NO04G01420.1, NO04G01420.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO04G01420.1
Unique NameNO04G01420.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2369
Alignment locationchr4:443931..446299 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:443931..446299 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO04G01420.1 vs.
Match: EWM28539.1 (hypothetical protein Naga_100009g24 [Nannochloropsis gaditana])

HSP 1 Score: 76.6 bits (187), Expect = 1.400e-10
Identity = 85/249 (34.14%), Postives = 110/249 (44.18%), Query Frame = 0
Query:    1 MKRSRSSFNLVELGRGAPLLPSKKLQRALLSSSASSEQLAERLCLSSTGTHPFHADNISMSTLA----RRPALAKVMPSP------RSLDTLGAGARHPTIRPPLHIITLKLLEGCQDDKKEHYGLPDPSSP----SCVPAWAPPPAHDGPCYGQSDNEDEDCPCPLMFKKQSGFICPSPIC---SATTTASSSSGSYMSDNESFESDGSGCNGGGSGTPSSSSTPTEADIMHKLVQEMERLYNTQQQQ 233
            MKR   S NLVELG G+   PSKK  R LLS+SASS+QLAERL             N+ MST       RP   +    P      + L+ L   A       PL     K +   +  K       D S+      CVPAW  P A+D    G               +  SG  CP   C   + TT A+S SGSY+ ++E  + +   C   G G   S S   EAD+ + L++EM+RLYN Q+ Q
Sbjct:    1 MKRCHGSCNLVELGLGSSPKPSKKFHRVLLSTSASSDQLAERL-------------NVPMSTSTIRTYTRPKAFEHFLKPLTFQPCQRLEALSGDASVSPQSAPLP----KHIITVKFPKPCEEEDNDGSATCEHLRCVPAWVAPLAYDELQMG-------------FGRTISGNGCPGTFCGTSTTTTAATSLSGSYIGEDEQRDRENHCCIDQGRGATKSLSKAREADMFNDLIKEMQRLYNAQEGQ 219          
The following BLAST results are available for this feature:
BLAST of NO04G01420.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28539.11.400e-1034.14hypothetical protein Naga_100009g24 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO04G01420NO04G01420Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO04G01420.1NO04G01420.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO04G01420.1.cds1NO04G01420.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO04G01420.1 ID=NO04G01420.1|Name=NO04G01420.1|organism=Nannochloropsis oceanica|type=mRNA|length=2369bp
AAACTATCTTGTTGGGCACCTTGCGACCCCCAAGTTGTTAGAGTATTGCC
AAATTAGTCCCGCCTTTCACATACTGAAGCCACGGTGAGCTGGCACCAAA
GTTTATACGTGGGTGCTCTTCGTGACATCTTCAAGTAGATGTGCAAGAGG
AGTGCGTGTCGTTCTCCAGCTTCAAGGCCAATCCGGCGCCCACGTCGTCC
TCCTTCTCCATCTTATTTGTGTTGTTTCGTCTCGTTCTCTTCTCGTTGGA
GGTATACCTCTGGAGCCTTCGGGAGTCACCTCATCCACACATTTGATGTC
ACGGCCTGTCGAGTTTGTGGGTGGTCAAGGTGCCTGGCAGTTCGCGGCTC
CTCGTTCCCCTTCCAACCCCAAGCGACGAATATGTCTTATCCAAAATCAT
GCCCGCCTCTGCCTTCAATCTTGCGCCCTGGACGTATTTATTTCGTCCAG
AGGGGACAGAAGCTGCACAATCACTCTCCCCATTCATCTAGTTGACCGGC
TTTGCGGGCCGCGCTGTCCAAAGGCCTTCGTCTCATGACCTTGATTGCCT
CGGCCTTCCAACTTTGTGCCGCCTGATTTGATGCTCACGCTTCCCTTGCC
CACCCCAATCCACCCACCACAGCCAACACACAAGAAAACAGCATCACTCA
GACAACTATGAAGCGAAGTCGCAGTAGCTTCAACCTGGTCGAACTCGGCC
GCGGCGCTCCGCTTCTCCCCTCCAAAAAGCTTCAACGGGCGCTCTTGTCC
TCCTCGGCGTCAAGCGAGCAACTTGCTGAACGTCTGTGTTTATCCAGTAC
TGGCACCCACCCCTTTCATGCAGATAATATTTCCATGTCTACCCTGGCGC
GGCGCCCTGCCCTCGCCAAAGTTATGCCTTCCCCTCGTTCCTTGGACACA
TTGGGTGCCGGCGCCCGCCATCCCACTATCCGCCCCCCCCTGCACATTAT
CACGCTCAAGCTCCTCGAAGGCTGCCAAGACGACAAAAAAGAACATTATG
GCCTTCCCGACCCTTCATCACCTTCCTGTGTACCTGCTTGGGCTCCGCCT
CCTGCCCACGACGGGCCGTGCTATGGCCAGTCCGACAATGAGGACGAGGA
CTGCCCTTGCCCTCTTATGTTCAAGAAGCAGAGTGGTTTCATCTGCCCCA
GCCCGATATGTAGCGCCACCACAACCGCTTCCAGCAGCAGTGGTAGCTAT
ATGAGCGATAACGAGTCGTTTGAGAGCGACGGAAGCGGCTGCAATGGCGG
AGGGAGCGGAACTCCCTCTTCCTCGTCCACACCGACCGAGGCTGACATCA
TGCACAAGCTGGTGCAAGAAATGGAGCGCTTATACAACACTCAACAGCAA
CAGCTGCAGCAGCATCATCAATATACAATGCGAACTAAGGCACTGTCGGT
AAGGAGTATTCCCCGCCGGCCGTTTTCCCTCCACTACTGGGAGGACGGAC
CAAACTACCATTCCTCCACCTCGGCAGCAGCAGCAGCAGCAACAGCGGTG
TGTGGGTCCCCAGGCTTGACCACTTAAATGAGCGAATCAGAAGGAAAGAA
CAGGAGTGAAATGGAAGATAAGATTGGCTGAGAGTGACGCCATGAGTGCT
TGAGCACGTCACATAAAGATGGAGAGGGCAATGCGTGTGGCGCATGCATG
TCTCTTTCTCCTCATCCCCATAATTTTTTCTTCAAGCCGTAAGGGACTTG
AAAGACTTAGATTGAGATAACGAAACGAAAACCATAAACCATGTGGGATG
GACAGAATCCCAAAGAAATTTACTGTTGGCTTTGTGCGTGAGAGAGACAG
ACGAAAGAGAGACGATAACAGACGACAGGTTGTCGATATTAGCATGTATA
CGGGGCGCCATGTTCGTAGAAGAGACATGGGATGTGTTGCTAGCTAACTA
CGGACCCATTGTTGAAATCCGTGACGAAGGAACTGATTGTGAACCTTTTT
CATTTTGTACAACATCGCGACTTGAAGAAAAAGGGCGATCAAGACCTGAC
AACCGTGTGTGCATGCATGAGAATCTATCATTTCGAAATAGATGTGGCGG
AAGCCGAGATAAATGAGATAGACTCGTGTGTATATAAAACCCGCCATTCT
TTGTGCACCTCTGTGTGTGTGCGCGCATGCACAAATGAAATATGCCCTTA
TTCGGCCTTTCAGTCATAAGTAAAAGTAAGGAATTTCGTCCATCTCTCCA
CGTGAACTTTTAACACTACCGGCTACAATTAATCACATCCAATTATCTCC
ACTCTGTTATTTTAAGAAATGACTGCATGGGTGAACCATGGAGTGATGGC
AAGCACAAACTCGGTCAAATAAAACAAGAGAAAGAAAACTGGCATGAATT
GGTATATTTTCCATCATTG
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protein sequence of NO04G01420.1

>NO04G01420.1-protein ID=NO04G01420.1-protein|Name=NO04G01420.1|organism=Nannochloropsis oceanica|type=polypeptide|length=290bp
MKRSRSSFNLVELGRGAPLLPSKKLQRALLSSSASSEQLAERLCLSSTGT
HPFHADNISMSTLARRPALAKVMPSPRSLDTLGAGARHPTIRPPLHIITL
KLLEGCQDDKKEHYGLPDPSSPSCVPAWAPPPAHDGPCYGQSDNEDEDCP
CPLMFKKQSGFICPSPICSATTTASSSSGSYMSDNESFESDGSGCNGGGS
GTPSSSSTPTEADIMHKLVQEMERLYNTQQQQLQQHHQYTMRTKALSVRS
IPRRPFSLHYWEDGPNYHSSTSAAAAAATAVCGSPGLTT*
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mRNA from alignment at chr4:443931..446299+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO04G01420.1 ID=NO04G01420.1|Name=NO04G01420.1|organism=Nannochloropsis oceanica|type=mRNA|length=2369bp|location=Sequence derived from alignment at chr4:443931..446299+ (Nannochloropsis oceanica)
AAACTATCTTGTTGGGCACCTTGCGACCCCCAAGTTGTTAGAGTATTGCC AAATTAGTCCCGCCTTTCACATACTGAAGCCACGGTGAGCTGGCACCAAA GTTTATACGTGGGTGCTCTTCGTGACATCTTCAAGTAGATGTGCAAGAGG AGTGCGTGTCGTTCTCCAGCTTCAAGGCCAATCCGGCGCCCACGTCGTCC TCCTTCTCCATCTTATTTGTGTTGTTTCGTCTCGTTCTCTTCTCGTTGGA GGTATACCTCTGGAGCCTTCGGGAGTCACCTCATCCACACATTTGATGTC ACGGCCTGTCGAGTTTGTGGGTGGTCAAGGTGCCTGGCAGTTCGCGGCTC CTCGTTCCCCTTCCAACCCCAAGCGACGAATATGTCTTATCCAAAATCAT GCCCGCCTCTGCCTTCAATCTTGCGCCCTGGACGTATTTATTTCGTCCAG AGGGGACAGAAGCTGCACAATCACTCTCCCCATTCATCTAGTTGACCGGC TTTGCGGGCCGCGCTGTCCAAAGGCCTTCGTCTCATGACCTTGATTGCCT CGGCCTTCCAACTTTGTGCCGCCTGATTTGATGCTCACGCTTCCCTTGCC CACCCCAATCCACCCACCACAGCCAACACACAAGAAAACAGCATCACTCA GACAACTATGAAGCGAAGTCGCAGTAGCTTCAACCTGGTCGAACTCGGCC GCGGCGCTCCGCTTCTCCCCTCCAAAAAGCTTCAACGGGCGCTCTTGTCC TCCTCGGCGTCAAGCGAGCAACTTGCTGAACGTCTGTGTTTATCCAGTAC TGGCACCCACCCCTTTCATGCAGATAATATTTCCATGTCTACCCTGGCGC GGCGCCCTGCCCTCGCCAAAGTTATGCCTTCCCCTCGTTCCTTGGACACA TTGGGTGCCGGCGCCCGCCATCCCACTATCCGCCCCCCCCTGCACATTAT CACGCTCAAGCTCCTCGAAGGCTGCCAAGACGACAAAAAAGAACATTATG GCCTTCCCGACCCTTCATCACCTTCCTGTGTACCTGCTTGGGCTCCGCCT CCTGCCCACGACGGGCCGTGCTATGGCCAGTCCGACAATGAGGACGAGGA CTGCCCTTGCCCTCTTATGTTCAAGAAGCAGAGTGGTTTCATCTGCCCCA GCCCGATATGTAGCGCCACCACAACCGCTTCCAGCAGCAGTGGTAGCTAT ATGAGCGATAACGAGTCGTTTGAGAGCGACGGAAGCGGCTGCAATGGCGG AGGGAGCGGAACTCCCTCTTCCTCGTCCACACCGACCGAGGCTGACATCA TGCACAAGCTGGTGCAAGAAATGGAGCGCTTATACAACACTCAACAGCAA CAGCTGCAGCAGCATCATCAATATACAATGCGAACTAAGGCACTGTCGGT AAGGAGTATTCCCCGCCGGCCGTTTTCCCTCCACTACTGGGAGGACGGAC CAAACTACCATTCCTCCACCTCGGCAGCAGCAGCAGCAGCAACAGCGGTG TGTGGGTCCCCAGGCTTGACCACTTAAATGAGCGAATCAGAAGGAAAGAA CAGGAGTGAAATGGAAGATAAGATTGGCTGAGAGTGACGCCATGAGTGCT TGAGCACGTCACATAAAGATGGAGAGGGCAATGCGTGTGGCGCATGCATG TCTCTTTCTCCTCATCCCCATAATTTTTTCTTCAAGCCGTAAGGGACTTG AAAGACTTAGATTGAGATAACGAAACGAAAACCATAAACCATGTGGGATG GACAGAATCCCAAAGAAATTTACTGTTGGCTTTGTGCGTGAGAGAGACAG ACGAAAGAGAGACGATAACAGACGACAGGTTGTCGATATTAGCATGTATA CGGGGCGCCATGTTCGTAGAAGAGACATGGGATGTGTTGCTAGCTAACTA CGGACCCATTGTTGAAATCCGTGACGAAGGAACTGATTGTGAACCTTTTT CATTTTGTACAACATCGCGACTTGAAGAAAAAGGGCGATCAAGACCTGAC AACCGTGTGTGCATGCATGAGAATCTATCATTTCGAAATAGATGTGGCGG AAGCCGAGATAAATGAGATAGACTCGTGTGTATATAAAACCCGCCATTCT TTGTGCACCTCTGTGTGTGTGCGCGCATGCACAAATGAAATATGCCCTTA TTCGGCCTTTCAGTCATAAGTAAAAGTAAGGAATTTCGTCCATCTCTCCA CGTGAACTTTTAACACTACCGGCTACAATTAATCACATCCAATTATCTCC ACTCTGTTATTTTAAGAAATGACTGCATGGGTGAACCATGGAGTGATGGC AAGCACAAACTCGGTCAAATAAAACAAGAGAAAGAAAACTGGCATGAATT GGTATATTTTCCATCATTG
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Coding sequence (CDS) from alignment at chr4:443931..446299+

>NO04G01420.1 ID=NO04G01420.1|Name=NO04G01420.1|organism=Nannochloropsis oceanica|type=CDS|length=870bp|location=Sequence derived from alignment at chr4:443931..446299+ (Nannochloropsis oceanica)
ATGAAGCGAAGTCGCAGTAGCTTCAACCTGGTCGAACTCGGCCGCGGCGC
TCCGCTTCTCCCCTCCAAAAAGCTTCAACGGGCGCTCTTGTCCTCCTCGG
CGTCAAGCGAGCAACTTGCTGAACGTCTGTGTTTATCCAGTACTGGCACC
CACCCCTTTCATGCAGATAATATTTCCATGTCTACCCTGGCGCGGCGCCC
TGCCCTCGCCAAAGTTATGCCTTCCCCTCGTTCCTTGGACACATTGGGTG
CCGGCGCCCGCCATCCCACTATCCGCCCCCCCCTGCACATTATCACGCTC
AAGCTCCTCGAAGGCTGCCAAGACGACAAAAAAGAACATTATGGCCTTCC
CGACCCTTCATCACCTTCCTGTGTACCTGCTTGGGCTCCGCCTCCTGCCC
ACGACGGGCCGTGCTATGGCCAGTCCGACAATGAGGACGAGGACTGCCCT
TGCCCTCTTATGTTCAAGAAGCAGAGTGGTTTCATCTGCCCCAGCCCGAT
ATGTAGCGCCACCACAACCGCTTCCAGCAGCAGTGGTAGCTATATGAGCG
ATAACGAGTCGTTTGAGAGCGACGGAAGCGGCTGCAATGGCGGAGGGAGC
GGAACTCCCTCTTCCTCGTCCACACCGACCGAGGCTGACATCATGCACAA
GCTGGTGCAAGAAATGGAGCGCTTATACAACACTCAACAGCAACAGCTGC
AGCAGCATCATCAATATACAATGCGAACTAAGGCACTGTCGGTAAGGAGT
ATTCCCCGCCGGCCGTTTTCCCTCCACTACTGGGAGGACGGACCAAACTA
CCATTCCTCCACCTCGGCAGCAGCAGCAGCAGCAACAGCGGTGTGTGGGT
CCCCAGGCTTGACCACTTAA
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Synonyms
Publications