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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr4 | genome | chr4:435864..438581 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO04G01390.1 vs.
Match: EWM28591.1 (aarF domain-containing protein kinase [Nannochloropsis gaditana]) HSP 1 Score: 840.9 bits (2171), Expect = 2.600e-240 Identity = 459/606 (75.74%), Postives = 513/606 (84.65%), Query Frame = 0
Query: 24 TSTARRARTKNAASPGGLVTLLSILVMLASPLRWGAHGIASAFLMRPLQGSRACQIRSSR-----LAMSTRTTDTKPPSAASNSAIPNVIGVLPSFSQLLTSGRALLRDSLRVAQEVGPRAGLARTLSATKAFSETARDLLVELRKYQQQQQQGEDTAVSPFTRATLAKSMRQLFERLGATYIKVGQFIASSPTLFPEEFVLEFQKCLDQSAPVPYSVVRETLRAELGGDKALNEKFEFIDPIPLASASIAQVHVARLRGTGEEVVLKVLKPGVTETLKADLGFIYLVSRLLETLAPDLARTSLGDIVADIRTSILEEVDFRKELTNLEEFRAFLAKSELTAVATCPRVFPALSTQRVLTMERLRGVSLIDLEGIKAYTDDPEGTLIAALNTWSLSVVLCPSFHADVHSGNLLVLEDGRVGFIDFGIVGRLSPETWQAVTEVGEGLVGGDYRVMAQGLIRMGATAAAVDEGKLAGDLQALFERLRTLDPQMVVIADVESQTAAASLQVDEEQVTRLLLEIVEVASSNGLKLPRQFGLLIKQSLYFDRYTRILAPTLDPLRDSRVNFPRTVEEAEKVSSGGRGRMGARRR--EREEDLGVVIDVTPK 623
+ RR+RT G LVT S+L ML+ P R +F+ +P SR I S R L M+TR+ + PP++ + +A P+V LPS QL G+ LL++S RVA+EVGPRAG ARTLSATKAFSETARD+LVELR YQQQQQQG +A SPFTRA LAKS+RQLFERLGATYIK+GQFIASSPTLFPEEFVLEFQKCLDQSAPVPYSVVRETL AELGGDKAL EKFEFIDP+PLASASIAQVHVARLR TGEEVVLKVLKPGVT+TLKADLGFIYL SRL+ETLAPDLARTSLGDIVADIR+SILEEVDF KE NLEEFR FL ++ +TA ATCP+V+P LST++VLTMERLRGVSLIDLEGI+AYTDDPEG LI ALNTWSLSVVLCPSFHADVHSGNLLVLEDGRVGFIDFGIVGRLSPETW+AVTEVGEG VG DY+ +AQGLIRMGATAAAVDE KLA DL+ALFER+RTLDPQ+VV+AD+E+QTAAAS+ VDE+QVTRLLLEIV+VASSNGLKLPRQFGLLIKQSLYFDRYTRILAPTLDPLRD+RV+FP+TVEEAE V + GR G RRR +R + V+IDVTPK
Sbjct: 28 SQNTRRSRT--IVGRGSLVTFFSLLAMLSCPARCSVS--MCSFVAQPC--SRMNNIYSKRWRRAQLTMTTRSAERPPPASGAAAAAPSV--GLPSLQQLFNGGQVLLQESFRVAREVGPRAGFARTLSATKAFSETARDVLVELRNYQQQQQQGGGSAGSPFTRAALAKSLRQLFERLGATYIKIGQFIASSPTLFPEEFVLEFQKCLDQSAPVPYSVVRETLSAELGGDKALTEKFEFIDPLPLASASIAQVHVARLRATGEEVVLKVLKPGVTDTLKADLGFIYLASRLIETLAPDLARTSLGDIVADIRSSILEEVDFSKEQANLEEFRMFLDQAGVTA-ATCPKVYPELSTRKVLTMERLRGVSLIDLEGIRAYTDDPEGALITALNTWSLSVVLCPSFHADVHSGNLLVLEDGRVGFIDFGIVGRLSPETWRAVTEVGEGFVGQDYQQIAQGLIRMGATAAAVDEEKLAADLEALFERVRTLDPQVVVVADMEAQTAAASVAVDEDQVTRLLLEIVDVASSNGLKLPRQFGLLIKQSLYFDRYTRILAPTLDPLRDTRVSFPKTVEEAEVVVNSQSGRQGPRRRNVKRGDIDDVIIDVTPK 624
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO04G01390.1 ID=NO04G01390.1|Name=NO04G01390.1|organism=Nannochloropsis oceanica|type=mRNA|length=2513bp ACCGCAGGGCGAGAAATGCGCGTGCCAACTGAGCTGCAGCAGTCTTCCCA GCTTCCTGCCTCCGCGCCCACATCAACGCGTAGCACCAGCACTGCTCGAC GAGCCAGAACAAAAAACGCAGCATCGCCCGGCGGCTTAGTCACCCTATTG TCGATCCTGGTCATGCTGGCTAGTCCCTTGCGCTGGGGTGCGCATGGTAT TGCTTCTGCCTTTCTGATGCGGCCGCTTCAGGGCTCCCGCGCCTGTCAAA TTCGCAGCAGCCGACTGGCAATGAGCACCCGCACCACAGACACCAAGCCC CCTTCTGCTGCGTCCAACTCCGCCATTCCTAATGTAATCGGCGTCCTTCC CAGCTTTTCGCAGCTCTTGACCAGTGGGCGAGCCCTTTTACGAGATTCAT TGCGCGTAGCCCAGGAAGTGGGGCCCAGAGCTGGACTTGCCCGGACATTG AGTGCTACCAAGGCCTTCAGCGAGACGGCACGCGATTTGCTCGTGGAGCT ACGCAAGTACCAGCAACAACAGCAGCAGGGTGAGGATACAGCAGTGTCGC CGTTTACGCGCGCGACCTTGGCAAAGTCGATGCGTCAATTGTTCGAAAGG CTTGGGGCGACGTACATTAAGGTCGGGCAATTTATCGCCTCTAGTCCCAC CCTCTTTCCCGAAGAATTCGTGCTGGAATTTCAAAAATGCCTTGACCAAA GCGCTCCCGTCCCATACAGCGTCGTGCGCGAGACCCTCAGGGCAGAGCTA GGAGGGGATAAGGCGTTAAACGAGAAATTTGAATTCATCGACCCAATCCC TTTGGCCAGCGCGTCCATCGCTCAAGTCCACGTGGCCCGCCTCCGAGGAA CTGGGGAGGAGGTTGTCTTAAAGGTACTTAAACCGGGCGTGACTGAGACG TTGAAAGCAGATCTGGGGTTTATATACCTCGTCTCTCGCTTGCTCGAAAC GCTGGCGCCCGACCTGGCACGCACGTCGCTTGGGGATATTGTCGCTGATA TTCGAACGTCCATTTTGGAGGAGGTGGATTTCAGAAAGGAACTTACAAAT TTGGAAGAATTTCGCGCGTTTTTGGCGAAGTCAGAATTGACGGCGGTCGC AACGTGTCCGAGAGTTTTCCCTGCGTTGAGCACGCAGAGGGTGCTGACGA TGGAGAGGCTGCGGGGGGTGAGTTTGATTGATTTGGAGGGGATCAAGGCG TACACGGATGATCCAGAGGGAACTCTGATCGCGGCTTTGAATACCTGGAG TTTGTCCGTCGTGCTATGTCCGAGTTTCCATGCTGATGTGCACAGTGGGA ATTTATTGGTCCTGGAGGACGGACGTGTTGGCTTCATTGATTTTGGGATT GTCGGACGGTTGTCGCCCGAGACCTGGCAGGCAGTGACGGAAGTGGGAGA AGGGTTGGTGGGAGGGGACTACCGAGTCATGGCTCAGGGCTTGATTCGGA TGGGAGCGACGGCGGCGGCGGTGGATGAAGGGAAGCTCGCGGGGGATCTG CAGGCGTTGTTTGAACGGTTGAGGACGTTGGACCCACAGATGGTGGTGAT TGCGGATGTAGAGAGCCAGACGGCGGCGGCGTCTCTGCAAGTCGATGAAG AGCAAGTCACGAGATTGTTATTGGAGATTGTGGAAGTGGCTAGTAGTAAC GGCTTGAAACTGCCTAGGCAGTTTGGATTGTTGATAAAGCAAAGTCTTTA CTTTGACCGGTATACGCGGATATTGGCTCCTACGTTAGATCCGTTGAGAG ATTCAAGAGTGAATTTTCCACGAACGGTGGAGGAGGCGGAGAAAGTATCG TCTGGGGGTAGAGGAAGGATGGGGGCACGAAGGAGGGAGAGGGAGGAAGA CTTGGGCGTCGTCATAGATGTGACGCCTAAAAAGTAGGGAGGACGGGAGG GAAGAAAAGTGTGAGGGTGCCCAAAAATGTAGAGTTATTGATAGAGAAAT GGAATGAAAAATAAAAAGGGGCTTTAGAGTGATTTCAAGAAGACAAGATA CTTTGAACTGTGTCATTTCCTCCCTTGCTTTTGTGTCGGGTCTTATCATT TTACATCCAACCCTCTGCCAGTTTCCTCCGCGTATCGCTCGCTTCCGGGT CGTAATACATGGCCAATACCTGCCAGAGCTGCGCATGCAGCGCGACCGCA GTCCTCTTACAGCTGCTCCAAGCGTCATTTTTATCGTTGTTGTTGTTGTT GTCGTTGCTGCTGCTGCTGCTGCTGCTGCATCTCTTGCTCATGAATGCTT CCTCCTTTTCCGGTTCACTCTTCCACTGAACAAACACCAGACCATTCGTT ACATCTCTCACGTGGGCCGTTTTCAAGGCCTCCTTGTACCTATGCACCGC TGCATCCTGTGCTAGAGCTGTGGCAGTATCCTCCAGTCGATAATTATGGA TAAGAGCGGAGTACTCAGCCAGCGACCACTTTAATCCGTGAAAAGCCTTG ATGTATAATCTCTGTTGTTTCTGCTGCTGCTGCTGCTCCTGTTGTTGTTG TTGTTGTTGTTGT back to topprotein sequence of NO04G01390.1 >NO04G01390.1-protein ID=NO04G01390.1-protein|Name=NO04G01390.1|organism=Nannochloropsis oceanica|type=polypeptide|length=624bp MRVPTELQQSSQLPASAPTSTRSTSTARRARTKNAASPGGLVTLLSILVM LASPLRWGAHGIASAFLMRPLQGSRACQIRSSRLAMSTRTTDTKPPSAAS NSAIPNVIGVLPSFSQLLTSGRALLRDSLRVAQEVGPRAGLARTLSATKA FSETARDLLVELRKYQQQQQQGEDTAVSPFTRATLAKSMRQLFERLGATY IKVGQFIASSPTLFPEEFVLEFQKCLDQSAPVPYSVVRETLRAELGGDKA LNEKFEFIDPIPLASASIAQVHVARLRGTGEEVVLKVLKPGVTETLKADL GFIYLVSRLLETLAPDLARTSLGDIVADIRTSILEEVDFRKELTNLEEFR AFLAKSELTAVATCPRVFPALSTQRVLTMERLRGVSLIDLEGIKAYTDDP EGTLIAALNTWSLSVVLCPSFHADVHSGNLLVLEDGRVGFIDFGIVGRLS PETWQAVTEVGEGLVGGDYRVMAQGLIRMGATAAAVDEGKLAGDLQALFE RLRTLDPQMVVIADVESQTAAASLQVDEEQVTRLLLEIVEVASSNGLKLP RQFGLLIKQSLYFDRYTRILAPTLDPLRDSRVNFPRTVEEAEKVSSGGRG RMGARRREREEDLGVVIDVTPKK* back to topmRNA from alignment at chr4:435864..438581+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO04G01390.1 ID=NO04G01390.1|Name=NO04G01390.1|organism=Nannochloropsis oceanica|type=mRNA|length=2718bp|location=Sequence derived from alignment at chr4:435864..438581+ (Nannochloropsis oceanica) ACCGCAGGGCGAGAAATGCGCGTGCCAACTGAGCTGCAGCAGTCTTCCCA
GCTTCCTGCCTCCGCGCCCACATCAACGCGTAGCACCAGCACTGCTCGAC
GAGCCAGAACAAAAAACGCAGCATCGCCCGGCGGCTTAGTCACCCTATTG
TCGATCCTGGTCATGCTGGCTAGTCCCTTGCGCTGGGGTGCGCATGGTAT
TGCTTCTGCCTTTCTGATGCGGCCGCTTCAGGGCTCCCGCGCCTGTCAAA
TTCGCAGCAGCCGACTGGCAATGAGCACCCGCACCACAGACACCAAGCCC
CCTTCTGCTGCGTCCAACTCCGCCATTCCTAATGTAATCGGCGTCCTTCC
CAGCTTTTCGCAGCTCTTGACCAGTGGGCGAGCCCTTTTACGAGATTCAT
TGCGCGTAGCCCAGGAAGTGGGGCCCAGAGCTGGACTTGCCCGGACATTG
AGTGCTACCAAGGCCTTCAGCGAGACGGCACGCGATTTGCTCGTGGAGCT
ACGCAAGTACCAGCAACAACAGCAGCAGGGTGAGGATACAGCAGTGTCGC
CGTTTACGCGCGCGACCTTGGCAAAGTCGATGCGTCAATTGTTCGAAAGG
CTTGGGGCGACGTACATTAAGGTTAGTGGTATGAGATGGAGAGGGAGGGA
GAGAGGGAGAAAGGAAGTAAGGATGAGTACCTTGTCATCTTTTACGATGA
TAACCTTGTCATCTTTTCGTCGACCAGAAAAGAATTGAATATGGGTTGTG
AAGAGCTTTAGCAATCAATGCAAATACTTGCACTCACCAACCTCCATCCC
TCTGTCCCCCCATCCCATCCTCACAGGTCGGGCAATTTATCGCCTCTAGT
CCCACCCTCTTTCCCGAAGAATTCGTGCTGGAATTTCAAAAATGCCTTGA
CCAAAGCGCTCCCGTCCCATACAGCGTCGTGCGCGAGACCCTCAGGGCAG
AGCTAGGAGGGGATAAGGCGTTAAACGAGAAATTTGAATTCATCGACCCA
ATCCCTTTGGCCAGCGCGTCCATCGCTCAAGTCCACGTGGCCCGCCTCCG
AGGAACTGGGGAGGAGGTTGTCTTAAAGGTACTTAAACCGGGCGTGACTG
AGACGTTGAAAGCAGATCTGGGGTTTATATACCTCGTCTCTCGCTTGCTC
GAAACGCTGGCGCCCGACCTGGCACGCACGTCGCTTGGGGATATTGTCGC
TGATATTCGAACGTCCATTTTGGAGGAGGTGGATTTCAGAAAGGAACTTA
CAAATTTGGAAGAATTTCGCGCGTTTTTGGCGAAGTCAGAATTGACGGCG
GTCGCAACGTGTCCGAGAGTTTTCCCTGCGTTGAGCACGCAGAGGGTGCT
GACGATGGAGAGGCTGCGGGGGGTGAGTTTGATTGATTTGGAGGGGATCA
AGGCGTACACGGATGATCCAGAGGGAACTCTGATCGCGGCTTTGAATACC
TGGAGTTTGTCCGTCGTGCTATGTCCGAGTTTCCATGCTGATGTGCACAG
TGGGAATTTATTGGTCCTGGAGGACGGACGTGTTGGCTTCATTGATTTTG
GGATTGTCGGACGGTTGTCGCCCGAGACCTGGCAGGCAGTGACGGAAGTG
GGAGAAGGGTTGGTGGGAGGGGACTACCGAGTCATGGCTCAGGGCTTGAT
TCGGATGGGAGCGACGGCGGCGGCGGTGGATGAAGGGAAGCTCGCGGGGG
ATCTGCAGGCGTTGTTTGAACGGTTGAGGACGTTGGACCCACAGATGGTG
GTGATTGCGGATGTAGAGAGCCAGACGGCGGCGGCGTCTCTGCAAGTCGA
TGAAGAGCAAGTCACGAGATTGTTATTGGAGATTGTGGAAGTGGCTAGTA
GTAACGGCTTGAAACTGCCTAGGCAGTTTGGATTGTTGATAAAGCAAAGT
CTTTACTTTGACCGGTATACGCGGATATTGGCTCCTACGTTAGATCCGTT
GAGAGATTCAAGAGTGAATTTTCCACGAACGGTGGAGGAGGCGGAGAAAG
TATCGTCTGGGGGTAGAGGAAGGATGGGGGCACGAAGGAGGGAGAGGGAG
GAAGACTTGGGCGTCGTCATAGATGTGACGCCTAAAAAGTAGGGAGGACG
GGAGGGAAGAAAAGTGTGAGGGTGCCCAAAAATGTAGAGTTATTGATAGA
GAAATGGAATGAAAAATAAAAAGGGGCTTTAGAGTGATTTCAAGAAGACA
AGATACTTTGAACTGTGTCATTTCCTCCCTTGCTTTTGTGTCGGGTCTTA
TCATTTTACATCCAACCCTCTGCCAGTTTCCTCCGCGTATCGCTCGCTTC
CGGGTCGTAATACATGGCCAATACCTGCCAGAGCTGCGCATGCAGCGCGA
CCGCAGTCCTCTTACAGCTGCTCCAAGCGTCATTTTTATCGTTGTTGTTG
TTGTTGTCGTTGCTGCTGCTGCTGCTGCTGCTGCATCTCTTGCTCATGAA
TGCTTCCTCCTTTTCCGGTTCACTCTTCCACTGAACAAACACCAGACCAT
TCGTTACATCTCTCACGTGGGCCGTTTTCAAGGCCTCCTTGTACCTATGC
ACCGCTGCATCCTGTGCTAGAGCTGTGGCAGTATCCTCCAGTCGATAATT
ATGGATAAGAGCGGAGTACTCAGCCAGCGACCACTTTAATCCGTGAAAAG
CCTTGATGTATAATCTCTGTTGTTTCTGCTGCTGCTGCTGCTCCTGTTGT
TGTTGTTGTTGTTGTTGT back to topCoding sequence (CDS) from alignment at chr4:435864..438581+ >NO04G01390.1 ID=NO04G01390.1|Name=NO04G01390.1|organism=Nannochloropsis oceanica|type=CDS|length=1872bp|location=Sequence derived from alignment at chr4:435864..438581+ (Nannochloropsis oceanica) ATGCGCGTGCCAACTGAGCTGCAGCAGTCTTCCCAGCTTCCTGCCTCCGC GCCCACATCAACGCGTAGCACCAGCACTGCTCGACGAGCCAGAACAAAAA ACGCAGCATCGCCCGGCGGCTTAGTCACCCTATTGTCGATCCTGGTCATG CTGGCTAGTCCCTTGCGCTGGGGTGCGCATGGTATTGCTTCTGCCTTTCT GATGCGGCCGCTTCAGGGCTCCCGCGCCTGTCAAATTCGCAGCAGCCGAC TGGCAATGAGCACCCGCACCACAGACACCAAGCCCCCTTCTGCTGCGTCC AACTCCGCCATTCCTAATGTAATCGGCGTCCTTCCCAGCTTTTCGCAGCT CTTGACCAGTGGGCGAGCCCTTTTACGAGATTCATTGCGCGTAGCCCAGG AAGTGGGGCCCAGAGCTGGACTTGCCCGGACATTGAGTGCTACCAAGGCC TTCAGCGAGACGGCACGCGATTTGCTCGTGGAGCTACGCAAGTACCAGCA ACAACAGCAGCAGGGTGAGGATACAGCAGTGTCGCCGTTTACGCGCGCGA CCTTGGCAAAGTCGATGCGTCAATTGTTCGAAAGGCTTGGGGCGACGTAC ATTAAGGTCGGGCAATTTATCGCCTCTAGTCCCACCCTCTTTCCCGAAGA ATTCGTGCTGGAATTTCAAAAATGCCTTGACCAAAGCGCTCCCGTCCCAT ACAGCGTCGTGCGCGAGACCCTCAGGGCAGAGCTAGGAGGGGATAAGGCG TTAAACGAGAAATTTGAATTCATCGACCCAATCCCTTTGGCCAGCGCGTC CATCGCTCAAGTCCACGTGGCCCGCCTCCGAGGAACTGGGGAGGAGGTTG TCTTAAAGGTACTTAAACCGGGCGTGACTGAGACGTTGAAAGCAGATCTG GGGTTTATATACCTCGTCTCTCGCTTGCTCGAAACGCTGGCGCCCGACCT GGCACGCACGTCGCTTGGGGATATTGTCGCTGATATTCGAACGTCCATTT TGGAGGAGGTGGATTTCAGAAAGGAACTTACAAATTTGGAAGAATTTCGC GCGTTTTTGGCGAAGTCAGAATTGACGGCGGTCGCAACGTGTCCGAGAGT TTTCCCTGCGTTGAGCACGCAGAGGGTGCTGACGATGGAGAGGCTGCGGG GGGTGAGTTTGATTGATTTGGAGGGGATCAAGGCGTACACGGATGATCCA GAGGGAACTCTGATCGCGGCTTTGAATACCTGGAGTTTGTCCGTCGTGCT ATGTCCGAGTTTCCATGCTGATGTGCACAGTGGGAATTTATTGGTCCTGG AGGACGGACGTGTTGGCTTCATTGATTTTGGGATTGTCGGACGGTTGTCG CCCGAGACCTGGCAGGCAGTGACGGAAGTGGGAGAAGGGTTGGTGGGAGG GGACTACCGAGTCATGGCTCAGGGCTTGATTCGGATGGGAGCGACGGCGG CGGCGGTGGATGAAGGGAAGCTCGCGGGGGATCTGCAGGCGTTGTTTGAA CGGTTGAGGACGTTGGACCCACAGATGGTGGTGATTGCGGATGTAGAGAG CCAGACGGCGGCGGCGTCTCTGCAAGTCGATGAAGAGCAAGTCACGAGAT TGTTATTGGAGATTGTGGAAGTGGCTAGTAGTAACGGCTTGAAACTGCCT AGGCAGTTTGGATTGTTGATAAAGCAAAGTCTTTACTTTGACCGGTATAC GCGGATATTGGCTCCTACGTTAGATCCGTTGAGAGATTCAAGAGTGAATT TTCCACGAACGGTGGAGGAGGCGGAGAAAGTATCGTCTGGGGGTAGAGGA AGGATGGGGGCACGAAGGAGGGAGAGGGAGGAAGACTTGGGCGTCGTCAT AGATGTGACGCCTAAAAAGTAG back to top
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