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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr4 | genome | chr4:400157..402609 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO04G01290.1 vs.
Match: EWM28550.1 (Dor1-like protein [Nannochloropsis gaditana]) HSP 1 Score: 573.2 bits (1476), Expect = 1.100e-159 Identity = 372/691 (53.84%), Postives = 447/691 (64.69%), Query Frame = 0
Query: 11 LQKEPEKLRQEAARLQQTLEALYRSNYATIIENHECMSFIQERGQDFHTDLAALQAEVEELKGNCQVFAAGAQEMIGGLKRNRQTLQHHLQLVELLEVPQLMDACLRNGLFDEAVEIVAFANTLERRHLLITSSSATASAAATAASAAAGQDRDNQVSRSSFSFGKEHQQYQAKHTLVIAGLVQDLRALQKQLRERLLHQLRLPIQLPRCLQVISCLRKLDGLALEARLLKNKKKMRSMSTSTAPAVERSKRGTGGGGNGEVEYEELELRLQAEFLEARDAWLQSLLERISSNSSCSSGSGGVDGGDGGAGQLMAVIETNRTHWFEIATQFRAIFLDDELASSSSSSSSSSSSLPANSSFLRNGGGSGGGGGGSKALSAWLLGRITAFLGRLEEGLVRLNDGAALVDVMEQCLFFAVSMGRIGGDFRGLLVPVFERAIRVMAEGRWSRATLELEALLERCMKEGGIAMKQHQHQHQHQRQHQRLGSGMHSSYQMCYVLPGTVSSSKSSSSCQDQATTTPEGGSTLTTTTTAPPEPFAPPSSILSFPPLAQFTNLVLSSFNQLRQCLPWTMADELQSLFLLHLRGAATVLIAHQEQLQQQQQQQQQQQQQQQQQQQQQQLKQGGLLVLYKQMRKEAEKVVFPYLLRCFAAMVVGGEEKEEGGNEGGKAGRKEIMIKEQEAEIERLWTASLNE 702
L KEPE LRQEA R+QQTLEALYRS+Y TIIEN+ECM+FIQERG +F DL ALQ EV LK C F AGAQ ++G LKRNRQT QHHLQLVELLEVPQ+MDACLRNGL+DEAVE+VAFANTLERRHL S N SRS F G + KHT+VIAGLVQ+LR LQ+QLRERL++QLRLPIQLPRCLQ+ISCLRKLDGLAL+AR +K R +S S APA RG G + ++ELE LQ EFL+ARDAWLQS LE+ SG+ G G G LMA+IE NRTHWFEI TQFRAIFLDD L +S SSSS+ SSS +S LR G+ GGSK LSAWLL R+ FLG LE+ L + +GA L DVMEQCLFFA SMGRIGGDFR L PVF +AI MA+ WS + +ELEALLERC +EG + Q R H++ GSG H Y MCY PG+ ++ D T T+T+ + APPSSIL+FPPLAQFTNLVL S+NQLRQC PW++ D+LQ+L + LR A +L+ H+EQLQQ ++ ++ Q Q Y+ +R+EA VVFPY++RCF MV GG GG GK R+ I+E + E+ ++W+A E
Sbjct: 10 LHKEPELLRQEATRVQQTLEALYRSHYTTIIENYECMTFIQERGTEFQADLTALQEEVGGLKEACGPFTAGAQAIVGDLKRNRQTFQHHLQLVELLEVPQVMDACLRNGLYDEAVEVVAFANTLERRHL---------------RSLEQADPYSNSKSRSMFDEGG-----RGKHTVVIAGLVQELRVLQRQLRERLVYQLRLPIQLPRCLQIISCLRKLDGLALDARSQGPRK--RQLSLSAAPAT--VNRGRIGAAHDVSGHDELEKELQTEFLDARDAWLQSELEQ------GRSGASGARGHGVGVADLMAMIEANRTHWFEITTQFRAIFLDDGLEASGSSSSTHSSS----TSLLRGQDGA----GGSKVLSAWLLRRLALFLGELEDKLAHVTEGAVLADVMEQCLFFAASMGRIGGDFRASLGPVFSQAILAMADAHWSASRVELEALLERCAREGTMLRAQ-------PRPHRQSGSGSH-PYPMCYYAPGSTGPNQ-----HDGRDTAHHSAQPDPDTSTSESDFPAPPSSILAFPPLAQFTNLVLVSYNQLRQCTPWSLVDDLQALLVTRLREVAGLLVKHEEQLQQLIREHDEEAQAPLSAVTGQ----------YRDLRREARDVVFPYVIRCFGRMVTGG-----GGGGVGKMTREGRQIEELDTEMRKVWSAQSPE 634
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO04G01290.1 ID=NO04G01290.1|Name=NO04G01290.1|organism=Nannochloropsis oceanica|type=mRNA|length=2453bp ACAGGGAAGACAGCGGAAACCTCTTTGGAGAAGCAGAAGGATTCCCTGTT TCCCCCTCAGGCACTTCTTCCGCTCAGCGTCATCGAGCCCATTATTATCA TCACTAGTCTCTATCCCCGCTACACCCCTCTCCAGCCCCAGTCAGCACAT CCACACCACGACTCTCACCCAGCTCGCCATGTCGTCGTCAAGCACTTCCA CCTTGATTCTGCAAAAAGAACCTGAAAAGCTTCGACAAGAAGCGGCACGG CTGCAGCAAACGCTCGAGGCCCTTTACCGCAGCAACTACGCGACCATCAT TGAGAATCATGAATGCATGTCTTTCATCCAAGAACGTGGCCAAGATTTCC ACACCGACCTGGCCGCCTTGCAAGCCGAGGTGGAAGAGTTGAAAGGAAAC TGCCAGGTATTTGCAGCCGGAGCACAAGAGATGATTGGTGGGCTGAAAAG AAATCGGCAGACGTTGCAGCATCACTTACAGCTGGTGGAGTTGTTGGAAG TGCCTCAATTGATGGACGCTTGTCTACGGAATGGTCTGTTTGACGAGGCT GTGGAAATCGTCGCCTTTGCCAATACTTTGGAGCGACGGCATTTGTTGAT TACGTCCTCCTCAGCAACAGCATCGGCAGCAGCAACAGCAGCATCAGCAG CAGCAGGACAGGATAGAGACAATCAGGTCTCGCGTTCCTCTTTTTCCTTT GGAAAAGAGCACCAACAGTATCAGGCAAAGCACACACTGGTGATTGCCGG TCTCGTCCAAGACCTCCGTGCGCTCCAAAAGCAATTAAGGGAGAGGCTTC TGCACCAACTTCGACTTCCTATCCAGCTTCCTCGCTGCCTTCAAGTCATC TCCTGCTTACGAAAATTAGACGGGCTCGCCCTCGAAGCCCGTCTGCTGAA AAATAAAAAGAAGATGCGTTCCATGTCTACCTCTACAGCACCAGCAGTAG AGAGGAGTAAAAGGGGTACGGGAGGGGGAGGAAACGGCGAGGTAGAGTAC GAAGAGCTCGAACTACGACTGCAGGCTGAATTTCTGGAGGCAAGGGATGC ATGGCTGCAGTCGCTGCTGGAACGGATCAGCAGCAATAGCAGTTGCAGCA GTGGTAGTGGTGGGGTGGATGGGGGTGATGGAGGGGCGGGACAGCTGATG GCTGTCATTGAGACGAACCGGACGCATTGGTTTGAAATTGCGACTCAATT TCGTGCTATTTTTTTGGACGATGAATTGGCATCTTCCTCATCATCATCAT CATCATCATCATCATCTCTTCCTGCCAATTCCTCTTTCCTGCGTAACGGG GGAGGAAGCGGTGGTGGGGGAGGGGGAAGTAAGGCTTTGTCTGCTTGGCT GCTTGGCCGGATTACAGCCTTTTTGGGTCGGTTGGAGGAGGGATTGGTAC GATTGAATGATGGGGCTGCCTTGGTGGATGTCATGGAGCAATGTTTGTTT TTTGCGGTGAGCATGGGGAGGATTGGGGGTGACTTTAGGGGCTTGCTGGT GCCCGTGTTCGAGCGTGCGATTCGAGTGATGGCCGAGGGGCGGTGGAGCA GGGCGACGCTGGAGTTGGAGGCATTGTTGGAACGGTGTATGAAGGAGGGG GGGATAGCGATGAAGCAGCACCAGCACCAGCACCAGCACCAGCGCCAGCA CCAGCGGTTGGGGAGTGGGATGCACTCGTCTTACCAGATGTGTTATGTCC TGCCTGGCACCGTCAGCAGCAGCAAGAGCAGCAGCAGCTGTCAAGATCAG GCCACTACCACACCCGAGGGCGGCAGTACTCTGACTACGACCACCACTGC TCCTCCAGAGCCATTCGCTCCCCCTTCTTCCATCCTCTCCTTCCCCCCCC TCGCGCAATTCACGAATCTTGTCCTCTCTTCCTTCAACCAGTTGAGGCAG TGCTTGCCCTGGACCATGGCGGATGAACTCCAATCCCTTTTCCTCCTTCA CCTACGTGGGGCGGCAACGGTACTAATCGCTCACCAGGAGCAATTGCAGC AGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAA CAACAACAGCAGCTGAAGCAGGGGGGCTTGTTGGTGCTGTACAAGCAGAT GAGAAAAGAGGCAGAGAAGGTCGTCTTCCCGTACTTGTTGCGGTGTTTTG CGGCCATGGTGGTAGGAGGGGAGGAAAAGGAGGAAGGAGGGAATGAAGGA GGGAAGGCCGGGAGGAAGGAGATTATGATAAAGGAGCAGGAGGCGGAGAT AGAAAGGTTATGGACGGCATCGTTGAATGAGCAGCTGTCGACGGCAGAGT AAGGGCGAGAAAGAAAGTAGGAGGAATGGAAGGGATGGTGGGCCGTCAGC GCTTCTTTTGAATCAATTGTGCAGCACGCGAGGTTTTGTATGTAATCTTA TGTTCTGGTGTAAGGGATCCAAACAAGAAAAATCAAGTAATTGCACCTTG CCA back to topprotein sequence of NO04G01290.1 >NO04G01290.1-protein ID=NO04G01290.1-protein|Name=NO04G01290.1|organism=Nannochloropsis oceanica|type=polypeptide|length=708bp MSSSSTSTLILQKEPEKLRQEAARLQQTLEALYRSNYATIIENHECMSFI QERGQDFHTDLAALQAEVEELKGNCQVFAAGAQEMIGGLKRNRQTLQHHL QLVELLEVPQLMDACLRNGLFDEAVEIVAFANTLERRHLLITSSSATASA AATAASAAAGQDRDNQVSRSSFSFGKEHQQYQAKHTLVIAGLVQDLRALQ KQLRERLLHQLRLPIQLPRCLQVISCLRKLDGLALEARLLKNKKKMRSMS TSTAPAVERSKRGTGGGGNGEVEYEELELRLQAEFLEARDAWLQSLLERI SSNSSCSSGSGGVDGGDGGAGQLMAVIETNRTHWFEIATQFRAIFLDDEL ASSSSSSSSSSSSLPANSSFLRNGGGSGGGGGGSKALSAWLLGRITAFLG RLEEGLVRLNDGAALVDVMEQCLFFAVSMGRIGGDFRGLLVPVFERAIRV MAEGRWSRATLELEALLERCMKEGGIAMKQHQHQHQHQRQHQRLGSGMHS SYQMCYVLPGTVSSSKSSSSCQDQATTTPEGGSTLTTTTTAPPEPFAPPS SILSFPPLAQFTNLVLSSFNQLRQCLPWTMADELQSLFLLHLRGAATVLI AHQEQLQQQQQQQQQQQQQQQQQQQQQQLKQGGLLVLYKQMRKEAEKVVF PYLLRCFAAMVVGGEEKEEGGNEGGKAGRKEIMIKEQEAEIERLWTASLN EQLSTAE* back to topmRNA from alignment at chr4:400157..402609- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO04G01290.1 ID=NO04G01290.1|Name=NO04G01290.1|organism=Nannochloropsis oceanica|type=mRNA|length=2453bp|location=Sequence derived from alignment at chr4:400157..402609- (Nannochloropsis oceanica) ACAGGGAAGACAGCGGAAACCTCTTTGGAGAAGCAGAAGGATTCCCTGTT
TCCCCCTCAGGCACTTCTTCCGCTCAGCGTCATCGAGCCCATTATTATCA
TCACTAGTCTCTATCCCCGCTACACCCCTCTCCAGCCCCAGTCAGCACAT
CCACACCACGACTCTCACCCAGCTCGCCATGTCGTCGTCAAGCACTTCCA
CCTTGATTCTGCAAAAAGAACCTGAAAAGCTTCGACAAGAAGCGGCACGG
CTGCAGCAAACGCTCGAGGCCCTTTACCGCAGCAACTACGCGACCATCAT
TGAGAATCATGAATGCATGTCTTTCATCCAAGAACGTGGCCAAGATTTCC
ACACCGACCTGGCCGCCTTGCAAGCCGAGGTGGAAGAGTTGAAAGGAAAC
TGCCAGGTATTTGCAGCCGGAGCACAAGAGATGATTGGTGGGCTGAAAAG
AAATCGGCAGACGTTGCAGCATCACTTACAGCTGGTGGAGTTGTTGGAAG
TGCCTCAATTGATGGACGCTTGTCTACGGAATGGTCTGTTTGACGAGGCT
GTGGAAATCGTCGCCTTTGCCAATACTTTGGAGCGACGGCATTTGTTGAT
TACGTCCTCCTCAGCAACAGCATCGGCAGCAGCAACAGCAGCATCAGCAG
CAGCAGGACAGGATAGAGACAATCAGGTCTCGCGTTCCTCTTTTTCCTTT
GGAAAAGAGCACCAACAGTATCAGGCAAAGCACACACTGGTGATTGCCGG
TCTCGTCCAAGACCTCCGTGCGCTCCAAAAGCAATTAAGGGAGAGGCTTC
TGCACCAACTTCGACTTCCTATCCAGCTTCCTCGCTGCCTTCAAGTCATC
TCCTGCTTACGAAAATTAGACGGGCTCGCCCTCGAAGCCCGTCTGCTGAA
AAATAAAAAGAAGATGCGTTCCATGTCTACCTCTACAGCACCAGCAGTAG
AGAGGAGTAAAAGGGGTACGGGAGGGGGAGGAAACGGCGAGGTAGAGTAC
GAAGAGCTCGAACTACGACTGCAGGCTGAATTTCTGGAGGCAAGGGATGC
ATGGCTGCAGTCGCTGCTGGAACGGATCAGCAGCAATAGCAGTTGCAGCA
GTGGTAGTGGTGGGGTGGATGGGGGTGATGGAGGGGCGGGACAGCTGATG
GCTGTCATTGAGACGAACCGGACGCATTGGTTTGAAATTGCGACTCAATT
TCGTGCTATTTTTTTGGACGATGAATTGGCATCTTCCTCATCATCATCAT
CATCATCATCATCATCTCTTCCTGCCAATTCCTCTTTCCTGCGTAACGGG
GGAGGAAGCGGTGGTGGGGGAGGGGGAAGTAAGGCTTTGTCTGCTTGGCT
GCTTGGCCGGATTACAGCCTTTTTGGGTCGGTTGGAGGAGGGATTGGTAC
GATTGAATGATGGGGCTGCCTTGGTGGATGTCATGGAGCAATGTTTGTTT
TTTGCGGTGAGCATGGGGAGGATTGGGGGTGACTTTAGGGGCTTGCTGGT
GCCCGTGTTCGAGCGTGCGATTCGAGTGATGGCCGAGGGGCGGTGGAGCA
GGGCGACGCTGGAGTTGGAGGCATTGTTGGAACGGTGTATGAAGGAGGGG
GGGATAGCGATGAAGCAGCACCAGCACCAGCACCAGCACCAGCGCCAGCA
CCAGCGGTTGGGGAGTGGGATGCACTCGTCTTACCAGATGTGTTATGTCC
TGCCTGGCACCGTCAGCAGCAGCAAGAGCAGCAGCAGCTGTCAAGATCAG
GCCACTACCACACCCGAGGGCGGCAGTACTCTGACTACGACCACCACTGC
TCCTCCAGAGCCATTCGCTCCCCCTTCTTCCATCCTCTCCTTCCCCCCCC
TCGCGCAATTCACGAATCTTGTCCTCTCTTCCTTCAACCAGTTGAGGCAG
TGCTTGCCCTGGACCATGGCGGATGAACTCCAATCCCTTTTCCTCCTTCA
CCTACGTGGGGCGGCAACGGTACTAATCGCTCACCAGGAGCAATTGCAGC
AGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAA
CAACAACAGCAGCTGAAGCAGGGGGGCTTGTTGGTGCTGTACAAGCAGAT
GAGAAAAGAGGCAGAGAAGGTCGTCTTCCCGTACTTGTTGCGGTGTTTTG
CGGCCATGGTGGTAGGAGGGGAGGAAAAGGAGGAAGGAGGGAATGAAGGA
GGGAAGGCCGGGAGGAAGGAGATTATGATAAAGGAGCAGGAGGCGGAGAT
AGAAAGGTTATGGACGGCATCGTTGAATGAGCAGCTGTCGACGGCAGAGT
AAGGGCGAGAAAGAAAGTAGGAGGAATGGAAGGGATGGTGGGCCGTCAGC
GCTTCTTTTGAATCAATTGTGCAGCACGCGAGGTTTTGTATGTAATCTTA
TGTTCTGGTGTAAGGGATCCAAACAAGAAAAATCAAGTAATTGCACCTTG
CCA back to topCoding sequence (CDS) from alignment at chr4:400157..402609- >NO04G01290.1 ID=NO04G01290.1|Name=NO04G01290.1|organism=Nannochloropsis oceanica|type=CDS|length=2124bp|location=Sequence derived from alignment at chr4:400157..402609- (Nannochloropsis oceanica) ATGTCGTCGTCAAGCACTTCCACCTTGATTCTGCAAAAAGAACCTGAAAA GCTTCGACAAGAAGCGGCACGGCTGCAGCAAACGCTCGAGGCCCTTTACC GCAGCAACTACGCGACCATCATTGAGAATCATGAATGCATGTCTTTCATC CAAGAACGTGGCCAAGATTTCCACACCGACCTGGCCGCCTTGCAAGCCGA GGTGGAAGAGTTGAAAGGAAACTGCCAGGTATTTGCAGCCGGAGCACAAG AGATGATTGGTGGGCTGAAAAGAAATCGGCAGACGTTGCAGCATCACTTA CAGCTGGTGGAGTTGTTGGAAGTGCCTCAATTGATGGACGCTTGTCTACG GAATGGTCTGTTTGACGAGGCTGTGGAAATCGTCGCCTTTGCCAATACTT TGGAGCGACGGCATTTGTTGATTACGTCCTCCTCAGCAACAGCATCGGCA GCAGCAACAGCAGCATCAGCAGCAGCAGGACAGGATAGAGACAATCAGGT CTCGCGTTCCTCTTTTTCCTTTGGAAAAGAGCACCAACAGTATCAGGCAA AGCACACACTGGTGATTGCCGGTCTCGTCCAAGACCTCCGTGCGCTCCAA AAGCAATTAAGGGAGAGGCTTCTGCACCAACTTCGACTTCCTATCCAGCT TCCTCGCTGCCTTCAAGTCATCTCCTGCTTACGAAAATTAGACGGGCTCG CCCTCGAAGCCCGTCTGCTGAAAAATAAAAAGAAGATGCGTTCCATGTCT ACCTCTACAGCACCAGCAGTAGAGAGGAGTAAAAGGGGTACGGGAGGGGG AGGAAACGGCGAGGTAGAGTACGAAGAGCTCGAACTACGACTGCAGGCTG AATTTCTGGAGGCAAGGGATGCATGGCTGCAGTCGCTGCTGGAACGGATC AGCAGCAATAGCAGTTGCAGCAGTGGTAGTGGTGGGGTGGATGGGGGTGA TGGAGGGGCGGGACAGCTGATGGCTGTCATTGAGACGAACCGGACGCATT GGTTTGAAATTGCGACTCAATTTCGTGCTATTTTTTTGGACGATGAATTG GCATCTTCCTCATCATCATCATCATCATCATCATCATCTCTTCCTGCCAA TTCCTCTTTCCTGCGTAACGGGGGAGGAAGCGGTGGTGGGGGAGGGGGAA GTAAGGCTTTGTCTGCTTGGCTGCTTGGCCGGATTACAGCCTTTTTGGGT CGGTTGGAGGAGGGATTGGTACGATTGAATGATGGGGCTGCCTTGGTGGA TGTCATGGAGCAATGTTTGTTTTTTGCGGTGAGCATGGGGAGGATTGGGG GTGACTTTAGGGGCTTGCTGGTGCCCGTGTTCGAGCGTGCGATTCGAGTG ATGGCCGAGGGGCGGTGGAGCAGGGCGACGCTGGAGTTGGAGGCATTGTT GGAACGGTGTATGAAGGAGGGGGGGATAGCGATGAAGCAGCACCAGCACC AGCACCAGCACCAGCGCCAGCACCAGCGGTTGGGGAGTGGGATGCACTCG TCTTACCAGATGTGTTATGTCCTGCCTGGCACCGTCAGCAGCAGCAAGAG CAGCAGCAGCTGTCAAGATCAGGCCACTACCACACCCGAGGGCGGCAGTA CTCTGACTACGACCACCACTGCTCCTCCAGAGCCATTCGCTCCCCCTTCT TCCATCCTCTCCTTCCCCCCCCTCGCGCAATTCACGAATCTTGTCCTCTC TTCCTTCAACCAGTTGAGGCAGTGCTTGCCCTGGACCATGGCGGATGAAC TCCAATCCCTTTTCCTCCTTCACCTACGTGGGGCGGCAACGGTACTAATC GCTCACCAGGAGCAATTGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCA GCAGCAGCAGCAGCAGCAGCAACAACAACAGCAGCTGAAGCAGGGGGGCT TGTTGGTGCTGTACAAGCAGATGAGAAAAGAGGCAGAGAAGGTCGTCTTC CCGTACTTGTTGCGGTGTTTTGCGGCCATGGTGGTAGGAGGGGAGGAAAA GGAGGAAGGAGGGAATGAAGGAGGGAAGGCCGGGAGGAAGGAGATTATGA TAAAGGAGCAGGAGGCGGAGATAGAAAGGTTATGGACGGCATCGTTGAAT GAGCAGCTGTCGACGGCAGAGTAA back to top
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