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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr4 | genome | chr4:443931..446299 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO04G01420.1 vs.
Match: EWM28539.1 (hypothetical protein Naga_100009g24 [Nannochloropsis gaditana]) HSP 1 Score: 76.6 bits (187), Expect = 1.400e-10 Identity = 85/249 (34.14%), Postives = 110/249 (44.18%), Query Frame = 0
Query: 1 MKRSRSSFNLVELGRGAPLLPSKKLQRALLSSSASSEQLAERLCLSSTGTHPFHADNISMSTLA----RRPALAKVMPSP------RSLDTLGAGARHPTIRPPLHIITLKLLEGCQDDKKEHYGLPDPSSP----SCVPAWAPPPAHDGPCYGQSDNEDEDCPCPLMFKKQSGFICPSPIC---SATTTASSSSGSYMSDNESFESDGSGCNGGGSGTPSSSSTPTEADIMHKLVQEMERLYNTQQQQ 233
MKR S NLVELG G+ PSKK R LLS+SASS+QLAERL N+ MST RP + P + L+ L A PL K + + K D S+ CVPAW P A+D G + SG CP C + TT A+S SGSY+ ++E + + C G G S S EAD+ + L++EM+RLYN Q+ Q
Sbjct: 1 MKRCHGSCNLVELGLGSSPKPSKKFHRVLLSTSASSDQLAERL-------------NVPMSTSTIRTYTRPKAFEHFLKPLTFQPCQRLEALSGDASVSPQSAPLP----KHIITVKFPKPCEEEDNDGSATCEHLRCVPAWVAPLAYDELQMG-------------FGRTISGNGCPGTFCGTSTTTTAATSLSGSYIGEDEQRDRENHCCIDQGRGATKSLSKAREADMFNDLIKEMQRLYNAQEGQ 219
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO04G01420.1 ID=NO04G01420.1|Name=NO04G01420.1|organism=Nannochloropsis oceanica|type=mRNA|length=2369bp AAACTATCTTGTTGGGCACCTTGCGACCCCCAAGTTGTTAGAGTATTGCC AAATTAGTCCCGCCTTTCACATACTGAAGCCACGGTGAGCTGGCACCAAA GTTTATACGTGGGTGCTCTTCGTGACATCTTCAAGTAGATGTGCAAGAGG AGTGCGTGTCGTTCTCCAGCTTCAAGGCCAATCCGGCGCCCACGTCGTCC TCCTTCTCCATCTTATTTGTGTTGTTTCGTCTCGTTCTCTTCTCGTTGGA GGTATACCTCTGGAGCCTTCGGGAGTCACCTCATCCACACATTTGATGTC ACGGCCTGTCGAGTTTGTGGGTGGTCAAGGTGCCTGGCAGTTCGCGGCTC CTCGTTCCCCTTCCAACCCCAAGCGACGAATATGTCTTATCCAAAATCAT GCCCGCCTCTGCCTTCAATCTTGCGCCCTGGACGTATTTATTTCGTCCAG AGGGGACAGAAGCTGCACAATCACTCTCCCCATTCATCTAGTTGACCGGC TTTGCGGGCCGCGCTGTCCAAAGGCCTTCGTCTCATGACCTTGATTGCCT CGGCCTTCCAACTTTGTGCCGCCTGATTTGATGCTCACGCTTCCCTTGCC CACCCCAATCCACCCACCACAGCCAACACACAAGAAAACAGCATCACTCA GACAACTATGAAGCGAAGTCGCAGTAGCTTCAACCTGGTCGAACTCGGCC GCGGCGCTCCGCTTCTCCCCTCCAAAAAGCTTCAACGGGCGCTCTTGTCC TCCTCGGCGTCAAGCGAGCAACTTGCTGAACGTCTGTGTTTATCCAGTAC TGGCACCCACCCCTTTCATGCAGATAATATTTCCATGTCTACCCTGGCGC GGCGCCCTGCCCTCGCCAAAGTTATGCCTTCCCCTCGTTCCTTGGACACA TTGGGTGCCGGCGCCCGCCATCCCACTATCCGCCCCCCCCTGCACATTAT CACGCTCAAGCTCCTCGAAGGCTGCCAAGACGACAAAAAAGAACATTATG GCCTTCCCGACCCTTCATCACCTTCCTGTGTACCTGCTTGGGCTCCGCCT CCTGCCCACGACGGGCCGTGCTATGGCCAGTCCGACAATGAGGACGAGGA CTGCCCTTGCCCTCTTATGTTCAAGAAGCAGAGTGGTTTCATCTGCCCCA GCCCGATATGTAGCGCCACCACAACCGCTTCCAGCAGCAGTGGTAGCTAT ATGAGCGATAACGAGTCGTTTGAGAGCGACGGAAGCGGCTGCAATGGCGG AGGGAGCGGAACTCCCTCTTCCTCGTCCACACCGACCGAGGCTGACATCA TGCACAAGCTGGTGCAAGAAATGGAGCGCTTATACAACACTCAACAGCAA CAGCTGCAGCAGCATCATCAATATACAATGCGAACTAAGGCACTGTCGGT AAGGAGTATTCCCCGCCGGCCGTTTTCCCTCCACTACTGGGAGGACGGAC CAAACTACCATTCCTCCACCTCGGCAGCAGCAGCAGCAGCAACAGCGGTG TGTGGGTCCCCAGGCTTGACCACTTAAATGAGCGAATCAGAAGGAAAGAA CAGGAGTGAAATGGAAGATAAGATTGGCTGAGAGTGACGCCATGAGTGCT TGAGCACGTCACATAAAGATGGAGAGGGCAATGCGTGTGGCGCATGCATG TCTCTTTCTCCTCATCCCCATAATTTTTTCTTCAAGCCGTAAGGGACTTG AAAGACTTAGATTGAGATAACGAAACGAAAACCATAAACCATGTGGGATG GACAGAATCCCAAAGAAATTTACTGTTGGCTTTGTGCGTGAGAGAGACAG ACGAAAGAGAGACGATAACAGACGACAGGTTGTCGATATTAGCATGTATA CGGGGCGCCATGTTCGTAGAAGAGACATGGGATGTGTTGCTAGCTAACTA CGGACCCATTGTTGAAATCCGTGACGAAGGAACTGATTGTGAACCTTTTT CATTTTGTACAACATCGCGACTTGAAGAAAAAGGGCGATCAAGACCTGAC AACCGTGTGTGCATGCATGAGAATCTATCATTTCGAAATAGATGTGGCGG AAGCCGAGATAAATGAGATAGACTCGTGTGTATATAAAACCCGCCATTCT TTGTGCACCTCTGTGTGTGTGCGCGCATGCACAAATGAAATATGCCCTTA TTCGGCCTTTCAGTCATAAGTAAAAGTAAGGAATTTCGTCCATCTCTCCA CGTGAACTTTTAACACTACCGGCTACAATTAATCACATCCAATTATCTCC ACTCTGTTATTTTAAGAAATGACTGCATGGGTGAACCATGGAGTGATGGC AAGCACAAACTCGGTCAAATAAAACAAGAGAAAGAAAACTGGCATGAATT GGTATATTTTCCATCATTG back to topprotein sequence of NO04G01420.1 >NO04G01420.1-protein ID=NO04G01420.1-protein|Name=NO04G01420.1|organism=Nannochloropsis oceanica|type=polypeptide|length=290bp MKRSRSSFNLVELGRGAPLLPSKKLQRALLSSSASSEQLAERLCLSSTGT HPFHADNISMSTLARRPALAKVMPSPRSLDTLGAGARHPTIRPPLHIITL KLLEGCQDDKKEHYGLPDPSSPSCVPAWAPPPAHDGPCYGQSDNEDEDCP CPLMFKKQSGFICPSPICSATTTASSSSGSYMSDNESFESDGSGCNGGGS GTPSSSSTPTEADIMHKLVQEMERLYNTQQQQLQQHHQYTMRTKALSVRS IPRRPFSLHYWEDGPNYHSSTSAAAAAATAVCGSPGLTT* back to topmRNA from alignment at chr4:443931..446299+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO04G01420.1 ID=NO04G01420.1|Name=NO04G01420.1|organism=Nannochloropsis oceanica|type=mRNA|length=2369bp|location=Sequence derived from alignment at chr4:443931..446299+ (Nannochloropsis oceanica) AAACTATCTTGTTGGGCACCTTGCGACCCCCAAGTTGTTAGAGTATTGCC
AAATTAGTCCCGCCTTTCACATACTGAAGCCACGGTGAGCTGGCACCAAA
GTTTATACGTGGGTGCTCTTCGTGACATCTTCAAGTAGATGTGCAAGAGG
AGTGCGTGTCGTTCTCCAGCTTCAAGGCCAATCCGGCGCCCACGTCGTCC
TCCTTCTCCATCTTATTTGTGTTGTTTCGTCTCGTTCTCTTCTCGTTGGA
GGTATACCTCTGGAGCCTTCGGGAGTCACCTCATCCACACATTTGATGTC
ACGGCCTGTCGAGTTTGTGGGTGGTCAAGGTGCCTGGCAGTTCGCGGCTC
CTCGTTCCCCTTCCAACCCCAAGCGACGAATATGTCTTATCCAAAATCAT
GCCCGCCTCTGCCTTCAATCTTGCGCCCTGGACGTATTTATTTCGTCCAG
AGGGGACAGAAGCTGCACAATCACTCTCCCCATTCATCTAGTTGACCGGC
TTTGCGGGCCGCGCTGTCCAAAGGCCTTCGTCTCATGACCTTGATTGCCT
CGGCCTTCCAACTTTGTGCCGCCTGATTTGATGCTCACGCTTCCCTTGCC
CACCCCAATCCACCCACCACAGCCAACACACAAGAAAACAGCATCACTCA
GACAACTATGAAGCGAAGTCGCAGTAGCTTCAACCTGGTCGAACTCGGCC
GCGGCGCTCCGCTTCTCCCCTCCAAAAAGCTTCAACGGGCGCTCTTGTCC
TCCTCGGCGTCAAGCGAGCAACTTGCTGAACGTCTGTGTTTATCCAGTAC
TGGCACCCACCCCTTTCATGCAGATAATATTTCCATGTCTACCCTGGCGC
GGCGCCCTGCCCTCGCCAAAGTTATGCCTTCCCCTCGTTCCTTGGACACA
TTGGGTGCCGGCGCCCGCCATCCCACTATCCGCCCCCCCCTGCACATTAT
CACGCTCAAGCTCCTCGAAGGCTGCCAAGACGACAAAAAAGAACATTATG
GCCTTCCCGACCCTTCATCACCTTCCTGTGTACCTGCTTGGGCTCCGCCT
CCTGCCCACGACGGGCCGTGCTATGGCCAGTCCGACAATGAGGACGAGGA
CTGCCCTTGCCCTCTTATGTTCAAGAAGCAGAGTGGTTTCATCTGCCCCA
GCCCGATATGTAGCGCCACCACAACCGCTTCCAGCAGCAGTGGTAGCTAT
ATGAGCGATAACGAGTCGTTTGAGAGCGACGGAAGCGGCTGCAATGGCGG
AGGGAGCGGAACTCCCTCTTCCTCGTCCACACCGACCGAGGCTGACATCA
TGCACAAGCTGGTGCAAGAAATGGAGCGCTTATACAACACTCAACAGCAA
CAGCTGCAGCAGCATCATCAATATACAATGCGAACTAAGGCACTGTCGGT
AAGGAGTATTCCCCGCCGGCCGTTTTCCCTCCACTACTGGGAGGACGGAC
CAAACTACCATTCCTCCACCTCGGCAGCAGCAGCAGCAGCAACAGCGGTG
TGTGGGTCCCCAGGCTTGACCACTTAAATGAGCGAATCAGAAGGAAAGAA
CAGGAGTGAAATGGAAGATAAGATTGGCTGAGAGTGACGCCATGAGTGCT
TGAGCACGTCACATAAAGATGGAGAGGGCAATGCGTGTGGCGCATGCATG
TCTCTTTCTCCTCATCCCCATAATTTTTTCTTCAAGCCGTAAGGGACTTG
AAAGACTTAGATTGAGATAACGAAACGAAAACCATAAACCATGTGGGATG
GACAGAATCCCAAAGAAATTTACTGTTGGCTTTGTGCGTGAGAGAGACAG
ACGAAAGAGAGACGATAACAGACGACAGGTTGTCGATATTAGCATGTATA
CGGGGCGCCATGTTCGTAGAAGAGACATGGGATGTGTTGCTAGCTAACTA
CGGACCCATTGTTGAAATCCGTGACGAAGGAACTGATTGTGAACCTTTTT
CATTTTGTACAACATCGCGACTTGAAGAAAAAGGGCGATCAAGACCTGAC
AACCGTGTGTGCATGCATGAGAATCTATCATTTCGAAATAGATGTGGCGG
AAGCCGAGATAAATGAGATAGACTCGTGTGTATATAAAACCCGCCATTCT
TTGTGCACCTCTGTGTGTGTGCGCGCATGCACAAATGAAATATGCCCTTA
TTCGGCCTTTCAGTCATAAGTAAAAGTAAGGAATTTCGTCCATCTCTCCA
CGTGAACTTTTAACACTACCGGCTACAATTAATCACATCCAATTATCTCC
ACTCTGTTATTTTAAGAAATGACTGCATGGGTGAACCATGGAGTGATGGC
AAGCACAAACTCGGTCAAATAAAACAAGAGAAAGAAAACTGGCATGAATT
GGTATATTTTCCATCATTG back to topCoding sequence (CDS) from alignment at chr4:443931..446299+ >NO04G01420.1 ID=NO04G01420.1|Name=NO04G01420.1|organism=Nannochloropsis oceanica|type=CDS|length=870bp|location=Sequence derived from alignment at chr4:443931..446299+ (Nannochloropsis oceanica) ATGAAGCGAAGTCGCAGTAGCTTCAACCTGGTCGAACTCGGCCGCGGCGC TCCGCTTCTCCCCTCCAAAAAGCTTCAACGGGCGCTCTTGTCCTCCTCGG CGTCAAGCGAGCAACTTGCTGAACGTCTGTGTTTATCCAGTACTGGCACC CACCCCTTTCATGCAGATAATATTTCCATGTCTACCCTGGCGCGGCGCCC TGCCCTCGCCAAAGTTATGCCTTCCCCTCGTTCCTTGGACACATTGGGTG CCGGCGCCCGCCATCCCACTATCCGCCCCCCCCTGCACATTATCACGCTC AAGCTCCTCGAAGGCTGCCAAGACGACAAAAAAGAACATTATGGCCTTCC CGACCCTTCATCACCTTCCTGTGTACCTGCTTGGGCTCCGCCTCCTGCCC ACGACGGGCCGTGCTATGGCCAGTCCGACAATGAGGACGAGGACTGCCCT TGCCCTCTTATGTTCAAGAAGCAGAGTGGTTTCATCTGCCCCAGCCCGAT ATGTAGCGCCACCACAACCGCTTCCAGCAGCAGTGGTAGCTATATGAGCG ATAACGAGTCGTTTGAGAGCGACGGAAGCGGCTGCAATGGCGGAGGGAGC GGAACTCCCTCTTCCTCGTCCACACCGACCGAGGCTGACATCATGCACAA GCTGGTGCAAGAAATGGAGCGCTTATACAACACTCAACAGCAACAGCTGC AGCAGCATCATCAATATACAATGCGAACTAAGGCACTGTCGGTAAGGAGT ATTCCCCGCCGGCCGTTTTCCCTCCACTACTGGGAGGACGGACCAAACTA CCATTCCTCCACCTCGGCAGCAGCAGCAGCAGCAACAGCGGTGTGTGGGT CCCCAGGCTTGACCACTTAA back to top
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