NO04G01350.1, NO04G01350.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO04G01350.1
Unique NameNO04G01350.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1755
Alignment locationchr4:421356..423110 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:421356..423110 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO04G01350.1 vs.
Match: EWM28566.1 (hypothetical protein Naga_100009g16 [Nannochloropsis gaditana])

HSP 1 Score: 457.6 bits (1176), Expect = 5.800e-125
Identity = 236/347 (68.01%), Postives = 272/347 (78.39%), Query Frame = 0 
Query:  121 IDGGKTNVLFDHSAQFLSAPIS--PSPPSSPSATWDKWVREMEAQGILREWDSKSIGILERGGKFIPRASTTTPPQPRALVSPQGMRAIPTYLAQGLHIDRPKWVSKAKWIPQTDGTGGFWDLWHYQEQLDAFEYLVIAHNGKCAARLAKSAGEALAPVARLLETKFGASIRGGNTPRYMQLCSLFVLMVVLDEPVSLPGRERFEGAFVEGVSELSWVAEQGGKMGQDL--GGGTEGGRAAWVLVSSPGFAEQHKVPQENIPEDKAAEVTRLMLRAFRQALGMQEKGEEGAETSPLVPAASVLQLWGAGNPISVADMPQEAPFVFQAATGCGVCGDWLLAPSIPAAA 464
            +DGGKT VLFDHSAQFLSAP S   + PSSPS TW+KWV EME  GILREWDS+ IG L RGG F PRA+ +   QPRAL+   GMRAIP Y+A+ L IDRPKWVSKA+     DGT   W LWHYQE+LD F+YLV+AHNGKCAARL KSAG ALAPVARLLETKFGA++RGG+TPR+MQLCSL+VLMVVLD PV LP     EGAFVEGV  LSWVA+QG K+GQ++  G   EG R AWV+VSSP FAE+HKVPQENIP + AAEVT L+L+AFR ALG + +  + A       + S LQLWGAGNPISVAD+ +E PF+FQA+TGCGVCGDW+LAPSIPAAA
Sbjct:    4 VDGGKTQVLFDHSAQFLSAPSSYVSTSPSSPSDTWNKWVCEMECDGILREWDSQRIGTLSRGGVFSPRATDSGGVQPRALIGSGGMRAIPAYMARNLEIDRPKWVSKAR--QNKDGT---WRLWHYQEELDDFDYLVVAHNGKCAARLMKSAGPALAPVARLLETKFGANLRGGSTPRFMQLCSLYVLMVVLDGPVPLP-TPNLEGAFVEGVPALSWVADQGAKLGQNVEKGPENEGTRRAWVIVSSPTFAEEHKVPQENIPIETAAEVTSLLLQAFRLALGKEGREYDAA----FKVSTSALQLWGAGNPISVADVSEEVPFIFQASTGCGVCGDWMLAPSIPAAA 340
The following BLAST results are available for this feature:
BLAST of NO04G01350.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28566.15.800e-12568.01hypothetical protein Naga_100009g16 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO04G01350NO04G01350Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO04G01350.1NO04G01350.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO04G01350.1.cds1NO04G01350.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO04G01350.1 ID=NO04G01350.1|Name=NO04G01350.1|organism=Nannochloropsis oceanica|type=mRNA|length=1755bp
ATGCGGACACCATATCTTTCCTTTCTCTTGGTCGCAGTCCTCTTCGCCGC
CACCACAGTCACCATCACTGCCCGCACCACAGCCGCCTTCACCACTTCCC
GCATCATGCCTCGCACCGGCACAGGAGGTGCGGCGGGTAAAGCCCTGAAT
GCTTGCCTGCAACTGAAACAAAAGCATTCCCGCACTCCCACCGTCGGCAT
GTCTGCCGCGGCCAGTCCGAATGGTCGCGTGGCCGTCATCGGCGCGGGCA
TCTCTGGCCTGGCGTGTTCCCGCGAGCTCAAGGCCCAAGGGATGGACGTG
CTGCTCTTTGACACGGGCCGCTTGGCTCCTGGAGGGCGTTGCTCGAGCAA
GACGGTGGTGATAGATGGCGGGAAGACCAACGTGTTGTTTGATCATTCAG
CGCAGTTCCTGTCCGCTCCTATTTCCCCCTCCCCACCCTCCTCCCCCTCT
GCCACTTGGGACAAATGGGTGCGAGAAATGGAAGCCCAAGGAATCCTCCG
TGAATGGGATAGCAAAAGCATAGGTATCCTTGAAAGAGGTGGAAAATTCA
TCCCACGTGCCTCCACCACCACCCCGCCGCAGCCCCGTGCGCTTGTAAGC
CCTCAAGGCATGCGCGCTATCCCGACTTACTTAGCTCAGGGCTTGCACAT
TGACCGCCCCAAATGGGTGTCAAAAGCGAAATGGATCCCCCAAACCGACG
GCACCGGTGGCTTTTGGGATCTATGGCATTACCAAGAGCAACTTGACGCC
TTTGAATACCTAGTCATTGCGCACAACGGGAAGTGCGCTGCCCGTCTTGC
CAAATCAGCAGGGGAGGCCCTGGCACCAGTTGCTCGCTTACTCGAAACAA
AGTTTGGGGCGAGCATTCGTGGAGGAAACACACCGAGATATATGCAGTTA
TGTAGTCTGTTCGTGCTCATGGTGGTGTTGGACGAACCTGTCTCCTTGCC
TGGCAGAGAGCGGTTTGAGGGGGCTTTTGTGGAAGGAGTGTCAGAGTTGT
CTTGGGTGGCGGAGCAGGGAGGGAAGATGGGCCAGGATCTAGGAGGAGGG
ACGGAGGGAGGGAGGGCGGCATGGGTTTTGGTGTCATCGCCGGGATTCGC
GGAGCAGCATAAGGTGCCTCAGGAGAATATCCCTGAAGACAAAGCGGCGG
AGGTGACTAGGCTGATGCTTCGTGCATTTCGGCAAGCCTTGGGCATGCAG
GAGAAAGGCGAAGAGGGTGCAGAGACATCACCTCTAGTACCTGCAGCATC
AGTCCTCCAGTTATGGGGCGCGGGGAATCCGATTTCTGTCGCGGACATGC
CCCAAGAGGCGCCCTTTGTTTTTCAGGCGGCAACAGGGTGTGGGGTATGC
GGCGATTGGTTGCTTGCACCTTCCATTCCCGCAGCCGCCACCTCAGGAAT
CGCCCTGGCACGGCATATAGCCAGGCATCACGCGGCGAAAATAAATGGAG
ACAGGAAGGTGTTGGAGGAGGATGTGGGGTTGAGGTGTGGGTTCAAAGCG
GTGCAAGGAGCGAGGCCGATTGCCTCTTTTCCCGGTGATAAGGCACCGGT
GGTGGAGGCGGTTTCGCCAAAGCCTGGGCGAGGAGAAGGGGGAGGAGGAA
GAGGAGGTGGAGGTGGTGGGAGAGGAAGAGGAGGTGGAGGTGGTGGAGGG
GGAAGAGGAGGGGGAGGGAATCATAGTGGTGGTAGGGGGGGAGGAGGGGG
GAAACCGAAAAAACATCAGCAGCCGCAGCAGCCCAAAAAGAAGACAGACA
TGTAA
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protein sequence of NO04G01350.1

>NO04G01350.1-protein ID=NO04G01350.1-protein|Name=NO04G01350.1|organism=Nannochloropsis oceanica|type=polypeptide|length=585bp
MRTPYLSFLLVAVLFAATTVTITARTTAAFTTSRIMPRTGTGGAAGKALN
ACLQLKQKHSRTPTVGMSAAASPNGRVAVIGAGISGLACSRELKAQGMDV
LLFDTGRLAPGGRCSSKTVVIDGGKTNVLFDHSAQFLSAPISPSPPSSPS
ATWDKWVREMEAQGILREWDSKSIGILERGGKFIPRASTTTPPQPRALVS
PQGMRAIPTYLAQGLHIDRPKWVSKAKWIPQTDGTGGFWDLWHYQEQLDA
FEYLVIAHNGKCAARLAKSAGEALAPVARLLETKFGASIRGGNTPRYMQL
CSLFVLMVVLDEPVSLPGRERFEGAFVEGVSELSWVAEQGGKMGQDLGGG
TEGGRAAWVLVSSPGFAEQHKVPQENIPEDKAAEVTRLMLRAFRQALGMQ
EKGEEGAETSPLVPAASVLQLWGAGNPISVADMPQEAPFVFQAATGCGVC
GDWLLAPSIPAAATSGIALARHIARHHAAKINGDRKVLEEDVGLRCGFKA
VQGARPIASFPGDKAPVVEAVSPKPGRGEGGGGRGGGGGGRGRGGGGGGG
GRGGGGNHSGGRGGGGGKPKKHQQPQQPKKKTDM*
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mRNA from alignment at chr4:421356..423110+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO04G01350.1 ID=NO04G01350.1|Name=NO04G01350.1|organism=Nannochloropsis oceanica|type=mRNA|length=1755bp|location=Sequence derived from alignment at chr4:421356..423110+ (Nannochloropsis oceanica)
ATGCGGACACCATATCTTTCCTTTCTCTTGGTCGCAGTCCTCTTCGCCGC
CACCACAGTCACCATCACTGCCCGCACCACAGCCGCCTTCACCACTTCCC
GCATCATGCCTCGCACCGGCACAGGAGGTGCGGCGGGTAAAGCCCTGAAT
GCTTGCCTGCAACTGAAACAAAAGCATTCCCGCACTCCCACCGTCGGCAT
GTCTGCCGCGGCCAGTCCGAATGGTCGCGTGGCCGTCATCGGCGCGGGCA
TCTCTGGCCTGGCGTGTTCCCGCGAGCTCAAGGCCCAAGGGATGGACGTG
CTGCTCTTTGACACGGGCCGCTTGGCTCCTGGAGGGCGTTGCTCGAGCAA
GACGGTGGTGATAGATGGCGGGAAGACCAACGTGTTGTTTGATCATTCAG
CGCAGTTCCTGTCCGCTCCTATTTCCCCCTCCCCACCCTCCTCCCCCTCT
GCCACTTGGGACAAATGGGTGCGAGAAATGGAAGCCCAAGGAATCCTCCG
TGAATGGGATAGCAAAAGCATAGGTATCCTTGAAAGAGGTGGAAAATTCA
TCCCACGTGCCTCCACCACCACCCCGCCGCAGCCCCGTGCGCTTGTAAGC
CCTCAAGGCATGCGCGCTATCCCGACTTACTTAGCTCAGGGCTTGCACAT
TGACCGCCCCAAATGGGTGTCAAAAGCGAAATGGATCCCCCAAACCGACG
GCACCGGTGGCTTTTGGGATCTATGGCATTACCAAGAGCAACTTGACGCC
TTTGAATACCTAGTCATTGCGCACAACGGGAAGTGCGCTGCCCGTCTTGC
CAAATCAGCAGGGGAGGCCCTGGCACCAGTTGCTCGCTTACTCGAAACAA
AGTTTGGGGCGAGCATTCGTGGAGGAAACACACCGAGATATATGCAGTTA
TGTAGTCTGTTCGTGCTCATGGTGGTGTTGGACGAACCTGTCTCCTTGCC
TGGCAGAGAGCGGTTTGAGGGGGCTTTTGTGGAAGGAGTGTCAGAGTTGT
CTTGGGTGGCGGAGCAGGGAGGGAAGATGGGCCAGGATCTAGGAGGAGGG
ACGGAGGGAGGGAGGGCGGCATGGGTTTTGGTGTCATCGCCGGGATTCGC
GGAGCAGCATAAGGTGCCTCAGGAGAATATCCCTGAAGACAAAGCGGCGG
AGGTGACTAGGCTGATGCTTCGTGCATTTCGGCAAGCCTTGGGCATGCAG
GAGAAAGGCGAAGAGGGTGCAGAGACATCACCTCTAGTACCTGCAGCATC
AGTCCTCCAGTTATGGGGCGCGGGGAATCCGATTTCTGTCGCGGACATGC
CCCAAGAGGCGCCCTTTGTTTTTCAGGCGGCAACAGGGTGTGGGGTATGC
GGCGATTGGTTGCTTGCACCTTCCATTCCCGCAGCCGCCACCTCAGGAAT
CGCCCTGGCACGGCATATAGCCAGGCATCACGCGGCGAAAATAAATGGAG
ACAGGAAGGTGTTGGAGGAGGATGTGGGGTTGAGGTGTGGGTTCAAAGCG
GTGCAAGGAGCGAGGCCGATTGCCTCTTTTCCCGGTGATAAGGCACCGGT
GGTGGAGGCGGTTTCGCCAAAGCCTGGGCGAGGAGAAGGGGGAGGAGGAA
GAGGAGGTGGAGGTGGTGGGAGAGGAAGAGGAGGTGGAGGTGGTGGAGGG
GGAAGAGGAGGGGGAGGGAATCATAGTGGTGGTAGGGGGGGAGGAGGGGG
GAAACCGAAAAAACATCAGCAGCCGCAGCAGCCCAAAAAGAAGACAGACA
TGTAA
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Coding sequence (CDS) from alignment at chr4:421356..423110+

>NO04G01350.1 ID=NO04G01350.1|Name=NO04G01350.1|organism=Nannochloropsis oceanica|type=CDS|length=1755bp|location=Sequence derived from alignment at chr4:421356..423110+ (Nannochloropsis oceanica)
ATGCGGACACCATATCTTTCCTTTCTCTTGGTCGCAGTCCTCTTCGCCGC
CACCACAGTCACCATCACTGCCCGCACCACAGCCGCCTTCACCACTTCCC
GCATCATGCCTCGCACCGGCACAGGAGGTGCGGCGGGTAAAGCCCTGAAT
GCTTGCCTGCAACTGAAACAAAAGCATTCCCGCACTCCCACCGTCGGCAT
GTCTGCCGCGGCCAGTCCGAATGGTCGCGTGGCCGTCATCGGCGCGGGCA
TCTCTGGCCTGGCGTGTTCCCGCGAGCTCAAGGCCCAAGGGATGGACGTG
CTGCTCTTTGACACGGGCCGCTTGGCTCCTGGAGGGCGTTGCTCGAGCAA
GACGGTGGTGATAGATGGCGGGAAGACCAACGTGTTGTTTGATCATTCAG
CGCAGTTCCTGTCCGCTCCTATTTCCCCCTCCCCACCCTCCTCCCCCTCT
GCCACTTGGGACAAATGGGTGCGAGAAATGGAAGCCCAAGGAATCCTCCG
TGAATGGGATAGCAAAAGCATAGGTATCCTTGAAAGAGGTGGAAAATTCA
TCCCACGTGCCTCCACCACCACCCCGCCGCAGCCCCGTGCGCTTGTAAGC
CCTCAAGGCATGCGCGCTATCCCGACTTACTTAGCTCAGGGCTTGCACAT
TGACCGCCCCAAATGGGTGTCAAAAGCGAAATGGATCCCCCAAACCGACG
GCACCGGTGGCTTTTGGGATCTATGGCATTACCAAGAGCAACTTGACGCC
TTTGAATACCTAGTCATTGCGCACAACGGGAAGTGCGCTGCCCGTCTTGC
CAAATCAGCAGGGGAGGCCCTGGCACCAGTTGCTCGCTTACTCGAAACAA
AGTTTGGGGCGAGCATTCGTGGAGGAAACACACCGAGATATATGCAGTTA
TGTAGTCTGTTCGTGCTCATGGTGGTGTTGGACGAACCTGTCTCCTTGCC
TGGCAGAGAGCGGTTTGAGGGGGCTTTTGTGGAAGGAGTGTCAGAGTTGT
CTTGGGTGGCGGAGCAGGGAGGGAAGATGGGCCAGGATCTAGGAGGAGGG
ACGGAGGGAGGGAGGGCGGCATGGGTTTTGGTGTCATCGCCGGGATTCGC
GGAGCAGCATAAGGTGCCTCAGGAGAATATCCCTGAAGACAAAGCGGCGG
AGGTGACTAGGCTGATGCTTCGTGCATTTCGGCAAGCCTTGGGCATGCAG
GAGAAAGGCGAAGAGGGTGCAGAGACATCACCTCTAGTACCTGCAGCATC
AGTCCTCCAGTTATGGGGCGCGGGGAATCCGATTTCTGTCGCGGACATGC
CCCAAGAGGCGCCCTTTGTTTTTCAGGCGGCAACAGGGTGTGGGGTATGC
GGCGATTGGTTGCTTGCACCTTCCATTCCCGCAGCCGCCACCTCAGGAAT
CGCCCTGGCACGGCATATAGCCAGGCATCACGCGGCGAAAATAAATGGAG
ACAGGAAGGTGTTGGAGGAGGATGTGGGGTTGAGGTGTGGGTTCAAAGCG
GTGCAAGGAGCGAGGCCGATTGCCTCTTTTCCCGGTGATAAGGCACCGGT
GGTGGAGGCGGTTTCGCCAAAGCCTGGGCGAGGAGAAGGGGGAGGAGGAA
GAGGAGGTGGAGGTGGTGGGAGAGGAAGAGGAGGTGGAGGTGGTGGAGGG
GGAAGAGGAGGGGGAGGGAATCATAGTGGTGGTAGGGGGGGAGGAGGGGG
GAAACCGAAAAAACATCAGCAGCCGCAGCAGCCCAAAAAGAAGACAGACA
TGTAA
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Synonyms
Publications