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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr4 | genome | chr4:458765..461449 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO04G01480.1 vs.
Match: EWM28525.1 (hypothetical protein Naga_100009g33 [Nannochloropsis gaditana]) HSP 1 Score: 270.4 bits (690), Expect = 2.000e-68 Identity = 133/262 (50.76%), Postives = 183/262 (69.85%), Query Frame = 0
Query: 534 LDPQYLHQLEDLAREDMHRTLEATARNLEEYVCAAEEKCEQLRLLMEPMYLQYKLEKAPSIAKALPLSFYPLDLLAADGTMGGDEQISLEEKTLVD---------------DRLAYIDALKETAWRCCLMQCDAEMTARMQRKNLQVLDRMAKCTEYQRLLIANLRDNERRTSVPLFQAFKNQIGHDGGIYDDEDVETPLYYCRCIIGSRPATLFMTYEHLAFVSNVPGFGWSRQIRYDEISTCGLASLRIGITLAKAIAIR 781
LD YL QLED+ARE+MH+ L+ T + LE+YV E++C QL+ + PM+ YKL + P + + LPLS+YPL+LLAA E+ S +K+ + D++ Y+DAL++ AWR +MQCDAEMTA MQRKNLQ++DRM +C EYQ L+ LRDN RT+VPLF FK QIGHDGG+++DE+VETPLYYCRCI+GSRPATLF+T+ + FVS V GF W+R++ D I++ G+ + +G+ AKAIA++
Sbjct: 144 LDRFYLRQLEDMAREEMHKALDGTIQQLEDYVLEKEKQCLQLKEFLMPMFTLYKLAEPPGLNEPLPLSYYPLNLLAACNQSARSEEESFADKSDHENVWAENQRPHRSGSLDKVTYMDALRDRAWRHNVMQCDAEMTACMQRKNLQIVDRMGRCNEYQLFLLETLRDNPFRTTVPLFHNFKYQIGHDGGVFEDEEVETPLYYCRCIVGSRPATLFITFTQITFVSKVCGFVWARRLPLDRITSHGMTYMHLGVKRAKAIALK 405
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO04G01480.1 ID=NO04G01480.1|Name=NO04G01480.1|organism=Nannochloropsis oceanica|type=mRNA|length=2685bp ATGATGGAGCCATCATCATCGCCGGCGACAAGTCCCTCGACTCCTTCAAC GCCCCTATTCACCATGGCCAAGGAGGACTTGCCGGCCCTCTTTTCCCAAA TGGAGGACGCCGTTGCCGCCCTGGAGCCCTCACCACCTAACTCTCCCGGT GTGGTACACAATCACCGGGACCATCATGACAGTGACGACGACATGGAACA GGAAGAAGAGCGTTTGCACGATAGCAGTGAGAAGCTTCGGAGCCTCATGA TGATGCGCCGAGGTGCGGGACAGCGCAACGACGAGTATCAGGCAAAGTCA TCGTCATTGGATCCAAATGCAAATGTGCCACGCCAGTTGATTTTTGATGC AGTCGGTGCCACTTCTTCGTCATTGTGCCCTACATCCGCCCTTGACATCG ACGTCTCTTCATCCTCGTCACCCCCCTCCTGTCCTTCCTCCTTGCACGGG TACTCCACACCCCTTCGCTGCGCTCCGACCACCGATCCATCGTCATCCTT GTCGGCTTCTTATAATGGTACAACTTCTACCTCGTCTTCGACTCCGGCTC AACTGCAATATTGGGACTGTACTGACCATCAAAGGGAGGGCACGCCAATG TCGCCAACCCGCACAGCGGGCTTTGCGACGCCACTTGCCTTGAAAACGCC TGAACAAGAATCAATAATTGCGAGGAATGACGAGAAGGTGGAAAACTTGT GCCTGCGTCGAGTGCCCTCTGCCTTTCCGCTGCCATCCGCAGGCGAGGAG GATTTGGAGGTTCTTGGTGATGTTGCCGTGGATCGGAGAGCAGGGGGTGA CGACAACGAAAACAGCACGGACATCATAAGGATTCAGGCGTCTAGTAGCA TTGCCAGCAGTCTTGCTTCTATTATTAGCTGTCTCCCACCCGCGTCGAGC ACCAGAGAACGAAGTGTTTGGGGCGAGGAGGACAAGGACATGCATGAGGT AGGATGTGCCTCTAGGTGCCTGAGTGAGCTGTCGATCCAGCAGCGATTCT TCGGTCTGAGGGATGTGGCTTCAGGTGAAAAATGCAACGATAAATCGTCT TTCTCTGTCTCCAAGCATGTCATGGTTACATCGGCTTGGTGTCGGCACTT GGCCTTCATTGCCCTACGGCCTGACGTTCCATGTGGCGACATAAGCGATC TGGTCACTGAGGTGCTAAGGGAGCAGGGACTCATAGTCCGAAAGCGCCAA GGTTCCCATATTGTGGGAGGGATGAAAGTGGTAGACAAGGAAGGACAGGA AAAAGGTGGCATCTGTGGGAATGGAATTCAAGCGGAGTGGAGCTTTGTGG ACATTCAGGTGGCATTGGATCGACAAGACAGGGAGCGCGTTTTACTTGTG CGTTTCATTATTTCCACCGAGACGGAGGAGGGGGGCTATAACACCGATTG CAAGAAGATCATGACACCGTCAATGGGGAGAAGATCGTCGGTAGCAGGTG TGGAAGGAGGGAGTGATGAACAGGGAACTTTGTTGGAAGCGCTCAAGGCC AAGCTGTTCGGCTCGGGTCTTAATAAAAGAGCACTGCTGCGGGATGTGGA TGCTAATGTGAGCAGCAGTAGCAGCAGCAAATCTAGCAAGAGCATAACGC TCGACCCTCAATACCTTCATCAGCTTGAAGACCTTGCTCGCGAAGATATG CACAGGACTTTGGAAGCGACAGCACGAAATCTGGAGGAGTACGTATGCGC CGCTGAAGAGAAATGCGAGCAACTCAGGTTATTGATGGAGCCCATGTATT TGCAGTATAAGCTTGAGAAAGCCCCGTCAATCGCTAAGGCTTTGCCTTTG TCATTCTACCCGCTAGACTTGCTTGCGGCTGATGGGACTATGGGAGGAGA TGAGCAGATCAGCCTGGAGGAAAAAACACTTGTTGATGATCGGTTGGCAT ACATCGATGCGTTAAAGGAGACGGCCTGGCGATGTTGCTTGATGCAATGT GACGCTGAAATGACGGCACGCATGCAAAGGAAGAATTTGCAGGTCCTGGA TCGTATGGCGAAGTGCACTGAATACCAGAGATTGCTAATTGCGAACTTGC GCGATAATGAACGCAGGACATCTGTGCCGCTATTTCAAGCTTTTAAGAAT CAGATTGGCCATGATGGTGGGATTTATGACGATGAGGATGTGGAGACGCC CTTGTATTATTGTCGCTGCATAATTGGGAGCCGCCCCGCAACACTGTTCA TGACTTACGAGCACTTAGCCTTTGTGAGCAATGTGCCTGGATTTGGGTGG TCGCGTCAGATTCGCTATGATGAGATTTCAACGTGTGGATTGGCATCTCT TCGGATTGGTATTACGCTGGCCAAAGCCATTGCAATCCGAGCTCCGACGG CCAGAGTTGCTTCGCCCATGCCCGTAAAGAGGCCTGGTGGTGCCAGTGGC AAGGCAGCCCCCCGCAGCAGCTGTAGTAGAAGTATTAGAACTAGTGCTGC CGTTGCATCTAGAAAAGCCGAGGAGGAGTCGCTCGTCTTCAGCACCATGA TCGAACCTGAGCGTTTGCTGGACCTCATTAAGTTGTTAATTACTCTCAAT GACGAAAATATCAAGGACGCGGCCTCGATGGGCTCAGAACTTCCTTCGGA AGAAGGACGACAGAATATCCAAGAGCAGGCTTCGTCGAATCTAGCGCGTG AGCTGGAGGCAGCCTCGCCCTTTTTGGTGAATTAG back to topprotein sequence of NO04G01480.1 >NO04G01480.1-protein ID=NO04G01480.1-protein|Name=NO04G01480.1|organism=Nannochloropsis oceanica|type=polypeptide|length=895bp MMEPSSSPATSPSTPSTPLFTMAKEDLPALFSQMEDAVAALEPSPPNSPG VVHNHRDHHDSDDDMEQEEERLHDSSEKLRSLMMMRRGAGQRNDEYQAKS SSLDPNANVPRQLIFDAVGATSSSLCPTSALDIDVSSSSSPPSCPSSLHG YSTPLRCAPTTDPSSSLSASYNGTTSTSSSTPAQLQYWDCTDHQREGTPM SPTRTAGFATPLALKTPEQESIIARNDEKVENLCLRRVPSAFPLPSAGEE DLEVLGDVAVDRRAGGDDNENSTDIIRIQASSSIASSLASIISCLPPASS TRERSVWGEEDKDMHEVGCASRCLSELSIQQRFFGLRDVASGEKCNDKSS FSVSKHVMVTSAWCRHLAFIALRPDVPCGDISDLVTEVLREQGLIVRKRQ GSHIVGGMKVVDKEGQEKGGICGNGIQAEWSFVDIQVALDRQDRERVLLV RFIISTETEEGGYNTDCKKIMTPSMGRRSSVAGVEGGSDEQGTLLEALKA KLFGSGLNKRALLRDVDANVSSSSSSKSSKSITLDPQYLHQLEDLAREDM HRTLEATARNLEEYVCAAEEKCEQLRLLMEPMYLQYKLEKAPSIAKALPL SFYPLDLLAADGTMGGDEQISLEEKTLVDDRLAYIDALKETAWRCCLMQC DAEMTARMQRKNLQVLDRMAKCTEYQRLLIANLRDNERRTSVPLFQAFKN QIGHDGGIYDDEDVETPLYYCRCIIGSRPATLFMTYEHLAFVSNVPGFGW SRQIRYDEISTCGLASLRIGITLAKAIAIRAPTARVASPMPVKRPGGASG KAAPRSSCSRSIRTSAAVASRKAEEESLVFSTMIEPERLLDLIKLLITLN DENIKDAASMGSELPSEEGRQNIQEQASSNLARELEAASPFLVN* back to topmRNA from alignment at chr4:458765..461449- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO04G01480.1 ID=NO04G01480.1|Name=NO04G01480.1|organism=Nannochloropsis oceanica|type=mRNA|length=2685bp|location=Sequence derived from alignment at chr4:458765..461449- (Nannochloropsis oceanica) ATGATGGAGCCATCATCATCGCCGGCGACAAGTCCCTCGACTCCTTCAAC
GCCCCTATTCACCATGGCCAAGGAGGACTTGCCGGCCCTCTTTTCCCAAA
TGGAGGACGCCGTTGCCGCCCTGGAGCCCTCACCACCTAACTCTCCCGGT
GTGGTACACAATCACCGGGACCATCATGACAGTGACGACGACATGGAACA
GGAAGAAGAGCGTTTGCACGATAGCAGTGAGAAGCTTCGGAGCCTCATGA
TGATGCGCCGAGGTGCGGGACAGCGCAACGACGAGTATCAGGCAAAGTCA
TCGTCATTGGATCCAAATGCAAATGTGCCACGCCAGTTGATTTTTGATGC
AGTCGGTGCCACTTCTTCGTCATTGTGCCCTACATCCGCCCTTGACATCG
ACGTCTCTTCATCCTCGTCACCCCCCTCCTGTCCTTCCTCCTTGCACGGG
TACTCCACACCCCTTCGCTGCGCTCCGACCACCGATCCATCGTCATCCTT
GTCGGCTTCTTATAATGGTACAACTTCTACCTCGTCTTCGACTCCGGCTC
AACTGCAATATTGGGACTGTACTGACCATCAAAGGGAGGGCACGCCAATG
TCGCCAACCCGCACAGCGGGCTTTGCGACGCCACTTGCCTTGAAAACGCC
TGAACAAGAATCAATAATTGCGAGGAATGACGAGAAGGTGGAAAACTTGT
GCCTGCGTCGAGTGCCCTCTGCCTTTCCGCTGCCATCCGCAGGCGAGGAG
GATTTGGAGGTTCTTGGTGATGTTGCCGTGGATCGGAGAGCAGGGGGTGA
CGACAACGAAAACAGCACGGACATCATAAGGATTCAGGCGTCTAGTAGCA
TTGCCAGCAGTCTTGCTTCTATTATTAGCTGTCTCCCACCCGCGTCGAGC
ACCAGAGAACGAAGTGTTTGGGGCGAGGAGGACAAGGACATGCATGAGGT
AGGATGTGCCTCTAGGTGCCTGAGTGAGCTGTCGATCCAGCAGCGATTCT
TCGGTCTGAGGGATGTGGCTTCAGGTGAAAAATGCAACGATAAATCGTCT
TTCTCTGTCTCCAAGCATGTCATGGTTACATCGGCTTGGTGTCGGCACTT
GGCCTTCATTGCCCTACGGCCTGACGTTCCATGTGGCGACATAAGCGATC
TGGTCACTGAGGTGCTAAGGGAGCAGGGACTCATAGTCCGAAAGCGCCAA
GGTTCCCATATTGTGGGAGGGATGAAAGTGGTAGACAAGGAAGGACAGGA
AAAAGGTGGCATCTGTGGGAATGGAATTCAAGCGGAGTGGAGCTTTGTGG
ACATTCAGGTGGCATTGGATCGACAAGACAGGGAGCGCGTTTTACTTGTG
CGTTTCATTATTTCCACCGAGACGGAGGAGGGGGGCTATAACACCGATTG
CAAGAAGATCATGACACCGTCAATGGGGAGAAGATCGTCGGTAGCAGGTG
TGGAAGGAGGGAGTGATGAACAGGGAACTTTGTTGGAAGCGCTCAAGGCC
AAGCTGTTCGGCTCGGGTCTTAATAAAAGAGCACTGCTGCGGGATGTGGA
TGCTAATGTGAGCAGCAGTAGCAGCAGCAAATCTAGCAAGAGCATAACGC
TCGACCCTCAATACCTTCATCAGCTTGAAGACCTTGCTCGCGAAGATATG
CACAGGACTTTGGAAGCGACAGCACGAAATCTGGAGGAGTACGTATGCGC
CGCTGAAGAGAAATGCGAGCAACTCAGGTTATTGATGGAGCCCATGTATT
TGCAGTATAAGCTTGAGAAAGCCCCGTCAATCGCTAAGGCTTTGCCTTTG
TCATTCTACCCGCTAGACTTGCTTGCGGCTGATGGGACTATGGGAGGAGA
TGAGCAGATCAGCCTGGAGGAAAAAACACTTGTTGATGATCGGTTGGCAT
ACATCGATGCGTTAAAGGAGACGGCCTGGCGATGTTGCTTGATGCAATGT
GACGCTGAAATGACGGCACGCATGCAAAGGAAGAATTTGCAGGTCCTGGA
TCGTATGGCGAAGTGCACTGAATACCAGAGATTGCTAATTGCGAACTTGC
GCGATAATGAACGCAGGACATCTGTGCCGCTATTTCAAGCTTTTAAGAAT
CAGATTGGCCATGATGGTGGGATTTATGACGATGAGGATGTGGAGACGCC
CTTGTATTATTGTCGCTGCATAATTGGGAGCCGCCCCGCAACACTGTTCA
TGACTTACGAGCACTTAGCCTTTGTGAGCAATGTGCCTGGATTTGGGTGG
TCGCGTCAGATTCGCTATGATGAGATTTCAACGTGTGGATTGGCATCTCT
TCGGATTGGTATTACGCTGGCCAAAGCCATTGCAATCCGAGCTCCGACGG
CCAGAGTTGCTTCGCCCATGCCCGTAAAGAGGCCTGGTGGTGCCAGTGGC
AAGGCAGCCCCCCGCAGCAGCTGTAGTAGAAGTATTAGAACTAGTGCTGC
CGTTGCATCTAGAAAAGCCGAGGAGGAGTCGCTCGTCTTCAGCACCATGA
TCGAACCTGAGCGTTTGCTGGACCTCATTAAGTTGTTAATTACTCTCAAT
GACGAAAATATCAAGGACGCGGCCTCGATGGGCTCAGAACTTCCTTCGGA
AGAAGGACGACAGAATATCCAAGAGCAGGCTTCGTCGAATCTAGCGCGTG
AGCTGGAGGCAGCCTCGCCCTTTTTGGTGAATTAG back to topCoding sequence (CDS) from alignment at chr4:458765..461449- >NO04G01480.1 ID=NO04G01480.1|Name=NO04G01480.1|organism=Nannochloropsis oceanica|type=CDS|length=2685bp|location=Sequence derived from alignment at chr4:458765..461449- (Nannochloropsis oceanica) ATGATGGAGCCATCATCATCGCCGGCGACAAGTCCCTCGACTCCTTCAAC GCCCCTATTCACCATGGCCAAGGAGGACTTGCCGGCCCTCTTTTCCCAAA TGGAGGACGCCGTTGCCGCCCTGGAGCCCTCACCACCTAACTCTCCCGGT GTGGTACACAATCACCGGGACCATCATGACAGTGACGACGACATGGAACA GGAAGAAGAGCGTTTGCACGATAGCAGTGAGAAGCTTCGGAGCCTCATGA TGATGCGCCGAGGTGCGGGACAGCGCAACGACGAGTATCAGGCAAAGTCA TCGTCATTGGATCCAAATGCAAATGTGCCACGCCAGTTGATTTTTGATGC AGTCGGTGCCACTTCTTCGTCATTGTGCCCTACATCCGCCCTTGACATCG ACGTCTCTTCATCCTCGTCACCCCCCTCCTGTCCTTCCTCCTTGCACGGG TACTCCACACCCCTTCGCTGCGCTCCGACCACCGATCCATCGTCATCCTT GTCGGCTTCTTATAATGGTACAACTTCTACCTCGTCTTCGACTCCGGCTC AACTGCAATATTGGGACTGTACTGACCATCAAAGGGAGGGCACGCCAATG TCGCCAACCCGCACAGCGGGCTTTGCGACGCCACTTGCCTTGAAAACGCC TGAACAAGAATCAATAATTGCGAGGAATGACGAGAAGGTGGAAAACTTGT GCCTGCGTCGAGTGCCCTCTGCCTTTCCGCTGCCATCCGCAGGCGAGGAG GATTTGGAGGTTCTTGGTGATGTTGCCGTGGATCGGAGAGCAGGGGGTGA CGACAACGAAAACAGCACGGACATCATAAGGATTCAGGCGTCTAGTAGCA TTGCCAGCAGTCTTGCTTCTATTATTAGCTGTCTCCCACCCGCGTCGAGC ACCAGAGAACGAAGTGTTTGGGGCGAGGAGGACAAGGACATGCATGAGGT AGGATGTGCCTCTAGGTGCCTGAGTGAGCTGTCGATCCAGCAGCGATTCT TCGGTCTGAGGGATGTGGCTTCAGGTGAAAAATGCAACGATAAATCGTCT TTCTCTGTCTCCAAGCATGTCATGGTTACATCGGCTTGGTGTCGGCACTT GGCCTTCATTGCCCTACGGCCTGACGTTCCATGTGGCGACATAAGCGATC TGGTCACTGAGGTGCTAAGGGAGCAGGGACTCATAGTCCGAAAGCGCCAA GGTTCCCATATTGTGGGAGGGATGAAAGTGGTAGACAAGGAAGGACAGGA AAAAGGTGGCATCTGTGGGAATGGAATTCAAGCGGAGTGGAGCTTTGTGG ACATTCAGGTGGCATTGGATCGACAAGACAGGGAGCGCGTTTTACTTGTG CGTTTCATTATTTCCACCGAGACGGAGGAGGGGGGCTATAACACCGATTG CAAGAAGATCATGACACCGTCAATGGGGAGAAGATCGTCGGTAGCAGGTG TGGAAGGAGGGAGTGATGAACAGGGAACTTTGTTGGAAGCGCTCAAGGCC AAGCTGTTCGGCTCGGGTCTTAATAAAAGAGCACTGCTGCGGGATGTGGA TGCTAATGTGAGCAGCAGTAGCAGCAGCAAATCTAGCAAGAGCATAACGC TCGACCCTCAATACCTTCATCAGCTTGAAGACCTTGCTCGCGAAGATATG CACAGGACTTTGGAAGCGACAGCACGAAATCTGGAGGAGTACGTATGCGC CGCTGAAGAGAAATGCGAGCAACTCAGGTTATTGATGGAGCCCATGTATT TGCAGTATAAGCTTGAGAAAGCCCCGTCAATCGCTAAGGCTTTGCCTTTG TCATTCTACCCGCTAGACTTGCTTGCGGCTGATGGGACTATGGGAGGAGA TGAGCAGATCAGCCTGGAGGAAAAAACACTTGTTGATGATCGGTTGGCAT ACATCGATGCGTTAAAGGAGACGGCCTGGCGATGTTGCTTGATGCAATGT GACGCTGAAATGACGGCACGCATGCAAAGGAAGAATTTGCAGGTCCTGGA TCGTATGGCGAAGTGCACTGAATACCAGAGATTGCTAATTGCGAACTTGC GCGATAATGAACGCAGGACATCTGTGCCGCTATTTCAAGCTTTTAAGAAT CAGATTGGCCATGATGGTGGGATTTATGACGATGAGGATGTGGAGACGCC CTTGTATTATTGTCGCTGCATAATTGGGAGCCGCCCCGCAACACTGTTCA TGACTTACGAGCACTTAGCCTTTGTGAGCAATGTGCCTGGATTTGGGTGG TCGCGTCAGATTCGCTATGATGAGATTTCAACGTGTGGATTGGCATCTCT TCGGATTGGTATTACGCTGGCCAAAGCCATTGCAATCCGAGCTCCGACGG CCAGAGTTGCTTCGCCCATGCCCGTAAAGAGGCCTGGTGGTGCCAGTGGC AAGGCAGCCCCCCGCAGCAGCTGTAGTAGAAGTATTAGAACTAGTGCTGC CGTTGCATCTAGAAAAGCCGAGGAGGAGTCGCTCGTCTTCAGCACCATGA TCGAACCTGAGCGTTTGCTGGACCTCATTAAGTTGTTAATTACTCTCAAT GACGAAAATATCAAGGACGCGGCCTCGATGGGCTCAGAACTTCCTTCGGA AGAAGGACGACAGAATATCCAAGAGCAGGCTTCGTCGAATCTAGCGCGTG AGCTGGAGGCAGCCTCGCCCTTTTTGGTGAATTAG back to top
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