NO04G01390.1, NO04G01390.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO04G01390.1
Unique NameNO04G01390.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2513
Alignment locationchr4:435864..438581 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:435864..438581 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO04G01390.1 vs.
Match: EWM28591.1 (aarF domain-containing protein kinase [Nannochloropsis gaditana])

HSP 1 Score: 840.9 bits (2171), Expect = 2.600e-240
Identity = 459/606 (75.74%), Postives = 513/606 (84.65%), Query Frame = 0
Query:   24 TSTARRARTKNAASPGGLVTLLSILVMLASPLRWGAHGIASAFLMRPLQGSRACQIRSSR-----LAMSTRTTDTKPPSAASNSAIPNVIGVLPSFSQLLTSGRALLRDSLRVAQEVGPRAGLARTLSATKAFSETARDLLVELRKYQQQQQQGEDTAVSPFTRATLAKSMRQLFERLGATYIKVGQFIASSPTLFPEEFVLEFQKCLDQSAPVPYSVVRETLRAELGGDKALNEKFEFIDPIPLASASIAQVHVARLRGTGEEVVLKVLKPGVTETLKADLGFIYLVSRLLETLAPDLARTSLGDIVADIRTSILEEVDFRKELTNLEEFRAFLAKSELTAVATCPRVFPALSTQRVLTMERLRGVSLIDLEGIKAYTDDPEGTLIAALNTWSLSVVLCPSFHADVHSGNLLVLEDGRVGFIDFGIVGRLSPETWQAVTEVGEGLVGGDYRVMAQGLIRMGATAAAVDEGKLAGDLQALFERLRTLDPQMVVIADVESQTAAASLQVDEEQVTRLLLEIVEVASSNGLKLPRQFGLLIKQSLYFDRYTRILAPTLDPLRDSRVNFPRTVEEAEKVSSGGRGRMGARRR--EREEDLGVVIDVTPK 623
            +   RR+RT      G LVT  S+L ML+ P R        +F+ +P   SR   I S R     L M+TR+ +  PP++ + +A P+V   LPS  QL   G+ LL++S RVA+EVGPRAG ARTLSATKAFSETARD+LVELR YQQQQQQG  +A SPFTRA LAKS+RQLFERLGATYIK+GQFIASSPTLFPEEFVLEFQKCLDQSAPVPYSVVRETL AELGGDKAL EKFEFIDP+PLASASIAQVHVARLR TGEEVVLKVLKPGVT+TLKADLGFIYL SRL+ETLAPDLARTSLGDIVADIR+SILEEVDF KE  NLEEFR FL ++ +TA ATCP+V+P LST++VLTMERLRGVSLIDLEGI+AYTDDPEG LI ALNTWSLSVVLCPSFHADVHSGNLLVLEDGRVGFIDFGIVGRLSPETW+AVTEVGEG VG DY+ +AQGLIRMGATAAAVDE KLA DL+ALFER+RTLDPQ+VV+AD+E+QTAAAS+ VDE+QVTRLLLEIV+VASSNGLKLPRQFGLLIKQSLYFDRYTRILAPTLDPLRD+RV+FP+TVEEAE V +   GR G RRR  +R +   V+IDVTPK
Sbjct:   28 SQNTRRSRT--IVGRGSLVTFFSLLAMLSCPARCSVS--MCSFVAQPC--SRMNNIYSKRWRRAQLTMTTRSAERPPPASGAAAAAPSV--GLPSLQQLFNGGQVLLQESFRVAREVGPRAGFARTLSATKAFSETARDVLVELRNYQQQQQQGGGSAGSPFTRAALAKSLRQLFERLGATYIKIGQFIASSPTLFPEEFVLEFQKCLDQSAPVPYSVVRETLSAELGGDKALTEKFEFIDPLPLASASIAQVHVARLRATGEEVVLKVLKPGVTDTLKADLGFIYLASRLIETLAPDLARTSLGDIVADIRSSILEEVDFSKEQANLEEFRMFLDQAGVTA-ATCPKVYPELSTRKVLTMERLRGVSLIDLEGIRAYTDDPEGALITALNTWSLSVVLCPSFHADVHSGNLLVLEDGRVGFIDFGIVGRLSPETWRAVTEVGEGFVGQDYQQIAQGLIRMGATAAAVDEEKLAADLEALFERVRTLDPQVVVVADMEAQTAAASVAVDEDQVTRLLLEIVDVASSNGLKLPRQFGLLIKQSLYFDRYTRILAPTLDPLRDTRVSFPKTVEEAEVVVNSQSGRQGPRRRNVKRGDIDDVIIDVTPK 624          
The following BLAST results are available for this feature:
BLAST of NO04G01390.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28591.12.600e-24075.74aarF domain-containing protein kinase [Nannochloro... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO04G01390NO04G01390Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO04G01390.1NO04G01390.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO04G01390.1.cds1NO04G01390.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G01390.1.cds2NO04G01390.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO04G01390.1 ID=NO04G01390.1|Name=NO04G01390.1|organism=Nannochloropsis oceanica|type=mRNA|length=2513bp
ACCGCAGGGCGAGAAATGCGCGTGCCAACTGAGCTGCAGCAGTCTTCCCA
GCTTCCTGCCTCCGCGCCCACATCAACGCGTAGCACCAGCACTGCTCGAC
GAGCCAGAACAAAAAACGCAGCATCGCCCGGCGGCTTAGTCACCCTATTG
TCGATCCTGGTCATGCTGGCTAGTCCCTTGCGCTGGGGTGCGCATGGTAT
TGCTTCTGCCTTTCTGATGCGGCCGCTTCAGGGCTCCCGCGCCTGTCAAA
TTCGCAGCAGCCGACTGGCAATGAGCACCCGCACCACAGACACCAAGCCC
CCTTCTGCTGCGTCCAACTCCGCCATTCCTAATGTAATCGGCGTCCTTCC
CAGCTTTTCGCAGCTCTTGACCAGTGGGCGAGCCCTTTTACGAGATTCAT
TGCGCGTAGCCCAGGAAGTGGGGCCCAGAGCTGGACTTGCCCGGACATTG
AGTGCTACCAAGGCCTTCAGCGAGACGGCACGCGATTTGCTCGTGGAGCT
ACGCAAGTACCAGCAACAACAGCAGCAGGGTGAGGATACAGCAGTGTCGC
CGTTTACGCGCGCGACCTTGGCAAAGTCGATGCGTCAATTGTTCGAAAGG
CTTGGGGCGACGTACATTAAGGTCGGGCAATTTATCGCCTCTAGTCCCAC
CCTCTTTCCCGAAGAATTCGTGCTGGAATTTCAAAAATGCCTTGACCAAA
GCGCTCCCGTCCCATACAGCGTCGTGCGCGAGACCCTCAGGGCAGAGCTA
GGAGGGGATAAGGCGTTAAACGAGAAATTTGAATTCATCGACCCAATCCC
TTTGGCCAGCGCGTCCATCGCTCAAGTCCACGTGGCCCGCCTCCGAGGAA
CTGGGGAGGAGGTTGTCTTAAAGGTACTTAAACCGGGCGTGACTGAGACG
TTGAAAGCAGATCTGGGGTTTATATACCTCGTCTCTCGCTTGCTCGAAAC
GCTGGCGCCCGACCTGGCACGCACGTCGCTTGGGGATATTGTCGCTGATA
TTCGAACGTCCATTTTGGAGGAGGTGGATTTCAGAAAGGAACTTACAAAT
TTGGAAGAATTTCGCGCGTTTTTGGCGAAGTCAGAATTGACGGCGGTCGC
AACGTGTCCGAGAGTTTTCCCTGCGTTGAGCACGCAGAGGGTGCTGACGA
TGGAGAGGCTGCGGGGGGTGAGTTTGATTGATTTGGAGGGGATCAAGGCG
TACACGGATGATCCAGAGGGAACTCTGATCGCGGCTTTGAATACCTGGAG
TTTGTCCGTCGTGCTATGTCCGAGTTTCCATGCTGATGTGCACAGTGGGA
ATTTATTGGTCCTGGAGGACGGACGTGTTGGCTTCATTGATTTTGGGATT
GTCGGACGGTTGTCGCCCGAGACCTGGCAGGCAGTGACGGAAGTGGGAGA
AGGGTTGGTGGGAGGGGACTACCGAGTCATGGCTCAGGGCTTGATTCGGA
TGGGAGCGACGGCGGCGGCGGTGGATGAAGGGAAGCTCGCGGGGGATCTG
CAGGCGTTGTTTGAACGGTTGAGGACGTTGGACCCACAGATGGTGGTGAT
TGCGGATGTAGAGAGCCAGACGGCGGCGGCGTCTCTGCAAGTCGATGAAG
AGCAAGTCACGAGATTGTTATTGGAGATTGTGGAAGTGGCTAGTAGTAAC
GGCTTGAAACTGCCTAGGCAGTTTGGATTGTTGATAAAGCAAAGTCTTTA
CTTTGACCGGTATACGCGGATATTGGCTCCTACGTTAGATCCGTTGAGAG
ATTCAAGAGTGAATTTTCCACGAACGGTGGAGGAGGCGGAGAAAGTATCG
TCTGGGGGTAGAGGAAGGATGGGGGCACGAAGGAGGGAGAGGGAGGAAGA
CTTGGGCGTCGTCATAGATGTGACGCCTAAAAAGTAGGGAGGACGGGAGG
GAAGAAAAGTGTGAGGGTGCCCAAAAATGTAGAGTTATTGATAGAGAAAT
GGAATGAAAAATAAAAAGGGGCTTTAGAGTGATTTCAAGAAGACAAGATA
CTTTGAACTGTGTCATTTCCTCCCTTGCTTTTGTGTCGGGTCTTATCATT
TTACATCCAACCCTCTGCCAGTTTCCTCCGCGTATCGCTCGCTTCCGGGT
CGTAATACATGGCCAATACCTGCCAGAGCTGCGCATGCAGCGCGACCGCA
GTCCTCTTACAGCTGCTCCAAGCGTCATTTTTATCGTTGTTGTTGTTGTT
GTCGTTGCTGCTGCTGCTGCTGCTGCTGCATCTCTTGCTCATGAATGCTT
CCTCCTTTTCCGGTTCACTCTTCCACTGAACAAACACCAGACCATTCGTT
ACATCTCTCACGTGGGCCGTTTTCAAGGCCTCCTTGTACCTATGCACCGC
TGCATCCTGTGCTAGAGCTGTGGCAGTATCCTCCAGTCGATAATTATGGA
TAAGAGCGGAGTACTCAGCCAGCGACCACTTTAATCCGTGAAAAGCCTTG
ATGTATAATCTCTGTTGTTTCTGCTGCTGCTGCTGCTCCTGTTGTTGTTG
TTGTTGTTGTTGT
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protein sequence of NO04G01390.1

>NO04G01390.1-protein ID=NO04G01390.1-protein|Name=NO04G01390.1|organism=Nannochloropsis oceanica|type=polypeptide|length=624bp
MRVPTELQQSSQLPASAPTSTRSTSTARRARTKNAASPGGLVTLLSILVM
LASPLRWGAHGIASAFLMRPLQGSRACQIRSSRLAMSTRTTDTKPPSAAS
NSAIPNVIGVLPSFSQLLTSGRALLRDSLRVAQEVGPRAGLARTLSATKA
FSETARDLLVELRKYQQQQQQGEDTAVSPFTRATLAKSMRQLFERLGATY
IKVGQFIASSPTLFPEEFVLEFQKCLDQSAPVPYSVVRETLRAELGGDKA
LNEKFEFIDPIPLASASIAQVHVARLRGTGEEVVLKVLKPGVTETLKADL
GFIYLVSRLLETLAPDLARTSLGDIVADIRTSILEEVDFRKELTNLEEFR
AFLAKSELTAVATCPRVFPALSTQRVLTMERLRGVSLIDLEGIKAYTDDP
EGTLIAALNTWSLSVVLCPSFHADVHSGNLLVLEDGRVGFIDFGIVGRLS
PETWQAVTEVGEGLVGGDYRVMAQGLIRMGATAAAVDEGKLAGDLQALFE
RLRTLDPQMVVIADVESQTAAASLQVDEEQVTRLLLEIVEVASSNGLKLP
RQFGLLIKQSLYFDRYTRILAPTLDPLRDSRVNFPRTVEEAEKVSSGGRG
RMGARRREREEDLGVVIDVTPKK*
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mRNA from alignment at chr4:435864..438581+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO04G01390.1 ID=NO04G01390.1|Name=NO04G01390.1|organism=Nannochloropsis oceanica|type=mRNA|length=2718bp|location=Sequence derived from alignment at chr4:435864..438581+ (Nannochloropsis oceanica)
ACCGCAGGGCGAGAAATGCGCGTGCCAACTGAGCTGCAGCAGTCTTCCCA GCTTCCTGCCTCCGCGCCCACATCAACGCGTAGCACCAGCACTGCTCGAC GAGCCAGAACAAAAAACGCAGCATCGCCCGGCGGCTTAGTCACCCTATTG TCGATCCTGGTCATGCTGGCTAGTCCCTTGCGCTGGGGTGCGCATGGTAT TGCTTCTGCCTTTCTGATGCGGCCGCTTCAGGGCTCCCGCGCCTGTCAAA TTCGCAGCAGCCGACTGGCAATGAGCACCCGCACCACAGACACCAAGCCC CCTTCTGCTGCGTCCAACTCCGCCATTCCTAATGTAATCGGCGTCCTTCC CAGCTTTTCGCAGCTCTTGACCAGTGGGCGAGCCCTTTTACGAGATTCAT TGCGCGTAGCCCAGGAAGTGGGGCCCAGAGCTGGACTTGCCCGGACATTG AGTGCTACCAAGGCCTTCAGCGAGACGGCACGCGATTTGCTCGTGGAGCT ACGCAAGTACCAGCAACAACAGCAGCAGGGTGAGGATACAGCAGTGTCGC CGTTTACGCGCGCGACCTTGGCAAAGTCGATGCGTCAATTGTTCGAAAGG CTTGGGGCGACGTACATTAAGGTTAGTGGTATGAGATGGAGAGGGAGGGA GAGAGGGAGAAAGGAAGTAAGGATGAGTACCTTGTCATCTTTTACGATGA TAACCTTGTCATCTTTTCGTCGACCAGAAAAGAATTGAATATGGGTTGTG AAGAGCTTTAGCAATCAATGCAAATACTTGCACTCACCAACCTCCATCCC TCTGTCCCCCCATCCCATCCTCACAGGTCGGGCAATTTATCGCCTCTAGT CCCACCCTCTTTCCCGAAGAATTCGTGCTGGAATTTCAAAAATGCCTTGA CCAAAGCGCTCCCGTCCCATACAGCGTCGTGCGCGAGACCCTCAGGGCAG AGCTAGGAGGGGATAAGGCGTTAAACGAGAAATTTGAATTCATCGACCCA ATCCCTTTGGCCAGCGCGTCCATCGCTCAAGTCCACGTGGCCCGCCTCCG AGGAACTGGGGAGGAGGTTGTCTTAAAGGTACTTAAACCGGGCGTGACTG AGACGTTGAAAGCAGATCTGGGGTTTATATACCTCGTCTCTCGCTTGCTC GAAACGCTGGCGCCCGACCTGGCACGCACGTCGCTTGGGGATATTGTCGC TGATATTCGAACGTCCATTTTGGAGGAGGTGGATTTCAGAAAGGAACTTA CAAATTTGGAAGAATTTCGCGCGTTTTTGGCGAAGTCAGAATTGACGGCG GTCGCAACGTGTCCGAGAGTTTTCCCTGCGTTGAGCACGCAGAGGGTGCT GACGATGGAGAGGCTGCGGGGGGTGAGTTTGATTGATTTGGAGGGGATCA AGGCGTACACGGATGATCCAGAGGGAACTCTGATCGCGGCTTTGAATACC TGGAGTTTGTCCGTCGTGCTATGTCCGAGTTTCCATGCTGATGTGCACAG TGGGAATTTATTGGTCCTGGAGGACGGACGTGTTGGCTTCATTGATTTTG GGATTGTCGGACGGTTGTCGCCCGAGACCTGGCAGGCAGTGACGGAAGTG GGAGAAGGGTTGGTGGGAGGGGACTACCGAGTCATGGCTCAGGGCTTGAT TCGGATGGGAGCGACGGCGGCGGCGGTGGATGAAGGGAAGCTCGCGGGGG ATCTGCAGGCGTTGTTTGAACGGTTGAGGACGTTGGACCCACAGATGGTG GTGATTGCGGATGTAGAGAGCCAGACGGCGGCGGCGTCTCTGCAAGTCGA TGAAGAGCAAGTCACGAGATTGTTATTGGAGATTGTGGAAGTGGCTAGTA GTAACGGCTTGAAACTGCCTAGGCAGTTTGGATTGTTGATAAAGCAAAGT CTTTACTTTGACCGGTATACGCGGATATTGGCTCCTACGTTAGATCCGTT GAGAGATTCAAGAGTGAATTTTCCACGAACGGTGGAGGAGGCGGAGAAAG TATCGTCTGGGGGTAGAGGAAGGATGGGGGCACGAAGGAGGGAGAGGGAG GAAGACTTGGGCGTCGTCATAGATGTGACGCCTAAAAAGTAGGGAGGACG GGAGGGAAGAAAAGTGTGAGGGTGCCCAAAAATGTAGAGTTATTGATAGA GAAATGGAATGAAAAATAAAAAGGGGCTTTAGAGTGATTTCAAGAAGACA AGATACTTTGAACTGTGTCATTTCCTCCCTTGCTTTTGTGTCGGGTCTTA TCATTTTACATCCAACCCTCTGCCAGTTTCCTCCGCGTATCGCTCGCTTC CGGGTCGTAATACATGGCCAATACCTGCCAGAGCTGCGCATGCAGCGCGA CCGCAGTCCTCTTACAGCTGCTCCAAGCGTCATTTTTATCGTTGTTGTTG TTGTTGTCGTTGCTGCTGCTGCTGCTGCTGCTGCATCTCTTGCTCATGAA TGCTTCCTCCTTTTCCGGTTCACTCTTCCACTGAACAAACACCAGACCAT TCGTTACATCTCTCACGTGGGCCGTTTTCAAGGCCTCCTTGTACCTATGC ACCGCTGCATCCTGTGCTAGAGCTGTGGCAGTATCCTCCAGTCGATAATT ATGGATAAGAGCGGAGTACTCAGCCAGCGACCACTTTAATCCGTGAAAAG CCTTGATGTATAATCTCTGTTGTTTCTGCTGCTGCTGCTGCTCCTGTTGT TGTTGTTGTTGTTGTTGT
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Coding sequence (CDS) from alignment at chr4:435864..438581+

>NO04G01390.1 ID=NO04G01390.1|Name=NO04G01390.1|organism=Nannochloropsis oceanica|type=CDS|length=1872bp|location=Sequence derived from alignment at chr4:435864..438581+ (Nannochloropsis oceanica)
ATGCGCGTGCCAACTGAGCTGCAGCAGTCTTCCCAGCTTCCTGCCTCCGC
GCCCACATCAACGCGTAGCACCAGCACTGCTCGACGAGCCAGAACAAAAA
ACGCAGCATCGCCCGGCGGCTTAGTCACCCTATTGTCGATCCTGGTCATG
CTGGCTAGTCCCTTGCGCTGGGGTGCGCATGGTATTGCTTCTGCCTTTCT
GATGCGGCCGCTTCAGGGCTCCCGCGCCTGTCAAATTCGCAGCAGCCGAC
TGGCAATGAGCACCCGCACCACAGACACCAAGCCCCCTTCTGCTGCGTCC
AACTCCGCCATTCCTAATGTAATCGGCGTCCTTCCCAGCTTTTCGCAGCT
CTTGACCAGTGGGCGAGCCCTTTTACGAGATTCATTGCGCGTAGCCCAGG
AAGTGGGGCCCAGAGCTGGACTTGCCCGGACATTGAGTGCTACCAAGGCC
TTCAGCGAGACGGCACGCGATTTGCTCGTGGAGCTACGCAAGTACCAGCA
ACAACAGCAGCAGGGTGAGGATACAGCAGTGTCGCCGTTTACGCGCGCGA
CCTTGGCAAAGTCGATGCGTCAATTGTTCGAAAGGCTTGGGGCGACGTAC
ATTAAGGTCGGGCAATTTATCGCCTCTAGTCCCACCCTCTTTCCCGAAGA
ATTCGTGCTGGAATTTCAAAAATGCCTTGACCAAAGCGCTCCCGTCCCAT
ACAGCGTCGTGCGCGAGACCCTCAGGGCAGAGCTAGGAGGGGATAAGGCG
TTAAACGAGAAATTTGAATTCATCGACCCAATCCCTTTGGCCAGCGCGTC
CATCGCTCAAGTCCACGTGGCCCGCCTCCGAGGAACTGGGGAGGAGGTTG
TCTTAAAGGTACTTAAACCGGGCGTGACTGAGACGTTGAAAGCAGATCTG
GGGTTTATATACCTCGTCTCTCGCTTGCTCGAAACGCTGGCGCCCGACCT
GGCACGCACGTCGCTTGGGGATATTGTCGCTGATATTCGAACGTCCATTT
TGGAGGAGGTGGATTTCAGAAAGGAACTTACAAATTTGGAAGAATTTCGC
GCGTTTTTGGCGAAGTCAGAATTGACGGCGGTCGCAACGTGTCCGAGAGT
TTTCCCTGCGTTGAGCACGCAGAGGGTGCTGACGATGGAGAGGCTGCGGG
GGGTGAGTTTGATTGATTTGGAGGGGATCAAGGCGTACACGGATGATCCA
GAGGGAACTCTGATCGCGGCTTTGAATACCTGGAGTTTGTCCGTCGTGCT
ATGTCCGAGTTTCCATGCTGATGTGCACAGTGGGAATTTATTGGTCCTGG
AGGACGGACGTGTTGGCTTCATTGATTTTGGGATTGTCGGACGGTTGTCG
CCCGAGACCTGGCAGGCAGTGACGGAAGTGGGAGAAGGGTTGGTGGGAGG
GGACTACCGAGTCATGGCTCAGGGCTTGATTCGGATGGGAGCGACGGCGG
CGGCGGTGGATGAAGGGAAGCTCGCGGGGGATCTGCAGGCGTTGTTTGAA
CGGTTGAGGACGTTGGACCCACAGATGGTGGTGATTGCGGATGTAGAGAG
CCAGACGGCGGCGGCGTCTCTGCAAGTCGATGAAGAGCAAGTCACGAGAT
TGTTATTGGAGATTGTGGAAGTGGCTAGTAGTAACGGCTTGAAACTGCCT
AGGCAGTTTGGATTGTTGATAAAGCAAAGTCTTTACTTTGACCGGTATAC
GCGGATATTGGCTCCTACGTTAGATCCGTTGAGAGATTCAAGAGTGAATT
TTCCACGAACGGTGGAGGAGGCGGAGAAAGTATCGTCTGGGGGTAGAGGA
AGGATGGGGGCACGAAGGAGGGAGAGGGAGGAAGACTTGGGCGTCGTCAT
AGATGTGACGCCTAAAAAGTAG
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Synonyms
Publications