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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr4 | genome | chr4:423351..424774 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO04G01360.1 vs.
Match: EWM28540.1 (gualynate kinase-1 [Nannochloropsis gaditana]) HSP 1 Score: 439.9 bits (1130), Expect = 8.900e-120 Identity = 234/352 (66.48%), Postives = 267/352 (75.85%), Query Frame = 0
Query: 1 MASTASSLEDGISSSPGTGYLRESSLESQLETLSLLPHKTEEDGEERIHGASGSGSNTPPLTSTVSTASSSSTRCSSGSGIILGNSGQSKKSVLDMLHNNVVSMDNGKAANAHYINTHPEVRAALQDFLSAVLLEKPEDVYAFARIHFSQRGKVPKDKLLRPLVICGPSGVGKGTLMNMLFEEFGGYFGFSVSHTTRAPRPGEVHGVHYNFTSKKVMAEAIDEGRFLEFAEVHTNLYGTSLEAVRKVQRAGKVCVLDIDVQGVMKIKQTDVNPHLLFVAPPSVEQLEARLRGRATESAEAIETRLSAARAEIEYGTAEGHFEHVVVNDELENAYAELKATLIGYYPHLATTT 353
MAS+ + +ED + SP G +SLE QLE+ SLLPHKTEE+ EE T+T + S R + +G SGQSKK ++DML+NN YI+ HPE R LQ F SAVL E+PEDVYAFAR +FSQR KVPK++LLRPLVICGPSGVGKGTLMNMLFEEFGGYFGFSVSHTTRAPRPGEV GVHYNFTS+ M AI+EGRFLEFA VHTNLYGTSLEAVR+VQRAGKVCVLDIDVQGV+K+K+TDVNPH +F+APPSVE LEARLRGR TESA+ IETRL AARAEIEYG A+G+FEHVVVND LE AYA+LK TL+G+Y HLA T
Sbjct: 1 MASSTALMEDRMERSPNPGSPPGNSLEGQLESFSLLPHKTEEENEETAQ------------TATPGVSDILSVRGETSENTPMGTSGQSKKGIVDMLYNN---RPKELETRPRYIDAHPEARLVLQAFFSAVLAEEPEDVYAFARQYFSQRVKVPKEELLRPLVICGPSGVGKGTLMNMLFEEFGGYFGFSVSHTTRAPRPGEVEGVHYNFTSRDAMEAAIEEGRFLEFARVHTNLYGTSLEAVRQVQRAGKVCVLDIDVQGVIKVKETDVNPHYVFIAPPSVEHLEARLRGRGTESAKDIETRLGAARAEIEYGLAKGNFEHVVVNDTLEKAYADLKTTLVGFYSHLAAKT 337
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO04G01360.1 ID=NO04G01360.1|Name=NO04G01360.1|organism=Nannochloropsis oceanica|type=mRNA|length=1248bp ATGGCGTCCACCGCTTCCTCTTTAGAGGACGGGATAAGCAGCAGCCCCGG CACGGGTTATCTTCGTGAAAGCAGCTTGGAGTCTCAGCTGGAAACCCTGA GCTTGTTGCCTCACAAGACGGAGGAGGATGGCGAGGAGCGCATCCATGGT GCTAGCGGCAGCGGGAGCAACACCCCACCGCTCACCAGCACTGTCTCCAC CGCCAGCAGCTCAAGTACCAGGTGCAGCAGTGGCAGCGGCATCATCTTGG GCAATAGTGGTCAGTCGAAGAAAAGCGTGTTGGACATGCTGCACAACAAC GTCGTGAGCATGGACAATGGCAAAGCTGCGAATGCCCACTACATCAACAC CCACCCAGAAGTTCGCGCTGCCTTGCAAGATTTCTTGAGTGCCGTCTTGC TTGAAAAGCCTGAAGATGTGTATGCGTTCGCTCGCATTCATTTCAGCCAA CGTGGTAAAGTTCCCAAGGACAAGCTTTTGCGGCCCTTGGTCATCTGTGG GCCGTCTGGGGTGGGGAAGGGGACGTTAATGAACATGCTTTTTGAGGAGT TTGGAGGGTATTTTGGCTTCTCTGTCTCGCACACTACTCGGGCCCCGCGT CCTGGGGAGGTGCATGGCGTACATTATAATTTTACTTCGAAAAAGGTGAT GGCGGAGGCGATAGACGAAGGACGGTTCCTGGAGTTTGCTGAGGTCCACA CTAATTTGTACGGGACAAGTTTGGAGGCTGTGCGGAAAGTACAACGCGCG GGGAAGGTATGCGTGTTGGATATTGACGTGCAGGGGGTGATGAAAATCAA GCAGACGGACGTCAACCCCCATCTACTCTTCGTAGCCCCCCCGTCGGTGG AGCAGCTGGAGGCCAGGTTGAGGGGGCGCGCGACGGAGTCGGCCGAGGCC ATCGAGACGAGGCTCTCGGCGGCACGGGCGGAAATCGAATATGGCACGGC AGAAGGGCACTTTGAGCACGTGGTGGTGAATGATGAGTTGGAAAACGCGT ACGCGGAGTTGAAGGCGACGTTGATTGGGTATTACCCGCATCTGGCGACC ACAACGTGTTGTTATGGTCCGACGCAATTGACAGGACAGAGAGAGGGCAA AAAAAGAGCGCGGGACCTTAAAATTAGACACAGAATGAATAAGACCTTCA CCGTCGGCAACAGCAACAACAGCAGCAACAACAGCAGCAGCAGAATCATC AAATTTTCAGGTAAAATTTTCACGGCTCCACCCACCCCCACAAAGTAG back to topprotein sequence of NO04G01360.1 >NO04G01360.1-protein ID=NO04G01360.1-protein|Name=NO04G01360.1|organism=Nannochloropsis oceanica|type=polypeptide|length=416bp MASTASSLEDGISSSPGTGYLRESSLESQLETLSLLPHKTEEDGEERIHG ASGSGSNTPPLTSTVSTASSSSTRCSSGSGIILGNSGQSKKSVLDMLHNN VVSMDNGKAANAHYINTHPEVRAALQDFLSAVLLEKPEDVYAFARIHFSQ RGKVPKDKLLRPLVICGPSGVGKGTLMNMLFEEFGGYFGFSVSHTTRAPR PGEVHGVHYNFTSKKVMAEAIDEGRFLEFAEVHTNLYGTSLEAVRKVQRA GKVCVLDIDVQGVMKIKQTDVNPHLLFVAPPSVEQLEARLRGRATESAEA IETRLSAARAEIEYGTAEGHFEHVVVNDELENAYAELKATLIGYYPHLAT TTCCYGPTQLTGQREGKKRARDLKIRHRMNKTFTVGNSNNSSNNSSSRII KFSGKIFTAPPTPTK* back to topmRNA from alignment at chr4:423351..424774- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO04G01360.1 ID=NO04G01360.1|Name=NO04G01360.1|organism=Nannochloropsis oceanica|type=mRNA|length=1424bp|location=Sequence derived from alignment at chr4:423351..424774- (Nannochloropsis oceanica) ATGGCGTCCACCGCTTCCTCTTTAGAGGACGGGATAAGCAGCAGCCCCGG
CACGGGTTATCTTCGTGAAAGCAGCTTGGAGTCTCAGCTGGAAACCCTGA
GCTTGTTGCCTCACAAGACGGAGGAGGATGGCGAGGAGCGCATCCATGGT
GCTAGCGGCAGCGGGAGCAACACCCCACCGCTCACCAGCACTGTCTCCAC
CGCCAGCAGCTCAAGTACCAGGTGCAGCAGTGGCAGCGGCATCATCTTGG
GCAATAGTGGTCAGTCGAAGAAAAGCGTGTTGGACATGCTGCACAACAAC
GTCGTGAGCATGGACAATGGCAAAGCTGCGAATGCCCACTACATCAACAC
CCACCCAGAAGTTCGCGCTGCCTTGCAAGATTTCTTGAGTGCCGTCTTGC
TTGAAAAGCCTGAAGATGTGTATGCGTTCGCTCGCATTCATTTCAGCCAA
CGTGGTAAAGTTCCCAAGGACAAGCTTTTGCGGCCCTTGGTCATCTGTGG
GCCGTCTGGGGTGGGGAAGGGGACGTTAATGAACATGCTTTTTGAGGAGT
TTGGAGGGTATTTTGGCTTCTCTGTCTCGCACACTACTCGGGCCCCGCGT
CCTGGGGAGGTGCATGGCGTACATTATAATTTTACTTCGAAAAAGGTGAT
GGCGGAGGCGATAGACGAAGGACGGTTCCTGGAGTTTGCTGAGGTCCACA
CTAATTTGTACGGGACAAGTTTGGAGGCTGTGCGGAAAGTACAACGCGCG
GGGAAGGTATGCGTGTTGGATATTGACGTGCAGGGGGTGATGAAAATCAA
GCAGACGGACGTCAACCCCCATCTACTCTTCGTAGCCCCCCCGTCGGTGG
AGCAGCTGGAGGCCAGGTTGAGGGGGCGCGCGACGGAGTCGGCCGAGGCC
ATCGAGACGAGGCTCTCGGCGGCACGGGCGGAAATCGAATATGGCACGGC
AGAAGGGCACTTTGAGCACGTGGTGGTGAATGATGAGTTGGAAAACGCGT
ACGCGGAGTTGAAGGCGACGTTGATTGGGTATTACCCGCATCTGGCGACC
ACAACGGTCTGAGGAGGAAGAGGGAGAGAGGGAGAGAAGAAAGAGGTAGA
GAGGTAGAGAGACAGAGAATAGCGACAGGAAACAGACAGAAGATAAGAAG
ATAAACTATTTAGATCCTGATTGAACGACGAGTGGTAAGAGAGGATACAC
AGACACCCACACGCCCACACACACACACACAGTGTTGTTATGGTCCGACG
CAATTGACAGGACAGAGAGAGGGCAAAAAAAGAGCGCGGGACCTTAAAAT
TAGACACAGAATGAATAAGACCTTCACCGTCGGCAACAGCAACAACAGCA
GCAACAACAGCAGCAGCAGAATCATCAAATTTTCAGGTAAAATTTTCACG
GCTCCACCCACCCCCACAAAGTAG back to topCoding sequence (CDS) from alignment at chr4:423351..424774- >NO04G01360.1 ID=NO04G01360.1|Name=NO04G01360.1|organism=Nannochloropsis oceanica|type=CDS|length=1248bp|location=Sequence derived from alignment at chr4:423351..424774- (Nannochloropsis oceanica) ATGGCGTCCACCGCTTCCTCTTTAGAGGACGGGATAAGCAGCAGCCCCGG CACGGGTTATCTTCGTGAAAGCAGCTTGGAGTCTCAGCTGGAAACCCTGA GCTTGTTGCCTCACAAGACGGAGGAGGATGGCGAGGAGCGCATCCATGGT GCTAGCGGCAGCGGGAGCAACACCCCACCGCTCACCAGCACTGTCTCCAC CGCCAGCAGCTCAAGTACCAGGTGCAGCAGTGGCAGCGGCATCATCTTGG GCAATAGTGGTCAGTCGAAGAAAAGCGTGTTGGACATGCTGCACAACAAC GTCGTGAGCATGGACAATGGCAAAGCTGCGAATGCCCACTACATCAACAC CCACCCAGAAGTTCGCGCTGCCTTGCAAGATTTCTTGAGTGCCGTCTTGC TTGAAAAGCCTGAAGATGTGTATGCGTTCGCTCGCATTCATTTCAGCCAA CGTGGTAAAGTTCCCAAGGACAAGCTTTTGCGGCCCTTGGTCATCTGTGG GCCGTCTGGGGTGGGGAAGGGGACGTTAATGAACATGCTTTTTGAGGAGT TTGGAGGGTATTTTGGCTTCTCTGTCTCGCACACTACTCGGGCCCCGCGT CCTGGGGAGGTGCATGGCGTACATTATAATTTTACTTCGAAAAAGGTGAT GGCGGAGGCGATAGACGAAGGACGGTTCCTGGAGTTTGCTGAGGTCCACA CTAATTTGTACGGGACAAGTTTGGAGGCTGTGCGGAAAGTACAACGCGCG GGGAAGGTATGCGTGTTGGATATTGACGTGCAGGGGGTGATGAAAATCAA GCAGACGGACGTCAACCCCCATCTACTCTTCGTAGCCCCCCCGTCGGTGG AGCAGCTGGAGGCCAGGTTGAGGGGGCGCGCGACGGAGTCGGCCGAGGCC ATCGAGACGAGGCTCTCGGCGGCACGGGCGGAAATCGAATATGGCACGGC AGAAGGGCACTTTGAGCACGTGGTGGTGAATGATGAGTTGGAAAACGCGT ACGCGGAGTTGAAGGCGACGTTGATTGGGTATTACCCGCATCTGGCGACC ACAACGTGTTGTTATGGTCCGACGCAATTGACAGGACAGAGAGAGGGCAA AAAAAGAGCGCGGGACCTTAAAATTAGACACAGAATGAATAAGACCTTCA CCGTCGGCAACAGCAACAACAGCAGCAACAACAGCAGCAGCAGAATCATC AAATTTTCAGGTAAAATTTTCACGGCTCCACCCACCCCCACAAAGTAG back to top
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