCGGATGCCAG CGGCCGCGACGTTGTACAATATCAAGGCAGAATCAATTTTTGAGTTTGGA CAGGCGCATAGGAATACGGTGAGTTTCAGCCCTCACGGTCGGTTTGTAGT ACTGGCGGGCTTTGGAAATTTGGCGGGAGAGATGGATTTCTGGGACCGGA ACAAGCAGAAGTTAATGGGGAGGAATACGTCGCATTGTAGCGTGGGATAT GGGTGGAGTCCGTGTGGGAGATATTTTATGACGGCGACATTGGCGCCACG GATGAATGTGGATAATGCCGTTAAGCTGTTTAAATATGATGGTGACGGGC CTTTGCACAAGGCGGGGTTCGAGGATGCAACACTGTTCGAAGCCTGCTTT CGACCGGCGGCCCCAGGTGTGTTTCCTGACCGGCCTGCGACCCCTCTACG CAAGGGGAGGAAGGAGTGCGAGTCGGGGTCGGCTACGGCTACTCCAGTGA CCCCATCCCCCAAGCCCAAAGCCGTGTACAGACCTCCGGGCTCAACGGGT GCACTGGCTGCCATGTTGCGTGCGGAGCGTGAGGCAGTAGCGGGACCAAG GAAGGTTGTGAATGGGAGGAGTAATGTTAGTGGTAGTGGGTATGCTGCGT TGGGAGGGTCGCCCTACATTCCGGGGTTGGCCCCTTTGGCCAATGCCGGA AGCAAGAGTGCCCTCAAGAAAAAGGCGCGCAAAGAGAAAAAGAAGGCAGC CGATGCAGTGGCCAAGGCACTGGCTGACGCAGAGGCGGAAAGAGCGAAAG AGGAAGCCACTGCGGCAGCAGCACTGCGAACAGCGGCGGCGGAGGACCCA GTCAAAAGGAAAAAGGCATTGCAGAAAAAGCTCAAGCAGATTGATGAGCT GAAGGCACGGGCAGCGGGAGGGGAAGCGTTGAATGAGGACCAACAACAAA AACTGGCCAGCGAGAACGACTTGAGAGAGCAAGTGGCCAAGATGGCAATT TAA
back to top

Coding sequence (CDS) from alignment at chr4:461806..463758-

>NO04G01490.1 ID=NO04G01490.1|Name=NO04G01490.1|organism=Nannochloropsis oceanica|type=CDS|length=1953bp|location=Sequence derived from alignment at chr4:461806..463758- (Nannochloropsis oceanica)
ATGCCCGACTCGCATCCTCCAATCAACATCCTGCTCCGTGGCAAGAGTGG
TGTGCATATGAAAAGCCTGACCATGAGCAACGATGGCCTCCCCACCCTCA
CCCCCACGCCTGACGAAGCCCTCGGCACGCCCGTGCCTGGGGACATGACC
GAGTTTTGCGCCGACGGCAGCGCCGTGGCTATTGTGACATCTGTCCCTTC
CAGAAGTGTGCGAGTGGTGGACGTGGACACAGGCAAGGTACGATGGACTG
TTGAAGGACGGAATATCCAAGCCTTGTCCTTCTCCCCGAAAGGCACATTT
TTGCTTACCTGGGAGCGACTGGTCGCGGGCGGCGCGCCCCAAGAAGGCAA
CTGCACCGCTGCCACCACCAGCAAAGAGAGCAACGGCAGTGGTGAGGCAG
CTACCGTCAAGGGCAACCTCTTAGTGTGGCGGGCCGAGGACGGGAAGCTG
CTGGCAGGGTTCACCCAAAAAGCATTCCGCAAGCCTGACTGGCCAACCTT
GCAATGGATACCCGACGAGAGCCTCTGCTTCCGCGGCACGACAACGGAAA
TTCAGGTCTATCCCGGACACGATATTGGAGCGGGAGCTATCAAGAAGTTT
TCTGTTCCTGGGGGAGGGATGGGCTCGATTCGTCTCAGTCCCAACGCCGC
TGCTCCTCATCGCGTCGCGTGCTTTTTCCCTGAAGTCAAAGGGAAGCCTG
CTTCGGTCCGCATTTACCAATATCCCGAGTTTGGCGTGGCATTGACATCC
AAATCCTTCTTCAAAGCCCAAGAGGCCCACCTGCGGTGGTCCCCCAATGG
CCAAGCCGTTCTCATTCACACACACACGGACGTTGATACCTCCGGTGTGT
CCTATTATGGTTCCACTGGCCTCTACCTCTTGCACGCCGACGGCAGCTAT
GAAGTCACGGTTCCCCTCCCTAAAGAAGGACCGATATCCGACGCTCAATG
GGCACCGGCAGGTCCCGTGCAGTTTGTGGTGTTGGCGGGCCGGATGCCAG
CGGCCGCGACGTTGTACAATATCAAGGCAGAATCAATTTTTGAGTTTGGA
CAGGCGCATAGGAATACGGTGAGTTTCAGCCCTCACGGTCGGTTTGTAGT
ACTGGCGGGCTTTGGAAATTTGGCGGGAGAGATGGATTTCTGGGACCGGA
ACAAGCAGAAGTTAATGGGGAGGAATACGTCGCATTGTAGCGTGGGATAT
GGGTGGAGTCCGTGTGGGAGATATTTTATGACGGCGACATTGGCGCCACG
GATGAATGTGGATAATGCCGTTAAGCTGTTTAAATATGATGGTGACGGGC
CTTTGCACAAGGCGGGGTTCGAGGATGCAACACTGTTCGAAGCCTGCTTT
CGACCGGCGGCCCCAGGTGTGTTTCCTGACCGGCCTGCGACCCCTCTACG
CAAGGGGAGGAAGGAGTGCGAGTCGGGGTCGGCTACGGCTACTCCAGTGA
CCCCATCCCCCAAGCCCAAAGCCGTGTACAGACCTCCGGGCTCAACGGGT
GCACTGGCTGCCATGTTGCGTGCGGAGCGTGAGGCAGTAGCGGGACCAAG
GAAGGTTGTGAATGGGAGGAGTAATGTTAGTGGTAGTGGGTATGCTGCGT
TGGGAGGGTCGCCCTACATTCCGGGGTTGGCCCCTTTGGCCAATGCCGGA
AGCAAGAGTGCCCTCAAGAAAAAGGCGCGCAAAGAGAAAAAGAAGGCAGC
CGATGCAGTGGCCAAGGCACTGGCTGACGCAGAGGCGGAAAGAGCGAAAG
AGGAAGCCACTGCGGCAGCAGCACTGCGAACAGCGGCGGCGGAGGACCCA
GTCAAAAGGAAAAAGGCATTGCAGAAAAAGCTCAAGCAGATTGATGAGCT
GAAGGCACGGGCAGCGGGAGGGGAAGCGTTGAATGAGGACCAACAACAAA
AACTGGCCAGCGAGAACGACTTGAGAGAGCAAGTGGCCAAGATGGCAATT
TAA
back to top
Synonyms
Publications