NO04G01470.1, NO04G01470.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO04G01470.1
Unique NameNO04G01470.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1386
Alignment locationchr4:457186..458571 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:457186..458571 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO04G01470.1 vs.
Match: XP_005856067.1 (hypothetical protein NGA_2017900, partial [Nannochloropsis gaditana CCMP526]; EKU20288.1 hypothetical protein NGA_2017900, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 685.6 bits (1768), Expect = 1.000e-193
Identity = 335/430 (77.91%), Postives = 376/430 (87.44%), Query Frame = 0
Query:   28 HSHLHLQDHRHQQQDPPAAATVNINHGQHQSSEQEQELQH---QGSDGHPRLIKIVLTGGPCGGKTTALARLSEFFRTHGFRVFTVPEAATMLWSNGVALSDVLASEETQYWFQDTVLEFQMHLENGVEKIARSLNKPAVILCDRGTLDGAAYVTKDMWETLLKRKGLELLSIREGRYDAVFHLVTAATGAELYYSLMNNETRTESPEFAREVDLKTQGVWNGHPKHFVIDNSTDFEGKLARVQNQAARLVGLPQLPRGADRWYLRRPHDPACFTVPYEKTQVRKVYLVNVGKALPDGRNVSVEYNYVEERSQDGSVAYAHTSKQRLDDGYEAELKRIIDEREFHFRATTMADPSRKEVFQTRYSFLWAQQAFVVIDHHSD-KQEFGHDLFTLRRQAEGGTPEFPPFLDVGEHIEDEDGLFPFPTRPAPS 454
            H H H Q              +N +    +S+EQ    QH   + SDG PRLIKIVLTGGPCGGKTT+LARLSEFFRTHGFRVFTVPEAAT LWSNGVAL+D+L S ETQYWFQD VL+FQ+HLE+G+E+IARSL +P+VILCDRGTLDGAAYV+K++WE L+K+KGLELLSIREGRYDA+FHLVTAA GAE +YSL+NN TRTESPEFAREVD+KTQGVWNGHP+H+VIDNSTDFEGKLARVQ++AARLVGLPQLPRGADRW+LR+   P  FTVP+EKTQVRKVYL+NVG+ LPDGR VSVEYNYVEERSQDGSVAYAHTSKQRLDDG+EAELKRIID REF+ R+TTMADPSRKEVFQTRYSFLWAQQAFVVI HHSD K +FG +LFTLRRQA+GG PEFPPFLDVGEHIEDEDGLFPFPTRP+P+
Sbjct:   43 HLHDHTQSRNRVTNGDVNDKRLNQDGAGQESTEQAHHQQHGPHKDSDGRPRLIKIVLTGGPCGGKTTSLARLSEFFRTHGFRVFTVPEAATTLWSNGVALADILGSNETQYWFQDAVLDFQIHLEDGMERIARSLGRPSVILCDRGTLDGAAYVSKELWEELVKKKGLELLSIREGRYDAIFHLVTAAMGAEPFYSLLNNVTRTESPEFAREVDMKTQGVWNGHPRHYVIDNSTDFEGKLARVQDEAARLVGLPQLPRGADRWFLRKKPKPDSFTVPFEKTQVRKVYLMNVGRPLPDGRKVSVEYNYVEERSQDGSVAYAHTSKQRLDDGHEAELKRIIDAREFYSRSTTMADPSRKEVFQTRYSFLWAQQAFVVIHHHSDAKTKFGPELFTLRRQAKGGIPEFPPFLDVGEHIEDEDGLFPFPTRPSPT 472          
The following BLAST results are available for this feature:
BLAST of NO04G01470.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005856067.11.000e-19377.91hypothetical protein NGA_2017900, partial [Nannoch... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO04G01470NO04G01470Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO04G01470.1NO04G01470.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO04G01470.1.cds1NO04G01470.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO04G01470.1 ID=NO04G01470.1|Name=NO04G01470.1|organism=Nannochloropsis oceanica|type=mRNA|length=1386bp
ATGGCAGGTCCTCCATCTCCACCAATAGAGCAAGTGGCAGCAGTGACGTC
AAATGTCACCCATCCTGGGCCTTCTGCCATGCACAGCCACCTCCACCTTC
AGGACCACCGCCATCAACAACAAGACCCGCCCGCTGCCGCAACGGTCAAT
ATCAATCATGGCCAGCACCAGTCCTCAGAGCAGGAGCAAGAGCTACAGCA
CCAAGGCAGCGACGGTCATCCTCGGCTAATCAAAATTGTTCTCACGGGCG
GGCCCTGCGGAGGGAAAACTACGGCACTCGCGCGCTTGTCGGAATTCTTT
CGCACCCACGGCTTTCGTGTCTTTACAGTCCCAGAGGCTGCTACTATGCT
TTGGTCGAATGGCGTTGCCTTGTCAGATGTCCTGGCCTCGGAAGAAACTC
AGTATTGGTTTCAAGACACCGTGTTGGAGTTCCAGATGCATTTGGAGAAT
GGGGTAGAGAAGATTGCGCGGTCCTTGAACAAGCCGGCAGTAATACTGTG
TGATCGCGGCACATTGGACGGGGCAGCGTATGTGACTAAGGACATGTGGG
AGACCTTGTTGAAGAGAAAAGGGCTTGAACTTTTGTCGATTCGGGAGGGG
AGGTATGATGCGGTATTTCATTTGGTTACGGCTGCGACGGGTGCGGAGCT
TTATTATTCGCTTATGAACAATGAGACTCGAACGGAGTCGCCCGAATTTG
CGCGCGAAGTGGATTTGAAGACGCAAGGCGTGTGGAATGGGCATCCGAAG
CATTTTGTGATTGACAACTCTACGGACTTTGAAGGGAAGTTGGCGCGAGT
GCAGAACCAAGCTGCTCGGCTTGTAGGCTTGCCGCAATTGCCCCGTGGCG
CAGATCGTTGGTACCTGCGCCGGCCACATGACCCAGCATGCTTCACAGTG
CCGTACGAGAAGACGCAAGTCCGCAAGGTGTATTTGGTCAATGTAGGGAA
GGCTTTGCCGGATGGGAGGAATGTAAGCGTTGAGTACAACTATGTTGAAG
AGAGGTCGCAAGATGGTTCGGTAGCCTACGCACACACGAGCAAGCAGCGC
CTGGATGATGGATATGAGGCCGAGTTGAAGCGCATCATCGATGAGCGGGA
GTTTCACTTCCGTGCCACGACTATGGCGGACCCGTCGCGAAAGGAAGTGT
TTCAAACGCGTTACTCCTTCTTGTGGGCGCAGCAGGCTTTTGTGGTCATT
GATCACCATTCGGACAAACAGGAGTTTGGTCATGATCTATTTACGCTTCG
GCGGCAGGCTGAGGGAGGCACGCCGGAGTTCCCGCCTTTTTTGGATGTGG
GAGAGCACATTGAGGATGAAGACGGGCTATTCCCTTTTCCAACGCGCCCG
GCACCGTCACCCGTGAAGAAGGAGACAGTAGTCTAG
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protein sequence of NO04G01470.1

>NO04G01470.1-protein ID=NO04G01470.1-protein|Name=NO04G01470.1|organism=Nannochloropsis oceanica|type=polypeptide|length=462bp
MAGPPSPPIEQVAAVTSNVTHPGPSAMHSHLHLQDHRHQQQDPPAAATVN
INHGQHQSSEQEQELQHQGSDGHPRLIKIVLTGGPCGGKTTALARLSEFF
RTHGFRVFTVPEAATMLWSNGVALSDVLASEETQYWFQDTVLEFQMHLEN
GVEKIARSLNKPAVILCDRGTLDGAAYVTKDMWETLLKRKGLELLSIREG
RYDAVFHLVTAATGAELYYSLMNNETRTESPEFAREVDLKTQGVWNGHPK
HFVIDNSTDFEGKLARVQNQAARLVGLPQLPRGADRWYLRRPHDPACFTV
PYEKTQVRKVYLVNVGKALPDGRNVSVEYNYVEERSQDGSVAYAHTSKQR
LDDGYEAELKRIIDEREFHFRATTMADPSRKEVFQTRYSFLWAQQAFVVI
DHHSDKQEFGHDLFTLRRQAEGGTPEFPPFLDVGEHIEDEDGLFPFPTRP
APSPVKKETVV*
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mRNA from alignment at chr4:457186..458571+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO04G01470.1 ID=NO04G01470.1|Name=NO04G01470.1|organism=Nannochloropsis oceanica|type=mRNA|length=1386bp|location=Sequence derived from alignment at chr4:457186..458571+ (Nannochloropsis oceanica)
ATGGCAGGTCCTCCATCTCCACCAATAGAGCAAGTGGCAGCAGTGACGTC AAATGTCACCCATCCTGGGCCTTCTGCCATGCACAGCCACCTCCACCTTC AGGACCACCGCCATCAACAACAAGACCCGCCCGCTGCCGCAACGGTCAAT ATCAATCATGGCCAGCACCAGTCCTCAGAGCAGGAGCAAGAGCTACAGCA CCAAGGCAGCGACGGTCATCCTCGGCTAATCAAAATTGTTCTCACGGGCG GGCCCTGCGGAGGGAAAACTACGGCACTCGCGCGCTTGTCGGAATTCTTT CGCACCCACGGCTTTCGTGTCTTTACAGTCCCAGAGGCTGCTACTATGCT TTGGTCGAATGGCGTTGCCTTGTCAGATGTCCTGGCCTCGGAAGAAACTC AGTATTGGTTTCAAGACACCGTGTTGGAGTTCCAGATGCATTTGGAGAAT GGGGTAGAGAAGATTGCGCGGTCCTTGAACAAGCCGGCAGTAATACTGTG TGATCGCGGCACATTGGACGGGGCAGCGTATGTGACTAAGGACATGTGGG AGACCTTGTTGAAGAGAAAAGGGCTTGAACTTTTGTCGATTCGGGAGGGG AGGTATGATGCGGTATTTCATTTGGTTACGGCTGCGACGGGTGCGGAGCT TTATTATTCGCTTATGAACAATGAGACTCGAACGGAGTCGCCCGAATTTG CGCGCGAAGTGGATTTGAAGACGCAAGGCGTGTGGAATGGGCATCCGAAG CATTTTGTGATTGACAACTCTACGGACTTTGAAGGGAAGTTGGCGCGAGT GCAGAACCAAGCTGCTCGGCTTGTAGGCTTGCCGCAATTGCCCCGTGGCG CAGATCGTTGGTACCTGCGCCGGCCACATGACCCAGCATGCTTCACAGTG CCGTACGAGAAGACGCAAGTCCGCAAGGTGTATTTGGTCAATGTAGGGAA GGCTTTGCCGGATGGGAGGAATGTAAGCGTTGAGTACAACTATGTTGAAG AGAGGTCGCAAGATGGTTCGGTAGCCTACGCACACACGAGCAAGCAGCGC CTGGATGATGGATATGAGGCCGAGTTGAAGCGCATCATCGATGAGCGGGA GTTTCACTTCCGTGCCACGACTATGGCGGACCCGTCGCGAAAGGAAGTGT TTCAAACGCGTTACTCCTTCTTGTGGGCGCAGCAGGCTTTTGTGGTCATT GATCACCATTCGGACAAACAGGAGTTTGGTCATGATCTATTTACGCTTCG GCGGCAGGCTGAGGGAGGCACGCCGGAGTTCCCGCCTTTTTTGGATGTGG GAGAGCACATTGAGGATGAAGACGGGCTATTCCCTTTTCCAACGCGCCCG GCACCGTCACCCGTGAAGAAGGAGACAGTAGTCTAG
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Coding sequence (CDS) from alignment at chr4:457186..458571+

>NO04G01470.1 ID=NO04G01470.1|Name=NO04G01470.1|organism=Nannochloropsis oceanica|type=CDS|length=1386bp|location=Sequence derived from alignment at chr4:457186..458571+ (Nannochloropsis oceanica)
ATGGCAGGTCCTCCATCTCCACCAATAGAGCAAGTGGCAGCAGTGACGTC
AAATGTCACCCATCCTGGGCCTTCTGCCATGCACAGCCACCTCCACCTTC
AGGACCACCGCCATCAACAACAAGACCCGCCCGCTGCCGCAACGGTCAAT
ATCAATCATGGCCAGCACCAGTCCTCAGAGCAGGAGCAAGAGCTACAGCA
CCAAGGCAGCGACGGTCATCCTCGGCTAATCAAAATTGTTCTCACGGGCG
GGCCCTGCGGAGGGAAAACTACGGCACTCGCGCGCTTGTCGGAATTCTTT
CGCACCCACGGCTTTCGTGTCTTTACAGTCCCAGAGGCTGCTACTATGCT
TTGGTCGAATGGCGTTGCCTTGTCAGATGTCCTGGCCTCGGAAGAAACTC
AGTATTGGTTTCAAGACACCGTGTTGGAGTTCCAGATGCATTTGGAGAAT
GGGGTAGAGAAGATTGCGCGGTCCTTGAACAAGCCGGCAGTAATACTGTG
TGATCGCGGCACATTGGACGGGGCAGCGTATGTGACTAAGGACATGTGGG
AGACCTTGTTGAAGAGAAAAGGGCTTGAACTTTTGTCGATTCGGGAGGGG
AGGTATGATGCGGTATTTCATTTGGTTACGGCTGCGACGGGTGCGGAGCT
TTATTATTCGCTTATGAACAATGAGACTCGAACGGAGTCGCCCGAATTTG
CGCGCGAAGTGGATTTGAAGACGCAAGGCGTGTGGAATGGGCATCCGAAG
CATTTTGTGATTGACAACTCTACGGACTTTGAAGGGAAGTTGGCGCGAGT
GCAGAACCAAGCTGCTCGGCTTGTAGGCTTGCCGCAATTGCCCCGTGGCG
CAGATCGTTGGTACCTGCGCCGGCCACATGACCCAGCATGCTTCACAGTG
CCGTACGAGAAGACGCAAGTCCGCAAGGTGTATTTGGTCAATGTAGGGAA
GGCTTTGCCGGATGGGAGGAATGTAAGCGTTGAGTACAACTATGTTGAAG
AGAGGTCGCAAGATGGTTCGGTAGCCTACGCACACACGAGCAAGCAGCGC
CTGGATGATGGATATGAGGCCGAGTTGAAGCGCATCATCGATGAGCGGGA
GTTTCACTTCCGTGCCACGACTATGGCGGACCCGTCGCGAAAGGAAGTGT
TTCAAACGCGTTACTCCTTCTTGTGGGCGCAGCAGGCTTTTGTGGTCATT
GATCACCATTCGGACAAACAGGAGTTTGGTCATGATCTATTTACGCTTCG
GCGGCAGGCTGAGGGAGGCACGCCGGAGTTCCCGCCTTTTTTGGATGTGG
GAGAGCACATTGAGGATGAAGACGGGCTATTCCCTTTTCCAACGCGCCCG
GCACCGTCACCCGTGAAGAAGGAGACAGTAGTCTAG
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Synonyms
Publications