NO04G01360.1, NO04G01360.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO04G01360.1
Unique NameNO04G01360.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1248
Alignment locationchr4:423351..424774 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:423351..424774 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO04G01360.1 vs.
Match: EWM28540.1 (gualynate kinase-1 [Nannochloropsis gaditana])

HSP 1 Score: 439.9 bits (1130), Expect = 8.900e-120
Identity = 234/352 (66.48%), Postives = 267/352 (75.85%), Query Frame = 0
Query:    1 MASTASSLEDGISSSPGTGYLRESSLESQLETLSLLPHKTEEDGEERIHGASGSGSNTPPLTSTVSTASSSSTRCSSGSGIILGNSGQSKKSVLDMLHNNVVSMDNGKAANAHYINTHPEVRAALQDFLSAVLLEKPEDVYAFARIHFSQRGKVPKDKLLRPLVICGPSGVGKGTLMNMLFEEFGGYFGFSVSHTTRAPRPGEVHGVHYNFTSKKVMAEAIDEGRFLEFAEVHTNLYGTSLEAVRKVQRAGKVCVLDIDVQGVMKIKQTDVNPHLLFVAPPSVEQLEARLRGRATESAEAIETRLSAARAEIEYGTAEGHFEHVVVNDELENAYAELKATLIGYYPHLATTT 353
            MAS+ + +ED +  SP  G    +SLE QLE+ SLLPHKTEE+ EE               T+T   +   S R  +     +G SGQSKK ++DML+NN             YI+ HPE R  LQ F SAVL E+PEDVYAFAR +FSQR KVPK++LLRPLVICGPSGVGKGTLMNMLFEEFGGYFGFSVSHTTRAPRPGEV GVHYNFTS+  M  AI+EGRFLEFA VHTNLYGTSLEAVR+VQRAGKVCVLDIDVQGV+K+K+TDVNPH +F+APPSVE LEARLRGR TESA+ IETRL AARAEIEYG A+G+FEHVVVND LE AYA+LK TL+G+Y HLA  T
Sbjct:    1 MASSTALMEDRMERSPNPGSPPGNSLEGQLESFSLLPHKTEEENEETAQ------------TATPGVSDILSVRGETSENTPMGTSGQSKKGIVDMLYNN---RPKELETRPRYIDAHPEARLVLQAFFSAVLAEEPEDVYAFARQYFSQRVKVPKEELLRPLVICGPSGVGKGTLMNMLFEEFGGYFGFSVSHTTRAPRPGEVEGVHYNFTSRDAMEAAIEEGRFLEFARVHTNLYGTSLEAVRQVQRAGKVCVLDIDVQGVIKVKETDVNPHYVFIAPPSVEHLEARLRGRGTESAKDIETRLGAARAEIEYGLAKGNFEHVVVNDTLEKAYADLKTTLVGFYSHLAAKT 337          
The following BLAST results are available for this feature:
BLAST of NO04G01360.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28540.18.900e-12066.48gualynate kinase-1 [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO04G01360NO04G01360Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO04G01360.1NO04G01360.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO04G01360.1.cds1NO04G01360.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G01360.1.cds2NO04G01360.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO04G01360.1 ID=NO04G01360.1|Name=NO04G01360.1|organism=Nannochloropsis oceanica|type=mRNA|length=1248bp
ATGGCGTCCACCGCTTCCTCTTTAGAGGACGGGATAAGCAGCAGCCCCGG
CACGGGTTATCTTCGTGAAAGCAGCTTGGAGTCTCAGCTGGAAACCCTGA
GCTTGTTGCCTCACAAGACGGAGGAGGATGGCGAGGAGCGCATCCATGGT
GCTAGCGGCAGCGGGAGCAACACCCCACCGCTCACCAGCACTGTCTCCAC
CGCCAGCAGCTCAAGTACCAGGTGCAGCAGTGGCAGCGGCATCATCTTGG
GCAATAGTGGTCAGTCGAAGAAAAGCGTGTTGGACATGCTGCACAACAAC
GTCGTGAGCATGGACAATGGCAAAGCTGCGAATGCCCACTACATCAACAC
CCACCCAGAAGTTCGCGCTGCCTTGCAAGATTTCTTGAGTGCCGTCTTGC
TTGAAAAGCCTGAAGATGTGTATGCGTTCGCTCGCATTCATTTCAGCCAA
CGTGGTAAAGTTCCCAAGGACAAGCTTTTGCGGCCCTTGGTCATCTGTGG
GCCGTCTGGGGTGGGGAAGGGGACGTTAATGAACATGCTTTTTGAGGAGT
TTGGAGGGTATTTTGGCTTCTCTGTCTCGCACACTACTCGGGCCCCGCGT
CCTGGGGAGGTGCATGGCGTACATTATAATTTTACTTCGAAAAAGGTGAT
GGCGGAGGCGATAGACGAAGGACGGTTCCTGGAGTTTGCTGAGGTCCACA
CTAATTTGTACGGGACAAGTTTGGAGGCTGTGCGGAAAGTACAACGCGCG
GGGAAGGTATGCGTGTTGGATATTGACGTGCAGGGGGTGATGAAAATCAA
GCAGACGGACGTCAACCCCCATCTACTCTTCGTAGCCCCCCCGTCGGTGG
AGCAGCTGGAGGCCAGGTTGAGGGGGCGCGCGACGGAGTCGGCCGAGGCC
ATCGAGACGAGGCTCTCGGCGGCACGGGCGGAAATCGAATATGGCACGGC
AGAAGGGCACTTTGAGCACGTGGTGGTGAATGATGAGTTGGAAAACGCGT
ACGCGGAGTTGAAGGCGACGTTGATTGGGTATTACCCGCATCTGGCGACC
ACAACGTGTTGTTATGGTCCGACGCAATTGACAGGACAGAGAGAGGGCAA
AAAAAGAGCGCGGGACCTTAAAATTAGACACAGAATGAATAAGACCTTCA
CCGTCGGCAACAGCAACAACAGCAGCAACAACAGCAGCAGCAGAATCATC
AAATTTTCAGGTAAAATTTTCACGGCTCCACCCACCCCCACAAAGTAG
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protein sequence of NO04G01360.1

>NO04G01360.1-protein ID=NO04G01360.1-protein|Name=NO04G01360.1|organism=Nannochloropsis oceanica|type=polypeptide|length=416bp
MASTASSLEDGISSSPGTGYLRESSLESQLETLSLLPHKTEEDGEERIHG
ASGSGSNTPPLTSTVSTASSSSTRCSSGSGIILGNSGQSKKSVLDMLHNN
VVSMDNGKAANAHYINTHPEVRAALQDFLSAVLLEKPEDVYAFARIHFSQ
RGKVPKDKLLRPLVICGPSGVGKGTLMNMLFEEFGGYFGFSVSHTTRAPR
PGEVHGVHYNFTSKKVMAEAIDEGRFLEFAEVHTNLYGTSLEAVRKVQRA
GKVCVLDIDVQGVMKIKQTDVNPHLLFVAPPSVEQLEARLRGRATESAEA
IETRLSAARAEIEYGTAEGHFEHVVVNDELENAYAELKATLIGYYPHLAT
TTCCYGPTQLTGQREGKKRARDLKIRHRMNKTFTVGNSNNSSNNSSSRII
KFSGKIFTAPPTPTK*
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mRNA from alignment at chr4:423351..424774-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO04G01360.1 ID=NO04G01360.1|Name=NO04G01360.1|organism=Nannochloropsis oceanica|type=mRNA|length=1424bp|location=Sequence derived from alignment at chr4:423351..424774- (Nannochloropsis oceanica)
ATGGCGTCCACCGCTTCCTCTTTAGAGGACGGGATAAGCAGCAGCCCCGG CACGGGTTATCTTCGTGAAAGCAGCTTGGAGTCTCAGCTGGAAACCCTGA GCTTGTTGCCTCACAAGACGGAGGAGGATGGCGAGGAGCGCATCCATGGT GCTAGCGGCAGCGGGAGCAACACCCCACCGCTCACCAGCACTGTCTCCAC CGCCAGCAGCTCAAGTACCAGGTGCAGCAGTGGCAGCGGCATCATCTTGG GCAATAGTGGTCAGTCGAAGAAAAGCGTGTTGGACATGCTGCACAACAAC GTCGTGAGCATGGACAATGGCAAAGCTGCGAATGCCCACTACATCAACAC CCACCCAGAAGTTCGCGCTGCCTTGCAAGATTTCTTGAGTGCCGTCTTGC TTGAAAAGCCTGAAGATGTGTATGCGTTCGCTCGCATTCATTTCAGCCAA CGTGGTAAAGTTCCCAAGGACAAGCTTTTGCGGCCCTTGGTCATCTGTGG GCCGTCTGGGGTGGGGAAGGGGACGTTAATGAACATGCTTTTTGAGGAGT TTGGAGGGTATTTTGGCTTCTCTGTCTCGCACACTACTCGGGCCCCGCGT CCTGGGGAGGTGCATGGCGTACATTATAATTTTACTTCGAAAAAGGTGAT GGCGGAGGCGATAGACGAAGGACGGTTCCTGGAGTTTGCTGAGGTCCACA CTAATTTGTACGGGACAAGTTTGGAGGCTGTGCGGAAAGTACAACGCGCG GGGAAGGTATGCGTGTTGGATATTGACGTGCAGGGGGTGATGAAAATCAA GCAGACGGACGTCAACCCCCATCTACTCTTCGTAGCCCCCCCGTCGGTGG AGCAGCTGGAGGCCAGGTTGAGGGGGCGCGCGACGGAGTCGGCCGAGGCC ATCGAGACGAGGCTCTCGGCGGCACGGGCGGAAATCGAATATGGCACGGC AGAAGGGCACTTTGAGCACGTGGTGGTGAATGATGAGTTGGAAAACGCGT ACGCGGAGTTGAAGGCGACGTTGATTGGGTATTACCCGCATCTGGCGACC ACAACGGTCTGAGGAGGAAGAGGGAGAGAGGGAGAGAAGAAAGAGGTAGA GAGGTAGAGAGACAGAGAATAGCGACAGGAAACAGACAGAAGATAAGAAG ATAAACTATTTAGATCCTGATTGAACGACGAGTGGTAAGAGAGGATACAC AGACACCCACACGCCCACACACACACACACAGTGTTGTTATGGTCCGACG CAATTGACAGGACAGAGAGAGGGCAAAAAAAGAGCGCGGGACCTTAAAAT TAGACACAGAATGAATAAGACCTTCACCGTCGGCAACAGCAACAACAGCA GCAACAACAGCAGCAGCAGAATCATCAAATTTTCAGGTAAAATTTTCACG GCTCCACCCACCCCCACAAAGTAG
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Coding sequence (CDS) from alignment at chr4:423351..424774-

>NO04G01360.1 ID=NO04G01360.1|Name=NO04G01360.1|organism=Nannochloropsis oceanica|type=CDS|length=1248bp|location=Sequence derived from alignment at chr4:423351..424774- (Nannochloropsis oceanica)
ATGGCGTCCACCGCTTCCTCTTTAGAGGACGGGATAAGCAGCAGCCCCGG
CACGGGTTATCTTCGTGAAAGCAGCTTGGAGTCTCAGCTGGAAACCCTGA
GCTTGTTGCCTCACAAGACGGAGGAGGATGGCGAGGAGCGCATCCATGGT
GCTAGCGGCAGCGGGAGCAACACCCCACCGCTCACCAGCACTGTCTCCAC
CGCCAGCAGCTCAAGTACCAGGTGCAGCAGTGGCAGCGGCATCATCTTGG
GCAATAGTGGTCAGTCGAAGAAAAGCGTGTTGGACATGCTGCACAACAAC
GTCGTGAGCATGGACAATGGCAAAGCTGCGAATGCCCACTACATCAACAC
CCACCCAGAAGTTCGCGCTGCCTTGCAAGATTTCTTGAGTGCCGTCTTGC
TTGAAAAGCCTGAAGATGTGTATGCGTTCGCTCGCATTCATTTCAGCCAA
CGTGGTAAAGTTCCCAAGGACAAGCTTTTGCGGCCCTTGGTCATCTGTGG
GCCGTCTGGGGTGGGGAAGGGGACGTTAATGAACATGCTTTTTGAGGAGT
TTGGAGGGTATTTTGGCTTCTCTGTCTCGCACACTACTCGGGCCCCGCGT
CCTGGGGAGGTGCATGGCGTACATTATAATTTTACTTCGAAAAAGGTGAT
GGCGGAGGCGATAGACGAAGGACGGTTCCTGGAGTTTGCTGAGGTCCACA
CTAATTTGTACGGGACAAGTTTGGAGGCTGTGCGGAAAGTACAACGCGCG
GGGAAGGTATGCGTGTTGGATATTGACGTGCAGGGGGTGATGAAAATCAA
GCAGACGGACGTCAACCCCCATCTACTCTTCGTAGCCCCCCCGTCGGTGG
AGCAGCTGGAGGCCAGGTTGAGGGGGCGCGCGACGGAGTCGGCCGAGGCC
ATCGAGACGAGGCTCTCGGCGGCACGGGCGGAAATCGAATATGGCACGGC
AGAAGGGCACTTTGAGCACGTGGTGGTGAATGATGAGTTGGAAAACGCGT
ACGCGGAGTTGAAGGCGACGTTGATTGGGTATTACCCGCATCTGGCGACC
ACAACGTGTTGTTATGGTCCGACGCAATTGACAGGACAGAGAGAGGGCAA
AAAAAGAGCGCGGGACCTTAAAATTAGACACAGAATGAATAAGACCTTCA
CCGTCGGCAACAGCAACAACAGCAGCAACAACAGCAGCAGCAGAATCATC
AAATTTTCAGGTAAAATTTTCACGGCTCCACCCACCCCCACAAAGTAG
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Synonyms
Publications