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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr4 | genome | chr4:457186..458571 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO04G01470.1 vs.
Match: XP_005856067.1 (hypothetical protein NGA_2017900, partial [Nannochloropsis gaditana CCMP526]; EKU20288.1 hypothetical protein NGA_2017900, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 685.6 bits (1768), Expect = 1.000e-193 Identity = 335/430 (77.91%), Postives = 376/430 (87.44%), Query Frame = 0
Query: 28 HSHLHLQDHRHQQQDPPAAATVNINHGQHQSSEQEQELQH---QGSDGHPRLIKIVLTGGPCGGKTTALARLSEFFRTHGFRVFTVPEAATMLWSNGVALSDVLASEETQYWFQDTVLEFQMHLENGVEKIARSLNKPAVILCDRGTLDGAAYVTKDMWETLLKRKGLELLSIREGRYDAVFHLVTAATGAELYYSLMNNETRTESPEFAREVDLKTQGVWNGHPKHFVIDNSTDFEGKLARVQNQAARLVGLPQLPRGADRWYLRRPHDPACFTVPYEKTQVRKVYLVNVGKALPDGRNVSVEYNYVEERSQDGSVAYAHTSKQRLDDGYEAELKRIIDEREFHFRATTMADPSRKEVFQTRYSFLWAQQAFVVIDHHSD-KQEFGHDLFTLRRQAEGGTPEFPPFLDVGEHIEDEDGLFPFPTRPAPS 454
H H H Q +N + +S+EQ QH + SDG PRLIKIVLTGGPCGGKTT+LARLSEFFRTHGFRVFTVPEAAT LWSNGVAL+D+L S ETQYWFQD VL+FQ+HLE+G+E+IARSL +P+VILCDRGTLDGAAYV+K++WE L+K+KGLELLSIREGRYDA+FHLVTAA GAE +YSL+NN TRTESPEFAREVD+KTQGVWNGHP+H+VIDNSTDFEGKLARVQ++AARLVGLPQLPRGADRW+LR+ P FTVP+EKTQVRKVYL+NVG+ LPDGR VSVEYNYVEERSQDGSVAYAHTSKQRLDDG+EAELKRIID REF+ R+TTMADPSRKEVFQTRYSFLWAQQAFVVI HHSD K +FG +LFTLRRQA+GG PEFPPFLDVGEHIEDEDGLFPFPTRP+P+
Sbjct: 43 HLHDHTQSRNRVTNGDVNDKRLNQDGAGQESTEQAHHQQHGPHKDSDGRPRLIKIVLTGGPCGGKTTSLARLSEFFRTHGFRVFTVPEAATTLWSNGVALADILGSNETQYWFQDAVLDFQIHLEDGMERIARSLGRPSVILCDRGTLDGAAYVSKELWEELVKKKGLELLSIREGRYDAIFHLVTAAMGAEPFYSLLNNVTRTESPEFAREVDMKTQGVWNGHPRHYVIDNSTDFEGKLARVQDEAARLVGLPQLPRGADRWFLRKKPKPDSFTVPFEKTQVRKVYLMNVGRPLPDGRKVSVEYNYVEERSQDGSVAYAHTSKQRLDDGHEAELKRIIDAREFYSRSTTMADPSRKEVFQTRYSFLWAQQAFVVIHHHSDAKTKFGPELFTLRRQAKGGIPEFPPFLDVGEHIEDEDGLFPFPTRPSPT 472
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO04G01470.1 ID=NO04G01470.1|Name=NO04G01470.1|organism=Nannochloropsis oceanica|type=mRNA|length=1386bp ATGGCAGGTCCTCCATCTCCACCAATAGAGCAAGTGGCAGCAGTGACGTC AAATGTCACCCATCCTGGGCCTTCTGCCATGCACAGCCACCTCCACCTTC AGGACCACCGCCATCAACAACAAGACCCGCCCGCTGCCGCAACGGTCAAT ATCAATCATGGCCAGCACCAGTCCTCAGAGCAGGAGCAAGAGCTACAGCA CCAAGGCAGCGACGGTCATCCTCGGCTAATCAAAATTGTTCTCACGGGCG GGCCCTGCGGAGGGAAAACTACGGCACTCGCGCGCTTGTCGGAATTCTTT CGCACCCACGGCTTTCGTGTCTTTACAGTCCCAGAGGCTGCTACTATGCT TTGGTCGAATGGCGTTGCCTTGTCAGATGTCCTGGCCTCGGAAGAAACTC AGTATTGGTTTCAAGACACCGTGTTGGAGTTCCAGATGCATTTGGAGAAT GGGGTAGAGAAGATTGCGCGGTCCTTGAACAAGCCGGCAGTAATACTGTG TGATCGCGGCACATTGGACGGGGCAGCGTATGTGACTAAGGACATGTGGG AGACCTTGTTGAAGAGAAAAGGGCTTGAACTTTTGTCGATTCGGGAGGGG AGGTATGATGCGGTATTTCATTTGGTTACGGCTGCGACGGGTGCGGAGCT TTATTATTCGCTTATGAACAATGAGACTCGAACGGAGTCGCCCGAATTTG CGCGCGAAGTGGATTTGAAGACGCAAGGCGTGTGGAATGGGCATCCGAAG CATTTTGTGATTGACAACTCTACGGACTTTGAAGGGAAGTTGGCGCGAGT GCAGAACCAAGCTGCTCGGCTTGTAGGCTTGCCGCAATTGCCCCGTGGCG CAGATCGTTGGTACCTGCGCCGGCCACATGACCCAGCATGCTTCACAGTG CCGTACGAGAAGACGCAAGTCCGCAAGGTGTATTTGGTCAATGTAGGGAA GGCTTTGCCGGATGGGAGGAATGTAAGCGTTGAGTACAACTATGTTGAAG AGAGGTCGCAAGATGGTTCGGTAGCCTACGCACACACGAGCAAGCAGCGC CTGGATGATGGATATGAGGCCGAGTTGAAGCGCATCATCGATGAGCGGGA GTTTCACTTCCGTGCCACGACTATGGCGGACCCGTCGCGAAAGGAAGTGT TTCAAACGCGTTACTCCTTCTTGTGGGCGCAGCAGGCTTTTGTGGTCATT GATCACCATTCGGACAAACAGGAGTTTGGTCATGATCTATTTACGCTTCG GCGGCAGGCTGAGGGAGGCACGCCGGAGTTCCCGCCTTTTTTGGATGTGG GAGAGCACATTGAGGATGAAGACGGGCTATTCCCTTTTCCAACGCGCCCG GCACCGTCACCCGTGAAGAAGGAGACAGTAGTCTAG back to topprotein sequence of NO04G01470.1 >NO04G01470.1-protein ID=NO04G01470.1-protein|Name=NO04G01470.1|organism=Nannochloropsis oceanica|type=polypeptide|length=462bp MAGPPSPPIEQVAAVTSNVTHPGPSAMHSHLHLQDHRHQQQDPPAAATVN INHGQHQSSEQEQELQHQGSDGHPRLIKIVLTGGPCGGKTTALARLSEFF RTHGFRVFTVPEAATMLWSNGVALSDVLASEETQYWFQDTVLEFQMHLEN GVEKIARSLNKPAVILCDRGTLDGAAYVTKDMWETLLKRKGLELLSIREG RYDAVFHLVTAATGAELYYSLMNNETRTESPEFAREVDLKTQGVWNGHPK HFVIDNSTDFEGKLARVQNQAARLVGLPQLPRGADRWYLRRPHDPACFTV PYEKTQVRKVYLVNVGKALPDGRNVSVEYNYVEERSQDGSVAYAHTSKQR LDDGYEAELKRIIDEREFHFRATTMADPSRKEVFQTRYSFLWAQQAFVVI DHHSDKQEFGHDLFTLRRQAEGGTPEFPPFLDVGEHIEDEDGLFPFPTRP APSPVKKETVV* back to topmRNA from alignment at chr4:457186..458571+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO04G01470.1 ID=NO04G01470.1|Name=NO04G01470.1|organism=Nannochloropsis oceanica|type=mRNA|length=1386bp|location=Sequence derived from alignment at chr4:457186..458571+ (Nannochloropsis oceanica) ATGGCAGGTCCTCCATCTCCACCAATAGAGCAAGTGGCAGCAGTGACGTC
AAATGTCACCCATCCTGGGCCTTCTGCCATGCACAGCCACCTCCACCTTC
AGGACCACCGCCATCAACAACAAGACCCGCCCGCTGCCGCAACGGTCAAT
ATCAATCATGGCCAGCACCAGTCCTCAGAGCAGGAGCAAGAGCTACAGCA
CCAAGGCAGCGACGGTCATCCTCGGCTAATCAAAATTGTTCTCACGGGCG
GGCCCTGCGGAGGGAAAACTACGGCACTCGCGCGCTTGTCGGAATTCTTT
CGCACCCACGGCTTTCGTGTCTTTACAGTCCCAGAGGCTGCTACTATGCT
TTGGTCGAATGGCGTTGCCTTGTCAGATGTCCTGGCCTCGGAAGAAACTC
AGTATTGGTTTCAAGACACCGTGTTGGAGTTCCAGATGCATTTGGAGAAT
GGGGTAGAGAAGATTGCGCGGTCCTTGAACAAGCCGGCAGTAATACTGTG
TGATCGCGGCACATTGGACGGGGCAGCGTATGTGACTAAGGACATGTGGG
AGACCTTGTTGAAGAGAAAAGGGCTTGAACTTTTGTCGATTCGGGAGGGG
AGGTATGATGCGGTATTTCATTTGGTTACGGCTGCGACGGGTGCGGAGCT
TTATTATTCGCTTATGAACAATGAGACTCGAACGGAGTCGCCCGAATTTG
CGCGCGAAGTGGATTTGAAGACGCAAGGCGTGTGGAATGGGCATCCGAAG
CATTTTGTGATTGACAACTCTACGGACTTTGAAGGGAAGTTGGCGCGAGT
GCAGAACCAAGCTGCTCGGCTTGTAGGCTTGCCGCAATTGCCCCGTGGCG
CAGATCGTTGGTACCTGCGCCGGCCACATGACCCAGCATGCTTCACAGTG
CCGTACGAGAAGACGCAAGTCCGCAAGGTGTATTTGGTCAATGTAGGGAA
GGCTTTGCCGGATGGGAGGAATGTAAGCGTTGAGTACAACTATGTTGAAG
AGAGGTCGCAAGATGGTTCGGTAGCCTACGCACACACGAGCAAGCAGCGC
CTGGATGATGGATATGAGGCCGAGTTGAAGCGCATCATCGATGAGCGGGA
GTTTCACTTCCGTGCCACGACTATGGCGGACCCGTCGCGAAAGGAAGTGT
TTCAAACGCGTTACTCCTTCTTGTGGGCGCAGCAGGCTTTTGTGGTCATT
GATCACCATTCGGACAAACAGGAGTTTGGTCATGATCTATTTACGCTTCG
GCGGCAGGCTGAGGGAGGCACGCCGGAGTTCCCGCCTTTTTTGGATGTGG
GAGAGCACATTGAGGATGAAGACGGGCTATTCCCTTTTCCAACGCGCCCG
GCACCGTCACCCGTGAAGAAGGAGACAGTAGTCTAG back to topCoding sequence (CDS) from alignment at chr4:457186..458571+ >NO04G01470.1 ID=NO04G01470.1|Name=NO04G01470.1|organism=Nannochloropsis oceanica|type=CDS|length=1386bp|location=Sequence derived from alignment at chr4:457186..458571+ (Nannochloropsis oceanica) ATGGCAGGTCCTCCATCTCCACCAATAGAGCAAGTGGCAGCAGTGACGTC AAATGTCACCCATCCTGGGCCTTCTGCCATGCACAGCCACCTCCACCTTC AGGACCACCGCCATCAACAACAAGACCCGCCCGCTGCCGCAACGGTCAAT ATCAATCATGGCCAGCACCAGTCCTCAGAGCAGGAGCAAGAGCTACAGCA CCAAGGCAGCGACGGTCATCCTCGGCTAATCAAAATTGTTCTCACGGGCG GGCCCTGCGGAGGGAAAACTACGGCACTCGCGCGCTTGTCGGAATTCTTT CGCACCCACGGCTTTCGTGTCTTTACAGTCCCAGAGGCTGCTACTATGCT TTGGTCGAATGGCGTTGCCTTGTCAGATGTCCTGGCCTCGGAAGAAACTC AGTATTGGTTTCAAGACACCGTGTTGGAGTTCCAGATGCATTTGGAGAAT GGGGTAGAGAAGATTGCGCGGTCCTTGAACAAGCCGGCAGTAATACTGTG TGATCGCGGCACATTGGACGGGGCAGCGTATGTGACTAAGGACATGTGGG AGACCTTGTTGAAGAGAAAAGGGCTTGAACTTTTGTCGATTCGGGAGGGG AGGTATGATGCGGTATTTCATTTGGTTACGGCTGCGACGGGTGCGGAGCT TTATTATTCGCTTATGAACAATGAGACTCGAACGGAGTCGCCCGAATTTG CGCGCGAAGTGGATTTGAAGACGCAAGGCGTGTGGAATGGGCATCCGAAG CATTTTGTGATTGACAACTCTACGGACTTTGAAGGGAAGTTGGCGCGAGT GCAGAACCAAGCTGCTCGGCTTGTAGGCTTGCCGCAATTGCCCCGTGGCG CAGATCGTTGGTACCTGCGCCGGCCACATGACCCAGCATGCTTCACAGTG CCGTACGAGAAGACGCAAGTCCGCAAGGTGTATTTGGTCAATGTAGGGAA GGCTTTGCCGGATGGGAGGAATGTAAGCGTTGAGTACAACTATGTTGAAG AGAGGTCGCAAGATGGTTCGGTAGCCTACGCACACACGAGCAAGCAGCGC CTGGATGATGGATATGAGGCCGAGTTGAAGCGCATCATCGATGAGCGGGA GTTTCACTTCCGTGCCACGACTATGGCGGACCCGTCGCGAAAGGAAGTGT TTCAAACGCGTTACTCCTTCTTGTGGGCGCAGCAGGCTTTTGTGGTCATT GATCACCATTCGGACAAACAGGAGTTTGGTCATGATCTATTTACGCTTCG GCGGCAGGCTGAGGGAGGCACGCCGGAGTTCCCGCCTTTTTTGGATGTGG GAGAGCACATTGAGGATGAAGACGGGCTATTCCCTTTTCCAACGCGCCCG GCACCGTCACCCGTGAAGAAGGAGACAGTAGTCTAG back to top
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