NO04G01480.1, NO04G01480.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO04G01480.1
Unique NameNO04G01480.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2685
Alignment locationchr4:458765..461449 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:458765..461449 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO04G01480.1 vs.
Match: EWM28525.1 (hypothetical protein Naga_100009g33 [Nannochloropsis gaditana])

HSP 1 Score: 270.4 bits (690), Expect = 2.000e-68
Identity = 133/262 (50.76%), Postives = 183/262 (69.85%), Query Frame = 0
Query:  534 LDPQYLHQLEDLAREDMHRTLEATARNLEEYVCAAEEKCEQLRLLMEPMYLQYKLEKAPSIAKALPLSFYPLDLLAADGTMGGDEQISLEEKTLVD---------------DRLAYIDALKETAWRCCLMQCDAEMTARMQRKNLQVLDRMAKCTEYQRLLIANLRDNERRTSVPLFQAFKNQIGHDGGIYDDEDVETPLYYCRCIIGSRPATLFMTYEHLAFVSNVPGFGWSRQIRYDEISTCGLASLRIGITLAKAIAIR 781
            LD  YL QLED+ARE+MH+ L+ T + LE+YV   E++C QL+  + PM+  YKL + P + + LPLS+YPL+LLAA       E+ S  +K+  +               D++ Y+DAL++ AWR  +MQCDAEMTA MQRKNLQ++DRM +C EYQ  L+  LRDN  RT+VPLF  FK QIGHDGG+++DE+VETPLYYCRCI+GSRPATLF+T+  + FVS V GF W+R++  D I++ G+  + +G+  AKAIA++
Sbjct:  144 LDRFYLRQLEDMAREEMHKALDGTIQQLEDYVLEKEKQCLQLKEFLMPMFTLYKLAEPPGLNEPLPLSYYPLNLLAACNQSARSEEESFADKSDHENVWAENQRPHRSGSLDKVTYMDALRDRAWRHNVMQCDAEMTACMQRKNLQIVDRMGRCNEYQLFLLETLRDNPFRTTVPLFHNFKYQIGHDGGVFEDEEVETPLYYCRCIVGSRPATLFITFTQITFVSKVCGFVWARRLPLDRITSHGMTYMHLGVKRAKAIALK 405          
The following BLAST results are available for this feature:
BLAST of NO04G01480.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28525.12.000e-6850.76hypothetical protein Naga_100009g33 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO04G01480NO04G01480Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO04G01480.1NO04G01480.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO04G01480.1.cds1NO04G01480.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO04G01480.1 ID=NO04G01480.1|Name=NO04G01480.1|organism=Nannochloropsis oceanica|type=mRNA|length=2685bp
ATGATGGAGCCATCATCATCGCCGGCGACAAGTCCCTCGACTCCTTCAAC
GCCCCTATTCACCATGGCCAAGGAGGACTTGCCGGCCCTCTTTTCCCAAA
TGGAGGACGCCGTTGCCGCCCTGGAGCCCTCACCACCTAACTCTCCCGGT
GTGGTACACAATCACCGGGACCATCATGACAGTGACGACGACATGGAACA
GGAAGAAGAGCGTTTGCACGATAGCAGTGAGAAGCTTCGGAGCCTCATGA
TGATGCGCCGAGGTGCGGGACAGCGCAACGACGAGTATCAGGCAAAGTCA
TCGTCATTGGATCCAAATGCAAATGTGCCACGCCAGTTGATTTTTGATGC
AGTCGGTGCCACTTCTTCGTCATTGTGCCCTACATCCGCCCTTGACATCG
ACGTCTCTTCATCCTCGTCACCCCCCTCCTGTCCTTCCTCCTTGCACGGG
TACTCCACACCCCTTCGCTGCGCTCCGACCACCGATCCATCGTCATCCTT
GTCGGCTTCTTATAATGGTACAACTTCTACCTCGTCTTCGACTCCGGCTC
AACTGCAATATTGGGACTGTACTGACCATCAAAGGGAGGGCACGCCAATG
TCGCCAACCCGCACAGCGGGCTTTGCGACGCCACTTGCCTTGAAAACGCC
TGAACAAGAATCAATAATTGCGAGGAATGACGAGAAGGTGGAAAACTTGT
GCCTGCGTCGAGTGCCCTCTGCCTTTCCGCTGCCATCCGCAGGCGAGGAG
GATTTGGAGGTTCTTGGTGATGTTGCCGTGGATCGGAGAGCAGGGGGTGA
CGACAACGAAAACAGCACGGACATCATAAGGATTCAGGCGTCTAGTAGCA
TTGCCAGCAGTCTTGCTTCTATTATTAGCTGTCTCCCACCCGCGTCGAGC
ACCAGAGAACGAAGTGTTTGGGGCGAGGAGGACAAGGACATGCATGAGGT
AGGATGTGCCTCTAGGTGCCTGAGTGAGCTGTCGATCCAGCAGCGATTCT
TCGGTCTGAGGGATGTGGCTTCAGGTGAAAAATGCAACGATAAATCGTCT
TTCTCTGTCTCCAAGCATGTCATGGTTACATCGGCTTGGTGTCGGCACTT
GGCCTTCATTGCCCTACGGCCTGACGTTCCATGTGGCGACATAAGCGATC
TGGTCACTGAGGTGCTAAGGGAGCAGGGACTCATAGTCCGAAAGCGCCAA
GGTTCCCATATTGTGGGAGGGATGAAAGTGGTAGACAAGGAAGGACAGGA
AAAAGGTGGCATCTGTGGGAATGGAATTCAAGCGGAGTGGAGCTTTGTGG
ACATTCAGGTGGCATTGGATCGACAAGACAGGGAGCGCGTTTTACTTGTG
CGTTTCATTATTTCCACCGAGACGGAGGAGGGGGGCTATAACACCGATTG
CAAGAAGATCATGACACCGTCAATGGGGAGAAGATCGTCGGTAGCAGGTG
TGGAAGGAGGGAGTGATGAACAGGGAACTTTGTTGGAAGCGCTCAAGGCC
AAGCTGTTCGGCTCGGGTCTTAATAAAAGAGCACTGCTGCGGGATGTGGA
TGCTAATGTGAGCAGCAGTAGCAGCAGCAAATCTAGCAAGAGCATAACGC
TCGACCCTCAATACCTTCATCAGCTTGAAGACCTTGCTCGCGAAGATATG
CACAGGACTTTGGAAGCGACAGCACGAAATCTGGAGGAGTACGTATGCGC
CGCTGAAGAGAAATGCGAGCAACTCAGGTTATTGATGGAGCCCATGTATT
TGCAGTATAAGCTTGAGAAAGCCCCGTCAATCGCTAAGGCTTTGCCTTTG
TCATTCTACCCGCTAGACTTGCTTGCGGCTGATGGGACTATGGGAGGAGA
TGAGCAGATCAGCCTGGAGGAAAAAACACTTGTTGATGATCGGTTGGCAT
ACATCGATGCGTTAAAGGAGACGGCCTGGCGATGTTGCTTGATGCAATGT
GACGCTGAAATGACGGCACGCATGCAAAGGAAGAATTTGCAGGTCCTGGA
TCGTATGGCGAAGTGCACTGAATACCAGAGATTGCTAATTGCGAACTTGC
GCGATAATGAACGCAGGACATCTGTGCCGCTATTTCAAGCTTTTAAGAAT
CAGATTGGCCATGATGGTGGGATTTATGACGATGAGGATGTGGAGACGCC
CTTGTATTATTGTCGCTGCATAATTGGGAGCCGCCCCGCAACACTGTTCA
TGACTTACGAGCACTTAGCCTTTGTGAGCAATGTGCCTGGATTTGGGTGG
TCGCGTCAGATTCGCTATGATGAGATTTCAACGTGTGGATTGGCATCTCT
TCGGATTGGTATTACGCTGGCCAAAGCCATTGCAATCCGAGCTCCGACGG
CCAGAGTTGCTTCGCCCATGCCCGTAAAGAGGCCTGGTGGTGCCAGTGGC
AAGGCAGCCCCCCGCAGCAGCTGTAGTAGAAGTATTAGAACTAGTGCTGC
CGTTGCATCTAGAAAAGCCGAGGAGGAGTCGCTCGTCTTCAGCACCATGA
TCGAACCTGAGCGTTTGCTGGACCTCATTAAGTTGTTAATTACTCTCAAT
GACGAAAATATCAAGGACGCGGCCTCGATGGGCTCAGAACTTCCTTCGGA
AGAAGGACGACAGAATATCCAAGAGCAGGCTTCGTCGAATCTAGCGCGTG
AGCTGGAGGCAGCCTCGCCCTTTTTGGTGAATTAG
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protein sequence of NO04G01480.1

>NO04G01480.1-protein ID=NO04G01480.1-protein|Name=NO04G01480.1|organism=Nannochloropsis oceanica|type=polypeptide|length=895bp
MMEPSSSPATSPSTPSTPLFTMAKEDLPALFSQMEDAVAALEPSPPNSPG
VVHNHRDHHDSDDDMEQEEERLHDSSEKLRSLMMMRRGAGQRNDEYQAKS
SSLDPNANVPRQLIFDAVGATSSSLCPTSALDIDVSSSSSPPSCPSSLHG
YSTPLRCAPTTDPSSSLSASYNGTTSTSSSTPAQLQYWDCTDHQREGTPM
SPTRTAGFATPLALKTPEQESIIARNDEKVENLCLRRVPSAFPLPSAGEE
DLEVLGDVAVDRRAGGDDNENSTDIIRIQASSSIASSLASIISCLPPASS
TRERSVWGEEDKDMHEVGCASRCLSELSIQQRFFGLRDVASGEKCNDKSS
FSVSKHVMVTSAWCRHLAFIALRPDVPCGDISDLVTEVLREQGLIVRKRQ
GSHIVGGMKVVDKEGQEKGGICGNGIQAEWSFVDIQVALDRQDRERVLLV
RFIISTETEEGGYNTDCKKIMTPSMGRRSSVAGVEGGSDEQGTLLEALKA
KLFGSGLNKRALLRDVDANVSSSSSSKSSKSITLDPQYLHQLEDLAREDM
HRTLEATARNLEEYVCAAEEKCEQLRLLMEPMYLQYKLEKAPSIAKALPL
SFYPLDLLAADGTMGGDEQISLEEKTLVDDRLAYIDALKETAWRCCLMQC
DAEMTARMQRKNLQVLDRMAKCTEYQRLLIANLRDNERRTSVPLFQAFKN
QIGHDGGIYDDEDVETPLYYCRCIIGSRPATLFMTYEHLAFVSNVPGFGW
SRQIRYDEISTCGLASLRIGITLAKAIAIRAPTARVASPMPVKRPGGASG
KAAPRSSCSRSIRTSAAVASRKAEEESLVFSTMIEPERLLDLIKLLITLN
DENIKDAASMGSELPSEEGRQNIQEQASSNLARELEAASPFLVN*
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mRNA from alignment at chr4:458765..461449-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO04G01480.1 ID=NO04G01480.1|Name=NO04G01480.1|organism=Nannochloropsis oceanica|type=mRNA|length=2685bp|location=Sequence derived from alignment at chr4:458765..461449- (Nannochloropsis oceanica)
ATGATGGAGCCATCATCATCGCCGGCGACAAGTCCCTCGACTCCTTCAAC GCCCCTATTCACCATGGCCAAGGAGGACTTGCCGGCCCTCTTTTCCCAAA TGGAGGACGCCGTTGCCGCCCTGGAGCCCTCACCACCTAACTCTCCCGGT GTGGTACACAATCACCGGGACCATCATGACAGTGACGACGACATGGAACA GGAAGAAGAGCGTTTGCACGATAGCAGTGAGAAGCTTCGGAGCCTCATGA TGATGCGCCGAGGTGCGGGACAGCGCAACGACGAGTATCAGGCAAAGTCA TCGTCATTGGATCCAAATGCAAATGTGCCACGCCAGTTGATTTTTGATGC AGTCGGTGCCACTTCTTCGTCATTGTGCCCTACATCCGCCCTTGACATCG ACGTCTCTTCATCCTCGTCACCCCCCTCCTGTCCTTCCTCCTTGCACGGG TACTCCACACCCCTTCGCTGCGCTCCGACCACCGATCCATCGTCATCCTT GTCGGCTTCTTATAATGGTACAACTTCTACCTCGTCTTCGACTCCGGCTC AACTGCAATATTGGGACTGTACTGACCATCAAAGGGAGGGCACGCCAATG TCGCCAACCCGCACAGCGGGCTTTGCGACGCCACTTGCCTTGAAAACGCC TGAACAAGAATCAATAATTGCGAGGAATGACGAGAAGGTGGAAAACTTGT GCCTGCGTCGAGTGCCCTCTGCCTTTCCGCTGCCATCCGCAGGCGAGGAG GATTTGGAGGTTCTTGGTGATGTTGCCGTGGATCGGAGAGCAGGGGGTGA CGACAACGAAAACAGCACGGACATCATAAGGATTCAGGCGTCTAGTAGCA TTGCCAGCAGTCTTGCTTCTATTATTAGCTGTCTCCCACCCGCGTCGAGC ACCAGAGAACGAAGTGTTTGGGGCGAGGAGGACAAGGACATGCATGAGGT AGGATGTGCCTCTAGGTGCCTGAGTGAGCTGTCGATCCAGCAGCGATTCT TCGGTCTGAGGGATGTGGCTTCAGGTGAAAAATGCAACGATAAATCGTCT TTCTCTGTCTCCAAGCATGTCATGGTTACATCGGCTTGGTGTCGGCACTT GGCCTTCATTGCCCTACGGCCTGACGTTCCATGTGGCGACATAAGCGATC TGGTCACTGAGGTGCTAAGGGAGCAGGGACTCATAGTCCGAAAGCGCCAA GGTTCCCATATTGTGGGAGGGATGAAAGTGGTAGACAAGGAAGGACAGGA AAAAGGTGGCATCTGTGGGAATGGAATTCAAGCGGAGTGGAGCTTTGTGG ACATTCAGGTGGCATTGGATCGACAAGACAGGGAGCGCGTTTTACTTGTG CGTTTCATTATTTCCACCGAGACGGAGGAGGGGGGCTATAACACCGATTG CAAGAAGATCATGACACCGTCAATGGGGAGAAGATCGTCGGTAGCAGGTG TGGAAGGAGGGAGTGATGAACAGGGAACTTTGTTGGAAGCGCTCAAGGCC AAGCTGTTCGGCTCGGGTCTTAATAAAAGAGCACTGCTGCGGGATGTGGA TGCTAATGTGAGCAGCAGTAGCAGCAGCAAATCTAGCAAGAGCATAACGC TCGACCCTCAATACCTTCATCAGCTTGAAGACCTTGCTCGCGAAGATATG CACAGGACTTTGGAAGCGACAGCACGAAATCTGGAGGAGTACGTATGCGC CGCTGAAGAGAAATGCGAGCAACTCAGGTTATTGATGGAGCCCATGTATT TGCAGTATAAGCTTGAGAAAGCCCCGTCAATCGCTAAGGCTTTGCCTTTG TCATTCTACCCGCTAGACTTGCTTGCGGCTGATGGGACTATGGGAGGAGA TGAGCAGATCAGCCTGGAGGAAAAAACACTTGTTGATGATCGGTTGGCAT ACATCGATGCGTTAAAGGAGACGGCCTGGCGATGTTGCTTGATGCAATGT GACGCTGAAATGACGGCACGCATGCAAAGGAAGAATTTGCAGGTCCTGGA TCGTATGGCGAAGTGCACTGAATACCAGAGATTGCTAATTGCGAACTTGC GCGATAATGAACGCAGGACATCTGTGCCGCTATTTCAAGCTTTTAAGAAT CAGATTGGCCATGATGGTGGGATTTATGACGATGAGGATGTGGAGACGCC CTTGTATTATTGTCGCTGCATAATTGGGAGCCGCCCCGCAACACTGTTCA TGACTTACGAGCACTTAGCCTTTGTGAGCAATGTGCCTGGATTTGGGTGG TCGCGTCAGATTCGCTATGATGAGATTTCAACGTGTGGATTGGCATCTCT TCGGATTGGTATTACGCTGGCCAAAGCCATTGCAATCCGAGCTCCGACGG CCAGAGTTGCTTCGCCCATGCCCGTAAAGAGGCCTGGTGGTGCCAGTGGC AAGGCAGCCCCCCGCAGCAGCTGTAGTAGAAGTATTAGAACTAGTGCTGC CGTTGCATCTAGAAAAGCCGAGGAGGAGTCGCTCGTCTTCAGCACCATGA TCGAACCTGAGCGTTTGCTGGACCTCATTAAGTTGTTAATTACTCTCAAT GACGAAAATATCAAGGACGCGGCCTCGATGGGCTCAGAACTTCCTTCGGA AGAAGGACGACAGAATATCCAAGAGCAGGCTTCGTCGAATCTAGCGCGTG AGCTGGAGGCAGCCTCGCCCTTTTTGGTGAATTAG
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Coding sequence (CDS) from alignment at chr4:458765..461449-

>NO04G01480.1 ID=NO04G01480.1|Name=NO04G01480.1|organism=Nannochloropsis oceanica|type=CDS|length=2685bp|location=Sequence derived from alignment at chr4:458765..461449- (Nannochloropsis oceanica)
ATGATGGAGCCATCATCATCGCCGGCGACAAGTCCCTCGACTCCTTCAAC
GCCCCTATTCACCATGGCCAAGGAGGACTTGCCGGCCCTCTTTTCCCAAA
TGGAGGACGCCGTTGCCGCCCTGGAGCCCTCACCACCTAACTCTCCCGGT
GTGGTACACAATCACCGGGACCATCATGACAGTGACGACGACATGGAACA
GGAAGAAGAGCGTTTGCACGATAGCAGTGAGAAGCTTCGGAGCCTCATGA
TGATGCGCCGAGGTGCGGGACAGCGCAACGACGAGTATCAGGCAAAGTCA
TCGTCATTGGATCCAAATGCAAATGTGCCACGCCAGTTGATTTTTGATGC
AGTCGGTGCCACTTCTTCGTCATTGTGCCCTACATCCGCCCTTGACATCG
ACGTCTCTTCATCCTCGTCACCCCCCTCCTGTCCTTCCTCCTTGCACGGG
TACTCCACACCCCTTCGCTGCGCTCCGACCACCGATCCATCGTCATCCTT
GTCGGCTTCTTATAATGGTACAACTTCTACCTCGTCTTCGACTCCGGCTC
AACTGCAATATTGGGACTGTACTGACCATCAAAGGGAGGGCACGCCAATG
TCGCCAACCCGCACAGCGGGCTTTGCGACGCCACTTGCCTTGAAAACGCC
TGAACAAGAATCAATAATTGCGAGGAATGACGAGAAGGTGGAAAACTTGT
GCCTGCGTCGAGTGCCCTCTGCCTTTCCGCTGCCATCCGCAGGCGAGGAG
GATTTGGAGGTTCTTGGTGATGTTGCCGTGGATCGGAGAGCAGGGGGTGA
CGACAACGAAAACAGCACGGACATCATAAGGATTCAGGCGTCTAGTAGCA
TTGCCAGCAGTCTTGCTTCTATTATTAGCTGTCTCCCACCCGCGTCGAGC
ACCAGAGAACGAAGTGTTTGGGGCGAGGAGGACAAGGACATGCATGAGGT
AGGATGTGCCTCTAGGTGCCTGAGTGAGCTGTCGATCCAGCAGCGATTCT
TCGGTCTGAGGGATGTGGCTTCAGGTGAAAAATGCAACGATAAATCGTCT
TTCTCTGTCTCCAAGCATGTCATGGTTACATCGGCTTGGTGTCGGCACTT
GGCCTTCATTGCCCTACGGCCTGACGTTCCATGTGGCGACATAAGCGATC
TGGTCACTGAGGTGCTAAGGGAGCAGGGACTCATAGTCCGAAAGCGCCAA
GGTTCCCATATTGTGGGAGGGATGAAAGTGGTAGACAAGGAAGGACAGGA
AAAAGGTGGCATCTGTGGGAATGGAATTCAAGCGGAGTGGAGCTTTGTGG
ACATTCAGGTGGCATTGGATCGACAAGACAGGGAGCGCGTTTTACTTGTG
CGTTTCATTATTTCCACCGAGACGGAGGAGGGGGGCTATAACACCGATTG
CAAGAAGATCATGACACCGTCAATGGGGAGAAGATCGTCGGTAGCAGGTG
TGGAAGGAGGGAGTGATGAACAGGGAACTTTGTTGGAAGCGCTCAAGGCC
AAGCTGTTCGGCTCGGGTCTTAATAAAAGAGCACTGCTGCGGGATGTGGA
TGCTAATGTGAGCAGCAGTAGCAGCAGCAAATCTAGCAAGAGCATAACGC
TCGACCCTCAATACCTTCATCAGCTTGAAGACCTTGCTCGCGAAGATATG
CACAGGACTTTGGAAGCGACAGCACGAAATCTGGAGGAGTACGTATGCGC
CGCTGAAGAGAAATGCGAGCAACTCAGGTTATTGATGGAGCCCATGTATT
TGCAGTATAAGCTTGAGAAAGCCCCGTCAATCGCTAAGGCTTTGCCTTTG
TCATTCTACCCGCTAGACTTGCTTGCGGCTGATGGGACTATGGGAGGAGA
TGAGCAGATCAGCCTGGAGGAAAAAACACTTGTTGATGATCGGTTGGCAT
ACATCGATGCGTTAAAGGAGACGGCCTGGCGATGTTGCTTGATGCAATGT
GACGCTGAAATGACGGCACGCATGCAAAGGAAGAATTTGCAGGTCCTGGA
TCGTATGGCGAAGTGCACTGAATACCAGAGATTGCTAATTGCGAACTTGC
GCGATAATGAACGCAGGACATCTGTGCCGCTATTTCAAGCTTTTAAGAAT
CAGATTGGCCATGATGGTGGGATTTATGACGATGAGGATGTGGAGACGCC
CTTGTATTATTGTCGCTGCATAATTGGGAGCCGCCCCGCAACACTGTTCA
TGACTTACGAGCACTTAGCCTTTGTGAGCAATGTGCCTGGATTTGGGTGG
TCGCGTCAGATTCGCTATGATGAGATTTCAACGTGTGGATTGGCATCTCT
TCGGATTGGTATTACGCTGGCCAAAGCCATTGCAATCCGAGCTCCGACGG
CCAGAGTTGCTTCGCCCATGCCCGTAAAGAGGCCTGGTGGTGCCAGTGGC
AAGGCAGCCCCCCGCAGCAGCTGTAGTAGAAGTATTAGAACTAGTGCTGC
CGTTGCATCTAGAAAAGCCGAGGAGGAGTCGCTCGTCTTCAGCACCATGA
TCGAACCTGAGCGTTTGCTGGACCTCATTAAGTTGTTAATTACTCTCAAT
GACGAAAATATCAAGGACGCGGCCTCGATGGGCTCAGAACTTCCTTCGGA
AGAAGGACGACAGAATATCCAAGAGCAGGCTTCGTCGAATCTAGCGCGTG
AGCTGGAGGCAGCCTCGCCCTTTTTGGTGAATTAG
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Synonyms
Publications