NO04G01270.1, NO04G01270.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO04G01270.1
Unique NameNO04G01270.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1098
Alignment locationchr4:397567..398664 -

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:397567..398664 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO04G01270.1 vs.
Match: EWM28569.1 (serine threonine protein kinase [Nannochloropsis gaditana])

HSP 1 Score: 316.6 bits (810), Expect = 8.000e-83
Identity = 168/296 (56.76%), Postives = 202/296 (68.24%), Query Frame = 0 
Query:   12 TRRRRIADDSFSPLLFLLLLVGPTPAVAFSTLGSSSSSNFSPPIT-------STTPLIDRVPTFRLYQGGVCQTQVPGRGDAAECRARLHEAI-TSLTKPIATSSIDRNDKGSGKGGVSSSVSTSSRRRTVAAILEIDSLSALEDLLAEQQQHQEKSTQG-------TDEVLLVEFYGQACKQCIALAPLFESLPYVYPNRRLRFGRADVTNFPTLVVPPPPPQTFQGLDRSQNIEERLDGCPTCGGGGFVVCVECGGKGHLVRSVSGHTLADVCMTCMGQKKIPCPQCGGKCYLC 293
            T  RR   D   PLL LLL   P  A  FST  SSS+   +           +T PLIDRVPTFR YQGGVCQ Q+ GRG  AECRARLH AI T L    ++   +R +    + GV       S+R  VA I+EI+SL  LE +L +Q+  Q  + Q         D+VLLV+FYG++CKQC+ L PL+++LP+VY ++ LRFGRADVTNFPTLVVPPPPPQ F  LDRSQNIE+RL+GCP CGGGGFVVC EC G+GHL+RSV GHT+ADVCMTC+GQ+KIPC QCGGKCYLC
Sbjct:    8 TSARRTTQDFSLPLLVLLLSRLPL-ACTFSTPTSSSAIGINHGDVLKTLNNAATIPLIDRVPTFRFYQGGVCQLQLSGRGGLAECRARLHVAISTLLNNKTSSKQTEREEIHHEENGV-------SQRCLVADIVEIESLEMLEGMLEKQRVQQSSTAQSVSCGSNLNDDVLLVKFYGRSCKQCVELGPLYDTLPFVYRDKSLRFGRADVTNFPTLVVPPPPPQNFASLDRSQNIEDRLEGCPRCGGGGFVVCTECNGQGHLIRSVDGHTVADVCMTCVGQRKIPCQQCGGKCYLC 295
The following BLAST results are available for this feature:
BLAST of NO04G01270.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28569.18.000e-8356.76serine threonine protein kinase [Nannochloropsis g... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO04G01270NO04G01270Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO04G01270.1NO04G01270.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO04G01270.1.cds1NO04G01270.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO04G01270.1 ID=NO04G01270.1|Name=NO04G01270.1|organism=Nannochloropsis oceanica|type=mRNA|length=1098bp
CGCCCTCTGAGTGACTCCTTCAAGTGAGGAAACACAACCACACCCAAGCA
AACCCACACCCACACCCATTTACCAATACGCAATCATTTCTTCTCTACAT
CTCCCCATGGAGTACACAGATAGAGTGCAATCATGCCGCTTCCTCGAGTG
AGCACTGCCACCTGTACGAGAAGAAGAAGAATTGCGGACGACTCCTTCTC
TCCTCTCCTCTTCCTCCTACTCCTCGTTGGGCCGACTCCTGCGGTCGCTT
TCAGTACCCTGGGCAGCAGCAGCAGCAGCAATTTTAGCCCTCCAATCACT
TCTACGACACCTTTGATTGACCGTGTCCCGACCTTTCGCTTGTACCAGGG
AGGCGTGTGTCAGACACAGGTGCCGGGGCGTGGAGATGCCGCCGAGTGCC
GCGCTCGCCTGCATGAAGCCATCACGAGTTTGACAAAACCTATCGCTACA
AGCAGTATTGATCGCAACGACAAGGGAAGTGGAAAGGGGGGGGTAAGCAG
CAGTGTCTCGACAAGCTCAAGAAGACGCACCGTGGCGGCTATCCTCGAGA
TAGACTCACTTTCGGCTTTGGAAGATCTGCTGGCAGAGCAGCAACAGCAC
CAAGAGAAATCCACGCAAGGCACTGATGAGGTGCTGCTTGTCGAATTTTA
CGGACAAGCTTGCAAGCAATGTATTGCCCTCGCGCCTTTGTTTGAGTCCT
TGCCCTACGTCTACCCCAACCGGCGGCTGCGATTCGGGCGGGCAGACGTG
ACAAACTTCCCTACCTTGGTTGTACCACCACCACCGCCCCAAACCTTCCA
GGGCTTGGATCGTAGCCAAAATATTGAAGAACGGCTGGACGGGTGCCCTA
CCTGTGGTGGTGGTGGGTTTGTAGTTTGCGTGGAGTGTGGGGGAAAAGGG
CATTTGGTTCGGAGCGTGAGTGGCCATACTCTGGCAGACGTATGCATGAC
CTGTATGGGCCAAAAGAAGATACCATGTCCGCAGTGTGGGGGGAAATGTT
ACTTATGTTGAGGCGGTTAAGGAAGAGTGGGAAATGAATTGAAATCAAAG
TAAAGATTGATTATAAACTAAATGAAATGGTTGAACGTGGGTGGGGAG
back to top

protein sequence of NO04G01270.1

>NO04G01270.1-protein ID=NO04G01270.1-protein|Name=NO04G01270.1|organism=Nannochloropsis oceanica|type=polypeptide|length=293bp
MPLPRVSTATCTRRRRIADDSFSPLLFLLLLVGPTPAVAFSTLGSSSSSN
FSPPITSTTPLIDRVPTFRLYQGGVCQTQVPGRGDAAECRARLHEAITSL
TKPIATSSIDRNDKGSGKGGVSSSVSTSSRRRTVAAILEIDSLSALEDLL
AEQQQHQEKSTQGTDEVLLVEFYGQACKQCIALAPLFESLPYVYPNRRLR
FGRADVTNFPTLVVPPPPPQTFQGLDRSQNIEERLDGCPTCGGGGFVVCV
ECGGKGHLVRSVSGHTLADVCMTCMGQKKIPCPQCGGKCYLC*
back to top

mRNA from alignment at chr4:397567..398664-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO04G01270.1 ID=NO04G01270.1|Name=NO04G01270.1|organism=Nannochloropsis oceanica|type=mRNA|length=1098bp|location=Sequence derived from alignment at chr4:397567..398664- (Nannochloropsis oceanica)
CGCCCTCTGAGTGACTCCTTCAAGTGAGGAAACACAACCACACCCAAGCA
AACCCACACCCACACCCATTTACCAATACGCAATCATTTCTTCTCTACAT
CTCCCCATGGAGTACACAGATAGAGTGCAATCATGCCGCTTCCTCGAGTG
AGCACTGCCACCTGTACGAGAAGAAGAAGAATTGCGGACGACTCCTTCTC
TCCTCTCCTCTTCCTCCTACTCCTCGTTGGGCCGACTCCTGCGGTCGCTT
TCAGTACCCTGGGCAGCAGCAGCAGCAGCAATTTTAGCCCTCCAATCACT
TCTACGACACCTTTGATTGACCGTGTCCCGACCTTTCGCTTGTACCAGGG
AGGCGTGTGTCAGACACAGGTGCCGGGGCGTGGAGATGCCGCCGAGTGCC
GCGCTCGCCTGCATGAAGCCATCACGAGTTTGACAAAACCTATCGCTACA
AGCAGTATTGATCGCAACGACAAGGGAAGTGGAAAGGGGGGGGTAAGCAG
CAGTGTCTCGACAAGCTCAAGAAGACGCACCGTGGCGGCTATCCTCGAGA
TAGACTCACTTTCGGCTTTGGAAGATCTGCTGGCAGAGCAGCAACAGCAC
CAAGAGAAATCCACGCAAGGCACTGATGAGGTGCTGCTTGTCGAATTTTA
CGGACAAGCTTGCAAGCAATGTATTGCCCTCGCGCCTTTGTTTGAGTCCT
TGCCCTACGTCTACCCCAACCGGCGGCTGCGATTCGGGCGGGCAGACGTG
ACAAACTTCCCTACCTTGGTTGTACCACCACCACCGCCCCAAACCTTCCA
GGGCTTGGATCGTAGCCAAAATATTGAAGAACGGCTGGACGGGTGCCCTA
CCTGTGGTGGTGGTGGGTTTGTAGTTTGCGTGGAGTGTGGGGGAAAAGGG
CATTTGGTTCGGAGCGTGAGTGGCCATACTCTGGCAGACGTATGCATGAC
CTGTATGGGCCAAAAGAAGATACCATGTCCGCAGTGTGGGGGGAAATGTT
ACTTATGTTGAGGCGGTTAAGGAAGAGTGGGAAATGAATTGAAATCAAAG
TAAAGATTGATTATAAACTAAATGAAATGGTTGAACGTGGGTGGGGAG
back to top

Coding sequence (CDS) from alignment at chr4:397567..398664-

>NO04G01270.1 ID=NO04G01270.1|Name=NO04G01270.1|organism=Nannochloropsis oceanica|type=CDS|length=879bp|location=Sequence derived from alignment at chr4:397567..398664- (Nannochloropsis oceanica)
ATGCCGCTTCCTCGAGTGAGCACTGCCACCTGTACGAGAAGAAGAAGAAT
TGCGGACGACTCCTTCTCTCCTCTCCTCTTCCTCCTACTCCTCGTTGGGC
CGACTCCTGCGGTCGCTTTCAGTACCCTGGGCAGCAGCAGCAGCAGCAAT
TTTAGCCCTCCAATCACTTCTACGACACCTTTGATTGACCGTGTCCCGAC
CTTTCGCTTGTACCAGGGAGGCGTGTGTCAGACACAGGTGCCGGGGCGTG
GAGATGCCGCCGAGTGCCGCGCTCGCCTGCATGAAGCCATCACGAGTTTG
ACAAAACCTATCGCTACAAGCAGTATTGATCGCAACGACAAGGGAAGTGG
AAAGGGGGGGGTAAGCAGCAGTGTCTCGACAAGCTCAAGAAGACGCACCG
TGGCGGCTATCCTCGAGATAGACTCACTTTCGGCTTTGGAAGATCTGCTG
GCAGAGCAGCAACAGCACCAAGAGAAATCCACGCAAGGCACTGATGAGGT
GCTGCTTGTCGAATTTTACGGACAAGCTTGCAAGCAATGTATTGCCCTCG
CGCCTTTGTTTGAGTCCTTGCCCTACGTCTACCCCAACCGGCGGCTGCGA
TTCGGGCGGGCAGACGTGACAAACTTCCCTACCTTGGTTGTACCACCACC
ACCGCCCCAAACCTTCCAGGGCTTGGATCGTAGCCAAAATATTGAAGAAC
GGCTGGACGGGTGCCCTACCTGTGGTGGTGGTGGGTTTGTAGTTTGCGTG
GAGTGTGGGGGAAAAGGGCATTTGGTTCGGAGCGTGAGTGGCCATACTCT
GGCAGACGTATGCATGACCTGTATGGGCCAAAAGAAGATACCATGTCCGC
AGTGTGGGGGGAAATGTTACTTATGTTGA
back to top
Synonyms
Publications