NO04G01450.1, NO04G01450.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO04G01450.1
Unique NameNO04G01450.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length4370
Alignment locationchr4:450843..455212 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:450843..455212 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO04G01450.1 vs.
Match: EWM28526.1 (dna repair and transcription protein [Nannochloropsis gaditana])

HSP 1 Score: 1228.8 bits (3178), Expect = 0.000e+0
Identity = 789/1455 (54.23%), Postives = 972/1455 (66.80%), Query Frame = 0
Query:    6 LSSLASGISGSGDGASNT------LSSSPFSTSSQALSQALAAYCAAVDPTAGTAGEGTKPPPPSSFLPTSSQDASIPHLNTVLLHVQRSKRFDELVGQMGPYLTSEEGRVRTRAAALLGEILNRLPKLPLTCAAVHHFVDFFSSRLSDFPSVAGSLLALRALLQHHGGAARKEADVIARAVFKDVHVPSMTQTIRQRAFEVLFEMTGALEEEEKEDEQPQQPQRKGGDESSSTIPTSLLGMQTDFIRGLIDSGEGEKDPRCLILFLKVIGRAQSSFPEAADALIEAVFDVTACYFPITFTPPPNDPYGITPDMLAQALREALTSRPSMAPLLLPLLVDKLTSTHVPAKLEALLTLQTAVRTLGVHTMRLNLPALTGALFQEVVSCPEAAVVSHALETCRVLAAHLSNPDDANVIGRGKRRERTGSSSKSRNKKIKEEADVAAESCIDSNKETQETREGADLSRPDERALAEADWQAFLLEIVQKAVSEVKANPDSLKGRASARLLTSIARASARAYSAVLKATIPITLQLVMAGKKSKPGRVLEEEEGEKHQAALLLLVDLVESVDPSLDFSATAEGPPISPYVPQLYATLLECLSSPASGPALLAVKGLASLATRSPSDLLSFSQMSSLVPLFTARLQAEERSVGPAYDPDLAQSLLQGLMALSSRRKMYTIAVLTHTLPELLTWMDEAAAA-GAAGERKGGTDTTTTTTTTTTKCSIAAVANGVRASDKSSGNSSSS--------------NGLELERCLGALATLAGQAEVFQAVVPSLLNRVLVS---PPTGGAPVGVEGEGWTKGGQVISSALKGGEGVTQILSSLASIFVSTSEANPAALPALLALPPSTLPASFISPSSAATGTAVDVGKEPSATAASSPSSSSSSSCLWSLLTALLSSAAQGRILDDAALEATLRIFGAVTEALPPTLQDLFAFRLLRFFF---PSSS-------SFLSSSSIFDVLDPSPPPAPGPSITGLQPLLPSTYPSQAQALSLLLTVLGSLYISSPIFASSGIQDALLPALIRLTLSEAQ-----EADSRSSPTGSYSTS---APLSSSSCFPDPACWGVALVVNKTAKEEVVAEAVATLLSGFKQRLATATSCSNSSSCSNSSSSSSDSILATARKDVASLIWLAKALALRCAPKKSMEEAVSSLIYVAGCPGGTGTGEREVESAEIEPSSARLALARQAAEGFGLILRDA----------VPSSSSSLPSSSSSSLIERLLAPRPGTSRVNPLWRQRLYYLAFPRLREAVDKHRARSQAKAAALLAVCTLVGSLPQAVIQAELEPIMLVVLQGMSSVSSKSGNNDSSNGSEEEEVEEKEIVVVLRARATETFVALVKNSPEAVVPHLATAIPLLYQLCTPSDPHFLPKAKLRVLALGSLMEIARLPYAKLHPYRATVSRGLLAPLDDRKRVVRQMAVKVRNEWMMMDR 1409
            ++SL    +  G G  +T       SS PFSTSS + ++AL++YC A D  A + GEG   PP       +S DA++ HLNT+LLHVQRSKRF++LV +MGPYLT+E   VRTR+A LLGE+L RLP LPLT AAVHH+V+FFSSRL DFPSVAGSLL +RALLQHH   A+KEA +IAR +FK ++VPSMTQTIRQR FEV+FEM GAL   E  + +           S + +P SLL MQ +F+ G+I+  EGEKDPRCLIL L +I R Q  FP A+DA IEA+FD+TACYFPITFTPPPNDPYGITPD+L+ ALREALT RPSMA  LLPLLVDKLTSTHVPAKLEALLTLQ A RT+G+  M  NL ++TGALFQE+VSC EA VV+ ALETCR LAAHLS  +DA   GRG    +  S + +  ++ KE           + +  +   +G D  R D  A  E  WQ  L+ IV KA SEVKANPDS+KGRASAR+L ++ARASARAY+AVLKA +P  LQL   GKK+KPGR++ E EGE+ +AALLLLVDLVE+VDP LDF+A+A GPP++PYVP L+   L CL+SPASGPALLAVKGLASLATRSPS LL+ +Q S LV LFT R+QAEERSVGPAYD +L Q+LL+ L  LS+RR+     V+ HT+PELL W+DEAAA  G +G    G +         +K  +   +   R    S+G    S              N LEL+RCLGALA LA Q E+F+AV+PSLL RVLV+     T       +  GWT      S  L+  E    ILSSLA+I V TS  N AALP LL LP         S   A  G    +  + S      P ++     LW LLT +L SAA G+ILDDAAL+A +R+  AVTEAL    QDL   RLLRFFF   PSSS       +  S+ S F ++DP PP A   SI G QPL PS++ SQ QA+++LLTVL SL++ S IF S G++  LLPAL+ LTL +A+     E  + S+   S + S    PL+S    P PA WGVAL+ NK AK   V   VA LLS  +QRLA     S+SS+ S          LATA +DV+S++WLAKALALRC PK ++E+A+S LI VAGC    G    E      E + ARL LAR+A+EGFGLILRD+          +PS SS    S    L  +LL  R  T+RVNPLWRQRLY ++F RLREAV++HRA  QA++AALLA+C ++GSLP  +IQ ++EPI+ VVLQGMS V+++        G+++++  E+E   VLRARATETFVAL K S +AV+PHL+T IPLL +LCT +DPHFLP A+LRVLALGSL+EI RLPYAKLHPYR +VSRGLLAPLDDRKRVVRQMAVKVRNEW++MDR
Sbjct:    1 MASLTFNSTVDGGGYESTKESIKEASSPPFSTSS-SFAEALSSYCNAGDAAAASNGEGEAVPPN-----VTSPDATVAHLNTILLHVQRSKRFEDLVAEMGPYLTNEAASVRTRSATLLGEVLYRLPSLPLTDAAVHHYVEFFSSRLEDFPSVAGSLLGIRALLQHHKEPAQKEAGIIARGLFKHLYVPSMTQTIRQRTFEVVFEMIGALNGAEDTEGE------CNATTSGAAVPASLLDMQDEFVTGVIECIEGEKDPRCLILCLNIISRVQVIFPAASDAHIEALFDITACYFPITFTPPPNDPYGITPDVLSHALREALTRRPSMAEFLLPLLVDKLTSTHVPAKLEALLTLQVATRTIGMRAMLGNLASVTGALFQEIVSCAEAPVVAAALETCRSLAAHLSCLEDA---GRGTTGGKPRSKAYANPRESKEGEGSGRSEKAGAGEGGRAQNKGGD--RAD--AEMEKAWQTVLVNIVGKAASEVKANPDSMKGRASARVLGAVARASARAYAAVLKAIVPGALQLATEGKKAKPGRMVVEGEGERQEAALLLLVDLVEAVDPDLDFTASAHGPPLAPYVPLLHGRFLACLNSPASGPALLAVKGLASLATRSPSQLLTSAQASELVVLFTHRIQAEERSVGPAYDRNLDQALLEALKVLSARRQELRATVVEHTVPELLRWLDEAAAGRGVSGSTAHGKENGNGRADLDSK-DVGQSSRPSRKEGVSAGRIDDSTVVNKGKCNVECGINSLELDRCLGALAFLADQTEIFEAVLPSLLARVLVAQNMSDTAEDKHRNDMGGWT------SWTLRTEEEARHILSSLAAILVRTSAINQAALPGLLGLP------ELASSKKAEPGQVEAMDVQESLL----PVATERGPWLWWLLTGVLGSAAAGKILDDAALDAIVRMMSAVTEALSRRSQDLLTERLLRFFFPFPPSSSPAAPFVRTSTSTPSRFGIVDPDPPDAATFSIPGFQPLDPSSHRSQGQAVTILLTVLNSLHVDSTIFDSLGLEQDLLPALVNLTLLDAEGLGVVEHRTESTSIASVNDSRAHPPLASEG--PAPASWGVALIANKAAKPRFVEVFVAPLLSQLRQRLAAEERKSHSSTES----------LATATRDVSSVVWLAKALALRCVPKGALEDAISLLIDVAGCTMLEGKQVPEKNKIAEEATPARLVLARRASEGFGLILRDSSLTEGTARECLPSFSSLTTFSCPIPLANQLLTARLNTARVNPLWRQRLYNVSFTRLREAVERHRANPQAQSAALLALCNMLGSLPPPIIQQDMEPIIRVVLQGMSCVATRG----KGEGADDDKDTEEEAAAVLRARATETFVALAKESLDAVMPHLSTVIPLLCKLCTLADPHFLPTARLRVLALGSLLEITRLPYAKLHPYRTSVSRGLLAPLDDRKRVVRQMAVKVRNEWLVMDR 1403          
The following BLAST results are available for this feature:
BLAST of NO04G01450.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28526.10.000e+054.23dna repair and transcription protein [Nannochlorop... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO04G01450NO04G01450Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO04G01450.1NO04G01450.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO04G01450.1.cds1NO04G01450.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO04G01450.1 ID=NO04G01450.1|Name=NO04G01450.1|organism=Nannochloropsis oceanica|type=mRNA|length=4370bp
AATAGAAGAACCTACGTCATGACTACATTGGCACTGAGTAGCTTGGCATC
GGGAATTTCAGGGAGTGGGGATGGAGCTAGCAATACCCTATCCTCGTCTC
CCTTCTCGACCTCCTCTCAAGCGCTGTCGCAAGCCCTCGCTGCATACTGC
GCGGCCGTCGACCCTACTGCAGGGACCGCTGGGGAAGGGACGAAGCCCCC
ACCACCTTCCTCCTTTTTACCCACGTCTTCTCAAGACGCCTCCATTCCGC
ACCTTAACACGGTACTCCTGCATGTACAACGTAGCAAGCGCTTCGACGAA
TTGGTGGGGCAAATGGGGCCTTACCTCACGAGCGAGGAAGGACGAGTTCG
AACCCGCGCCGCTGCGTTGTTGGGTGAAATCTTGAACCGCCTTCCAAAGC
TACCTCTCACCTGCGCGGCTGTCCACCACTTTGTGGATTTCTTTTCGAGT
CGCCTCTCCGATTTCCCCTCTGTAGCCGGCTCGCTCTTAGCCTTGCGTGC
CCTGCTCCAACACCACGGAGGGGCGGCCAGAAAGGAGGCCGATGTCATTG
CCCGTGCTGTATTCAAGGACGTGCATGTCCCCTCCATGACGCAAACGATT
CGACAACGAGCCTTTGAGGTCCTGTTTGAGATGACGGGTGCGTTGGAGGA
AGAGGAGAAGGAGGACGAGCAGCCGCAGCAGCCGCAGCGGAAAGGCGGGG
ACGAGAGCAGTAGCACTATTCCCACTAGCTTGCTAGGGATGCAAACAGAC
TTCATTCGCGGGCTGATTGATAGCGGGGAAGGCGAGAAGGATCCACGTTG
CCTGATCCTCTTCCTCAAAGTCATCGGCCGTGCCCAGTCGTCCTTTCCCG
AGGCCGCCGACGCCCTCATCGAAGCCGTCTTCGATGTGACCGCCTGCTAC
TTCCCTATCACCTTCACCCCTCCTCCCAACGACCCCTACGGCATCACGCC
CGACATGCTGGCACAAGCCTTGCGAGAAGCCTTGACATCCCGCCCGTCCA
TGGCCCCGCTCCTCCTTCCCCTCCTGGTCGACAAACTCACATCTACCCAC
GTCCCGGCCAAATTGGAAGCGCTCCTCACCCTTCAGACGGCCGTACGGAC
ACTTGGGGTGCATACCATGCGCTTGAATCTCCCTGCGCTTACTGGGGCGT
TATTTCAAGAGGTAGTATCATGTCCCGAGGCAGCAGTAGTGTCCCACGCG
CTGGAAACGTGTCGAGTACTGGCTGCGCATCTGTCAAATCCGGATGATGC
AAACGTCATAGGAAGAGGAAAAAGGCGGGAGAGGACAGGCAGCAGCAGCA
AAAGCAGAAACAAGAAAATCAAAGAAGAAGCAGATGTAGCAGCAGAAAGC
TGCATTGACAGCAACAAAGAAACACAGGAGACAAGGGAAGGTGCGGACCT
CAGTCGACCAGACGAGCGCGCCCTCGCCGAAGCCGATTGGCAAGCTTTTC
TACTCGAGATCGTCCAGAAAGCCGTATCGGAGGTCAAAGCCAACCCAGAC
TCCCTCAAAGGTCGTGCCAGTGCTCGCCTTCTTACCTCTATAGCTCGCGC
CTCCGCCCGTGCTTACTCCGCTGTATTGAAAGCCACCATCCCTATCACCC
TCCAGCTCGTCATGGCTGGCAAGAAATCCAAACCCGGACGAGTCCTTGAA
GAAGAGGAAGGCGAGAAGCATCAAGCCGCTCTCCTCCTTCTCGTCGATTT
GGTGGAGTCCGTGGACCCTTCCCTTGACTTCAGCGCAACAGCCGAAGGCC
CTCCTATCTCCCCCTATGTGCCGCAACTCTATGCAACCCTCCTTGAATGC
CTCAGTTCCCCTGCTTCAGGCCCTGCCTTACTAGCGGTCAAAGGGCTCGC
GTCTCTTGCCACGCGCTCTCCTTCGGACCTCCTTTCTTTTTCGCAAATGT
CCTCCCTCGTCCCTTTGTTCACGGCACGATTGCAAGCTGAGGAACGCTCC
GTGGGCCCTGCTTATGACCCCGACCTGGCCCAGTCATTACTACAGGGGTT
GATGGCACTCAGCTCGCGACGAAAGATGTACACGATAGCTGTCTTGACCC
ATACGTTGCCGGAGTTGTTGACGTGGATGGATGAGGCGGCTGCTGCCGGT
GCTGCAGGGGAGAGAAAAGGAGGAACGGATACGACGACGACGACGACGAC
GACGACGACGAAATGTAGCATCGCTGCAGTTGCAAACGGTGTAAGAGCCA
GTGACAAAAGCAGTGGTAACAGCAGCAGCAGCAATGGGCTAGAACTGGAA
CGATGTTTGGGTGCGTTGGCGACTTTGGCAGGTCAGGCCGAAGTCTTCCA
AGCCGTCGTTCCCTCCTTGCTCAATCGTGTCTTGGTCTCTCCTCCTACAG
GAGGAGCACCGGTGGGGGTGGAAGGCGAGGGATGGACGAAGGGAGGGCAA
GTTATCTCGAGTGCGTTGAAGGGGGGGGAAGGGGTGACGCAGATTTTGTC
CTCTTTGGCTTCCATTTTTGTATCGACCAGTGAGGCGAACCCTGCAGCCT
TGCCTGCTCTTTTAGCGTTACCACCATCGACCCTGCCTGCTTCATTTATT
TCGCCTTCCTCCGCAGCAACAGGTACAGCCGTGGATGTGGGGAAGGAACC
ATCTGCCACTGCGGCTTCCTCTCCTTCCTCCTCTTCCTCCTCCTCTTGCC
TCTGGTCCTTACTAACAGCCCTTCTCTCCTCCGCAGCCCAAGGACGCATT
CTGGACGACGCTGCTCTAGAAGCAACTCTCCGCATATTTGGCGCAGTCAC
CGAAGCTCTTCCCCCCACCCTTCAAGACCTTTTCGCGTTTCGCCTTCTCC
GTTTTTTTTTCCCCTCCTCATCCTCCTTCTTGTCCTCGTCCTCAATCTTT
GACGTCCTCGACCCCTCCCCTCCCCCGGCTCCAGGCCCCAGCATCACTGG
CCTCCAACCCCTCCTTCCCTCTACCTACCCCTCACAAGCACAAGCCCTCT
CTCTTCTTCTGACCGTTCTCGGTTCTCTTTACATTTCATCCCCCATCTTC
GCATCTTCAGGGATTCAAGACGCCCTTCTTCCTGCCCTCATCCGCCTAAC
CTTGTCAGAAGCACAAGAAGCAGACAGCAGGAGCAGCCCCACTGGCAGCT
ATTCTACCAGCGCTCCACTTTCTTCTTCTTCGTGCTTTCCCGACCCGGCC
TGTTGGGGAGTAGCTCTCGTCGTGAATAAAACAGCGAAGGAAGAAGTAGT
CGCAGAGGCAGTCGCCACCCTCCTCTCAGGCTTTAAGCAACGGCTCGCCA
CTGCGACCAGTTGCAGCAACAGTAGCAGCTGCAGCAACAGCAGCAGCAGC
AGCAGTGATAGTATTTTGGCAACAGCGAGAAAGGACGTTGCATCCTTGAT
CTGGTTGGCCAAAGCGCTGGCCCTTCGGTGCGCCCCAAAGAAGTCAATGG
AAGAGGCGGTCTCGTCGCTCATCTACGTGGCAGGGTGTCCCGGAGGAACA
GGAACAGGAGAAAGAGAAGTTGAATCAGCGGAAATAGAGCCATCTTCTGC
CCGTCTAGCCTTAGCTCGACAAGCTGCAGAAGGATTTGGTCTCATCCTCC
GGGATGCAGTGCCCTCGTCATCCTCCTCCCTCCCTTCTTCCTCCTCATCC
TCACTCATCGAGCGCCTGCTCGCCCCGCGTCCGGGCACCTCTCGAGTCAA
CCCCCTCTGGCGGCAACGGCTCTACTACCTGGCTTTTCCACGTCTACGGG
AAGCTGTGGATAAACACCGTGCCCGATCACAGGCAAAAGCAGCGGCTTTG
CTGGCGGTGTGTACCCTGGTGGGTTCGTTGCCCCAAGCCGTTATCCAGGC
CGAGCTCGAGCCTATCATGCTCGTGGTCCTGCAGGGAATGTCGTCTGTGT
CGAGCAAAAGCGGCAACAACGACAGCAGCAATGGTTCAGAGGAGGAGGAG
GTGGAAGAGAAGGAAATCGTAGTTGTTCTCAGGGCGCGGGCGACTGAGAC
ATTTGTTGCGCTGGTCAAGAACTCTCCCGAGGCAGTAGTGCCGCATCTTG
CCACTGCAATTCCTTTGCTTTATCAACTTTGCACCCCTTCTGACCCCCAC
TTTTTGCCCAAGGCGAAGCTGCGTGTGTTGGCGCTGGGGAGTTTGATGGA
GATAGCTCGGTTGCCTTATGCCAAATTGCATCCCTACAGGGCGACGGTTA
GTAGGGGGCTGCTTGCCCCATTGGATGATCGGAAGCGGGTGGTGAGGCAG
ATGGCGGTGAAGGTAAGGAATGAATGGATGATGATGGATAGATAGGTGAA
CGTGAAGAATCAGGAGAAGGCTTAGCGGGTAGGTCAAATGGTCCAAATTT
GATAAGGAGGCTAGCTCTTGAAGATAGACAGAAAATAGTTTTGATAAATC
ACCAAAAACAACAAGTAACA
back to top

protein sequence of NO04G01450.1

>NO04G01450.1-protein ID=NO04G01450.1-protein|Name=NO04G01450.1|organism=Nannochloropsis oceanica|type=polypeptide|length=1409bp
MTTLALSSLASGISGSGDGASNTLSSSPFSTSSQALSQALAAYCAAVDPT
AGTAGEGTKPPPPSSFLPTSSQDASIPHLNTVLLHVQRSKRFDELVGQMG
PYLTSEEGRVRTRAAALLGEILNRLPKLPLTCAAVHHFVDFFSSRLSDFP
SVAGSLLALRALLQHHGGAARKEADVIARAVFKDVHVPSMTQTIRQRAFE
VLFEMTGALEEEEKEDEQPQQPQRKGGDESSSTIPTSLLGMQTDFIRGLI
DSGEGEKDPRCLILFLKVIGRAQSSFPEAADALIEAVFDVTACYFPITFT
PPPNDPYGITPDMLAQALREALTSRPSMAPLLLPLLVDKLTSTHVPAKLE
ALLTLQTAVRTLGVHTMRLNLPALTGALFQEVVSCPEAAVVSHALETCRV
LAAHLSNPDDANVIGRGKRRERTGSSSKSRNKKIKEEADVAAESCIDSNK
ETQETREGADLSRPDERALAEADWQAFLLEIVQKAVSEVKANPDSLKGRA
SARLLTSIARASARAYSAVLKATIPITLQLVMAGKKSKPGRVLEEEEGEK
HQAALLLLVDLVESVDPSLDFSATAEGPPISPYVPQLYATLLECLSSPAS
GPALLAVKGLASLATRSPSDLLSFSQMSSLVPLFTARLQAEERSVGPAYD
PDLAQSLLQGLMALSSRRKMYTIAVLTHTLPELLTWMDEAAAAGAAGERK
GGTDTTTTTTTTTTKCSIAAVANGVRASDKSSGNSSSSNGLELERCLGAL
ATLAGQAEVFQAVVPSLLNRVLVSPPTGGAPVGVEGEGWTKGGQVISSAL
KGGEGVTQILSSLASIFVSTSEANPAALPALLALPPSTLPASFISPSSAA
TGTAVDVGKEPSATAASSPSSSSSSSCLWSLLTALLSSAAQGRILDDAAL
EATLRIFGAVTEALPPTLQDLFAFRLLRFFFPSSSSFLSSSSIFDVLDPS
PPPAPGPSITGLQPLLPSTYPSQAQALSLLLTVLGSLYISSPIFASSGIQ
DALLPALIRLTLSEAQEADSRSSPTGSYSTSAPLSSSSCFPDPACWGVAL
VVNKTAKEEVVAEAVATLLSGFKQRLATATSCSNSSSCSNSSSSSSDSIL
ATARKDVASLIWLAKALALRCAPKKSMEEAVSSLIYVAGCPGGTGTGERE
VESAEIEPSSARLALARQAAEGFGLILRDAVPSSSSSLPSSSSSSLIERL
LAPRPGTSRVNPLWRQRLYYLAFPRLREAVDKHRARSQAKAAALLAVCTL
VGSLPQAVIQAELEPIMLVVLQGMSSVSSKSGNNDSSNGSEEEEVEEKEI
VVVLRARATETFVALVKNSPEAVVPHLATAIPLLYQLCTPSDPHFLPKAK
LRVLALGSLMEIARLPYAKLHPYRATVSRGLLAPLDDRKRVVRQMAVKVR
NEWMMMDR*
back to top

mRNA from alignment at chr4:450843..455212+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO04G01450.1 ID=NO04G01450.1|Name=NO04G01450.1|organism=Nannochloropsis oceanica|type=mRNA|length=4370bp|location=Sequence derived from alignment at chr4:450843..455212+ (Nannochloropsis oceanica)
AATAGAAGAACCTACGTCATGACTACATTGGCACTGAGTAGCTTGGCATC GGGAATTTCAGGGAGTGGGGATGGAGCTAGCAATACCCTATCCTCGTCTC CCTTCTCGACCTCCTCTCAAGCGCTGTCGCAAGCCCTCGCTGCATACTGC GCGGCCGTCGACCCTACTGCAGGGACCGCTGGGGAAGGGACGAAGCCCCC ACCACCTTCCTCCTTTTTACCCACGTCTTCTCAAGACGCCTCCATTCCGC ACCTTAACACGGTACTCCTGCATGTACAACGTAGCAAGCGCTTCGACGAA TTGGTGGGGCAAATGGGGCCTTACCTCACGAGCGAGGAAGGACGAGTTCG AACCCGCGCCGCTGCGTTGTTGGGTGAAATCTTGAACCGCCTTCCAAAGC TACCTCTCACCTGCGCGGCTGTCCACCACTTTGTGGATTTCTTTTCGAGT CGCCTCTCCGATTTCCCCTCTGTAGCCGGCTCGCTCTTAGCCTTGCGTGC CCTGCTCCAACACCACGGAGGGGCGGCCAGAAAGGAGGCCGATGTCATTG CCCGTGCTGTATTCAAGGACGTGCATGTCCCCTCCATGACGCAAACGATT CGACAACGAGCCTTTGAGGTCCTGTTTGAGATGACGGGTGCGTTGGAGGA AGAGGAGAAGGAGGACGAGCAGCCGCAGCAGCCGCAGCGGAAAGGCGGGG ACGAGAGCAGTAGCACTATTCCCACTAGCTTGCTAGGGATGCAAACAGAC TTCATTCGCGGGCTGATTGATAGCGGGGAAGGCGAGAAGGATCCACGTTG CCTGATCCTCTTCCTCAAAGTCATCGGCCGTGCCCAGTCGTCCTTTCCCG AGGCCGCCGACGCCCTCATCGAAGCCGTCTTCGATGTGACCGCCTGCTAC TTCCCTATCACCTTCACCCCTCCTCCCAACGACCCCTACGGCATCACGCC CGACATGCTGGCACAAGCCTTGCGAGAAGCCTTGACATCCCGCCCGTCCA TGGCCCCGCTCCTCCTTCCCCTCCTGGTCGACAAACTCACATCTACCCAC GTCCCGGCCAAATTGGAAGCGCTCCTCACCCTTCAGACGGCCGTACGGAC ACTTGGGGTGCATACCATGCGCTTGAATCTCCCTGCGCTTACTGGGGCGT TATTTCAAGAGGTAGTATCATGTCCCGAGGCAGCAGTAGTGTCCCACGCG CTGGAAACGTGTCGAGTACTGGCTGCGCATCTGTCAAATCCGGATGATGC AAACGTCATAGGAAGAGGAAAAAGGCGGGAGAGGACAGGCAGCAGCAGCA AAAGCAGAAACAAGAAAATCAAAGAAGAAGCAGATGTAGCAGCAGAAAGC TGCATTGACAGCAACAAAGAAACACAGGAGACAAGGGAAGGTGCGGACCT CAGTCGACCAGACGAGCGCGCCCTCGCCGAAGCCGATTGGCAAGCTTTTC TACTCGAGATCGTCCAGAAAGCCGTATCGGAGGTCAAAGCCAACCCAGAC TCCCTCAAAGGTCGTGCCAGTGCTCGCCTTCTTACCTCTATAGCTCGCGC CTCCGCCCGTGCTTACTCCGCTGTATTGAAAGCCACCATCCCTATCACCC TCCAGCTCGTCATGGCTGGCAAGAAATCCAAACCCGGACGAGTCCTTGAA GAAGAGGAAGGCGAGAAGCATCAAGCCGCTCTCCTCCTTCTCGTCGATTT GGTGGAGTCCGTGGACCCTTCCCTTGACTTCAGCGCAACAGCCGAAGGCC CTCCTATCTCCCCCTATGTGCCGCAACTCTATGCAACCCTCCTTGAATGC CTCAGTTCCCCTGCTTCAGGCCCTGCCTTACTAGCGGTCAAAGGGCTCGC GTCTCTTGCCACGCGCTCTCCTTCGGACCTCCTTTCTTTTTCGCAAATGT CCTCCCTCGTCCCTTTGTTCACGGCACGATTGCAAGCTGAGGAACGCTCC GTGGGCCCTGCTTATGACCCCGACCTGGCCCAGTCATTACTACAGGGGTT GATGGCACTCAGCTCGCGACGAAAGATGTACACGATAGCTGTCTTGACCC ATACGTTGCCGGAGTTGTTGACGTGGATGGATGAGGCGGCTGCTGCCGGT GCTGCAGGGGAGAGAAAAGGAGGAACGGATACGACGACGACGACGACGAC GACGACGACGAAATGTAGCATCGCTGCAGTTGCAAACGGTGTAAGAGCCA GTGACAAAAGCAGTGGTAACAGCAGCAGCAGCAATGGGCTAGAACTGGAA CGATGTTTGGGTGCGTTGGCGACTTTGGCAGGTCAGGCCGAAGTCTTCCA AGCCGTCGTTCCCTCCTTGCTCAATCGTGTCTTGGTCTCTCCTCCTACAG GAGGAGCACCGGTGGGGGTGGAAGGCGAGGGATGGACGAAGGGAGGGCAA GTTATCTCGAGTGCGTTGAAGGGGGGGGAAGGGGTGACGCAGATTTTGTC CTCTTTGGCTTCCATTTTTGTATCGACCAGTGAGGCGAACCCTGCAGCCT TGCCTGCTCTTTTAGCGTTACCACCATCGACCCTGCCTGCTTCATTTATT TCGCCTTCCTCCGCAGCAACAGGTACAGCCGTGGATGTGGGGAAGGAACC ATCTGCCACTGCGGCTTCCTCTCCTTCCTCCTCTTCCTCCTCCTCTTGCC TCTGGTCCTTACTAACAGCCCTTCTCTCCTCCGCAGCCCAAGGACGCATT CTGGACGACGCTGCTCTAGAAGCAACTCTCCGCATATTTGGCGCAGTCAC CGAAGCTCTTCCCCCCACCCTTCAAGACCTTTTCGCGTTTCGCCTTCTCC GTTTTTTTTTCCCCTCCTCATCCTCCTTCTTGTCCTCGTCCTCAATCTTT GACGTCCTCGACCCCTCCCCTCCCCCGGCTCCAGGCCCCAGCATCACTGG CCTCCAACCCCTCCTTCCCTCTACCTACCCCTCACAAGCACAAGCCCTCT CTCTTCTTCTGACCGTTCTCGGTTCTCTTTACATTTCATCCCCCATCTTC GCATCTTCAGGGATTCAAGACGCCCTTCTTCCTGCCCTCATCCGCCTAAC CTTGTCAGAAGCACAAGAAGCAGACAGCAGGAGCAGCCCCACTGGCAGCT ATTCTACCAGCGCTCCACTTTCTTCTTCTTCGTGCTTTCCCGACCCGGCC TGTTGGGGAGTAGCTCTCGTCGTGAATAAAACAGCGAAGGAAGAAGTAGT CGCAGAGGCAGTCGCCACCCTCCTCTCAGGCTTTAAGCAACGGCTCGCCA CTGCGACCAGTTGCAGCAACAGTAGCAGCTGCAGCAACAGCAGCAGCAGC AGCAGTGATAGTATTTTGGCAACAGCGAGAAAGGACGTTGCATCCTTGAT CTGGTTGGCCAAAGCGCTGGCCCTTCGGTGCGCCCCAAAGAAGTCAATGG AAGAGGCGGTCTCGTCGCTCATCTACGTGGCAGGGTGTCCCGGAGGAACA GGAACAGGAGAAAGAGAAGTTGAATCAGCGGAAATAGAGCCATCTTCTGC CCGTCTAGCCTTAGCTCGACAAGCTGCAGAAGGATTTGGTCTCATCCTCC GGGATGCAGTGCCCTCGTCATCCTCCTCCCTCCCTTCTTCCTCCTCATCC TCACTCATCGAGCGCCTGCTCGCCCCGCGTCCGGGCACCTCTCGAGTCAA CCCCCTCTGGCGGCAACGGCTCTACTACCTGGCTTTTCCACGTCTACGGG AAGCTGTGGATAAACACCGTGCCCGATCACAGGCAAAAGCAGCGGCTTTG CTGGCGGTGTGTACCCTGGTGGGTTCGTTGCCCCAAGCCGTTATCCAGGC CGAGCTCGAGCCTATCATGCTCGTGGTCCTGCAGGGAATGTCGTCTGTGT CGAGCAAAAGCGGCAACAACGACAGCAGCAATGGTTCAGAGGAGGAGGAG GTGGAAGAGAAGGAAATCGTAGTTGTTCTCAGGGCGCGGGCGACTGAGAC ATTTGTTGCGCTGGTCAAGAACTCTCCCGAGGCAGTAGTGCCGCATCTTG CCACTGCAATTCCTTTGCTTTATCAACTTTGCACCCCTTCTGACCCCCAC TTTTTGCCCAAGGCGAAGCTGCGTGTGTTGGCGCTGGGGAGTTTGATGGA GATAGCTCGGTTGCCTTATGCCAAATTGCATCCCTACAGGGCGACGGTTA GTAGGGGGCTGCTTGCCCCATTGGATGATCGGAAGCGGGTGGTGAGGCAG ATGGCGGTGAAGGTAAGGAATGAATGGATGATGATGGATAGATAGGTGAA CGTGAAGAATCAGGAGAAGGCTTAGCGGGTAGGTCAAATGGTCCAAATTT GATAAGGAGGCTAGCTCTTGAAGATAGACAGAAAATAGTTTTGATAAATC ACCAAAAACAACAAGTAACA
back to top

Coding sequence (CDS) from alignment at chr4:450843..455212+

>NO04G01450.1 ID=NO04G01450.1|Name=NO04G01450.1|organism=Nannochloropsis oceanica|type=CDS|length=4227bp|location=Sequence derived from alignment at chr4:450843..455212+ (Nannochloropsis oceanica)
ATGACTACATTGGCACTGAGTAGCTTGGCATCGGGAATTTCAGGGAGTGG
GGATGGAGCTAGCAATACCCTATCCTCGTCTCCCTTCTCGACCTCCTCTC
AAGCGCTGTCGCAAGCCCTCGCTGCATACTGCGCGGCCGTCGACCCTACT
GCAGGGACCGCTGGGGAAGGGACGAAGCCCCCACCACCTTCCTCCTTTTT
ACCCACGTCTTCTCAAGACGCCTCCATTCCGCACCTTAACACGGTACTCC
TGCATGTACAACGTAGCAAGCGCTTCGACGAATTGGTGGGGCAAATGGGG
CCTTACCTCACGAGCGAGGAAGGACGAGTTCGAACCCGCGCCGCTGCGTT
GTTGGGTGAAATCTTGAACCGCCTTCCAAAGCTACCTCTCACCTGCGCGG
CTGTCCACCACTTTGTGGATTTCTTTTCGAGTCGCCTCTCCGATTTCCCC
TCTGTAGCCGGCTCGCTCTTAGCCTTGCGTGCCCTGCTCCAACACCACGG
AGGGGCGGCCAGAAAGGAGGCCGATGTCATTGCCCGTGCTGTATTCAAGG
ACGTGCATGTCCCCTCCATGACGCAAACGATTCGACAACGAGCCTTTGAG
GTCCTGTTTGAGATGACGGGTGCGTTGGAGGAAGAGGAGAAGGAGGACGA
GCAGCCGCAGCAGCCGCAGCGGAAAGGCGGGGACGAGAGCAGTAGCACTA
TTCCCACTAGCTTGCTAGGGATGCAAACAGACTTCATTCGCGGGCTGATT
GATAGCGGGGAAGGCGAGAAGGATCCACGTTGCCTGATCCTCTTCCTCAA
AGTCATCGGCCGTGCCCAGTCGTCCTTTCCCGAGGCCGCCGACGCCCTCA
TCGAAGCCGTCTTCGATGTGACCGCCTGCTACTTCCCTATCACCTTCACC
CCTCCTCCCAACGACCCCTACGGCATCACGCCCGACATGCTGGCACAAGC
CTTGCGAGAAGCCTTGACATCCCGCCCGTCCATGGCCCCGCTCCTCCTTC
CCCTCCTGGTCGACAAACTCACATCTACCCACGTCCCGGCCAAATTGGAA
GCGCTCCTCACCCTTCAGACGGCCGTACGGACACTTGGGGTGCATACCAT
GCGCTTGAATCTCCCTGCGCTTACTGGGGCGTTATTTCAAGAGGTAGTAT
CATGTCCCGAGGCAGCAGTAGTGTCCCACGCGCTGGAAACGTGTCGAGTA
CTGGCTGCGCATCTGTCAAATCCGGATGATGCAAACGTCATAGGAAGAGG
AAAAAGGCGGGAGAGGACAGGCAGCAGCAGCAAAAGCAGAAACAAGAAAA
TCAAAGAAGAAGCAGATGTAGCAGCAGAAAGCTGCATTGACAGCAACAAA
GAAACACAGGAGACAAGGGAAGGTGCGGACCTCAGTCGACCAGACGAGCG
CGCCCTCGCCGAAGCCGATTGGCAAGCTTTTCTACTCGAGATCGTCCAGA
AAGCCGTATCGGAGGTCAAAGCCAACCCAGACTCCCTCAAAGGTCGTGCC
AGTGCTCGCCTTCTTACCTCTATAGCTCGCGCCTCCGCCCGTGCTTACTC
CGCTGTATTGAAAGCCACCATCCCTATCACCCTCCAGCTCGTCATGGCTG
GCAAGAAATCCAAACCCGGACGAGTCCTTGAAGAAGAGGAAGGCGAGAAG
CATCAAGCCGCTCTCCTCCTTCTCGTCGATTTGGTGGAGTCCGTGGACCC
TTCCCTTGACTTCAGCGCAACAGCCGAAGGCCCTCCTATCTCCCCCTATG
TGCCGCAACTCTATGCAACCCTCCTTGAATGCCTCAGTTCCCCTGCTTCA
GGCCCTGCCTTACTAGCGGTCAAAGGGCTCGCGTCTCTTGCCACGCGCTC
TCCTTCGGACCTCCTTTCTTTTTCGCAAATGTCCTCCCTCGTCCCTTTGT
TCACGGCACGATTGCAAGCTGAGGAACGCTCCGTGGGCCCTGCTTATGAC
CCCGACCTGGCCCAGTCATTACTACAGGGGTTGATGGCACTCAGCTCGCG
ACGAAAGATGTACACGATAGCTGTCTTGACCCATACGTTGCCGGAGTTGT
TGACGTGGATGGATGAGGCGGCTGCTGCCGGTGCTGCAGGGGAGAGAAAA
GGAGGAACGGATACGACGACGACGACGACGACGACGACGACGAAATGTAG
CATCGCTGCAGTTGCAAACGGTGTAAGAGCCAGTGACAAAAGCAGTGGTA
ACAGCAGCAGCAGCAATGGGCTAGAACTGGAACGATGTTTGGGTGCGTTG
GCGACTTTGGCAGGTCAGGCCGAAGTCTTCCAAGCCGTCGTTCCCTCCTT
GCTCAATCGTGTCTTGGTCTCTCCTCCTACAGGAGGAGCACCGGTGGGGG
TGGAAGGCGAGGGATGGACGAAGGGAGGGCAAGTTATCTCGAGTGCGTTG
AAGGGGGGGGAAGGGGTGACGCAGATTTTGTCCTCTTTGGCTTCCATTTT
TGTATCGACCAGTGAGGCGAACCCTGCAGCCTTGCCTGCTCTTTTAGCGT
TACCACCATCGACCCTGCCTGCTTCATTTATTTCGCCTTCCTCCGCAGCA
ACAGGTACAGCCGTGGATGTGGGGAAGGAACCATCTGCCACTGCGGCTTC
CTCTCCTTCCTCCTCTTCCTCCTCCTCTTGCCTCTGGTCCTTACTAACAG
CCCTTCTCTCCTCCGCAGCCCAAGGACGCATTCTGGACGACGCTGCTCTA
GAAGCAACTCTCCGCATATTTGGCGCAGTCACCGAAGCTCTTCCCCCCAC
CCTTCAAGACCTTTTCGCGTTTCGCCTTCTCCGTTTTTTTTTCCCCTCCT
CATCCTCCTTCTTGTCCTCGTCCTCAATCTTTGACGTCCTCGACCCCTCC
CCTCCCCCGGCTCCAGGCCCCAGCATCACTGGCCTCCAACCCCTCCTTCC
CTCTACCTACCCCTCACAAGCACAAGCCCTCTCTCTTCTTCTGACCGTTC
TCGGTTCTCTTTACATTTCATCCCCCATCTTCGCATCTTCAGGGATTCAA
GACGCCCTTCTTCCTGCCCTCATCCGCCTAACCTTGTCAGAAGCACAAGA
AGCAGACAGCAGGAGCAGCCCCACTGGCAGCTATTCTACCAGCGCTCCAC
TTTCTTCTTCTTCGTGCTTTCCCGACCCGGCCTGTTGGGGAGTAGCTCTC
GTCGTGAATAAAACAGCGAAGGAAGAAGTAGTCGCAGAGGCAGTCGCCAC
CCTCCTCTCAGGCTTTAAGCAACGGCTCGCCACTGCGACCAGTTGCAGCA
ACAGTAGCAGCTGCAGCAACAGCAGCAGCAGCAGCAGTGATAGTATTTTG
GCAACAGCGAGAAAGGACGTTGCATCCTTGATCTGGTTGGCCAAAGCGCT
GGCCCTTCGGTGCGCCCCAAAGAAGTCAATGGAAGAGGCGGTCTCGTCGC
TCATCTACGTGGCAGGGTGTCCCGGAGGAACAGGAACAGGAGAAAGAGAA
GTTGAATCAGCGGAAATAGAGCCATCTTCTGCCCGTCTAGCCTTAGCTCG
ACAAGCTGCAGAAGGATTTGGTCTCATCCTCCGGGATGCAGTGCCCTCGT
CATCCTCCTCCCTCCCTTCTTCCTCCTCATCCTCACTCATCGAGCGCCTG
CTCGCCCCGCGTCCGGGCACCTCTCGAGTCAACCCCCTCTGGCGGCAACG
GCTCTACTACCTGGCTTTTCCACGTCTACGGGAAGCTGTGGATAAACACC
GTGCCCGATCACAGGCAAAAGCAGCGGCTTTGCTGGCGGTGTGTACCCTG
GTGGGTTCGTTGCCCCAAGCCGTTATCCAGGCCGAGCTCGAGCCTATCAT
GCTCGTGGTCCTGCAGGGAATGTCGTCTGTGTCGAGCAAAAGCGGCAACA
ACGACAGCAGCAATGGTTCAGAGGAGGAGGAGGTGGAAGAGAAGGAAATC
GTAGTTGTTCTCAGGGCGCGGGCGACTGAGACATTTGTTGCGCTGGTCAA
GAACTCTCCCGAGGCAGTAGTGCCGCATCTTGCCACTGCAATTCCTTTGC
TTTATCAACTTTGCACCCCTTCTGACCCCCACTTTTTGCCCAAGGCGAAG
CTGCGTGTGTTGGCGCTGGGGAGTTTGATGGAGATAGCTCGGTTGCCTTA
TGCCAAATTGCATCCCTACAGGGCGACGGTTAGTAGGGGGCTGCTTGCCC
CATTGGATGATCGGAAGCGGGTGGTGAGGCAGATGGCGGTGAAGGTAAGG
AATGAATGGATGATGATGGATAGATAG
back to top
Synonyms
Publications