NO04G01240.1, NO04G01240.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO04G01240.1
Unique NameNO04G01240.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1595
Alignment locationchr4:388320..389914 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:388320..389914 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO04G01240.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO04G01240NO04G01240Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO04G01240.1NO04G01240.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO04G01240.1.cds1NO04G01240.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO04G01240.1 ID=NO04G01240.1|Name=NO04G01240.1|organism=Nannochloropsis oceanica|type=mRNA|length=1595bp
AAGCGATCGCCTTCGAACACAACCGAGTCACGTGGTGTCAATGCTGCCAT
ATTATGAAATAGTGCACCCGTCGCACGCACGTAAATTTGATTGGTTTAAA
GTCATAGCATGCGTTCCACAAAAGCGTACTGAAGCCCACAAAGTACCCAA
AGCAAGCCAGAAGAGATGTAATTTTCCTATTCATTCTTTAAAGTTTTGCC
AGGATGCGGTTTCGGTGAAGGAGATGTGGGACGAGACTTTTCAGGTGGGG
AACCTACGAAACCAGCGGGTGTTTCATAATCGGGTTTCCACGGATGGTGT
CTCGGTGTCGGTCTTCTTTCACGTGGCGAAGGAGAGACTGAAGAGGGAGA
AAGCGGAGAGGGTCAGAGTGGAAAAGGAGGACGAGGAGAAGGAGATGCTG
GAACGTCAGCAGGGACAAGAAAACCTGCAGCCAGTCAGAGAGCGACGCAT
TGTCGCGATCGATCCCGGTCGCGTCAACCTGGTCACGGCGTTGGACTCGC
AGACGGGCAAGATCAAGACCTTGACGTGTCGTGCGTACTACGAAAAGGGG
CGGATCAACGAGTGCAAGAGAAAGTTTAACTCTTGGGAGGACGCACTCGG
TGACATCAATGCCGCCTTTTCGAGGACCACGATGAAGTCCTGCTGTCCCG
ACTTGCGTAGCGCTTACAGGGAGCTGATCGTACGGCATTACCACCGATTG
TGGGATGCCAGGTGTGAAAAGAAACGGGCGCGTGCGCATATGGCGGTGTA
TGCGGGGAAGCAGAAGGTCTTGGATGTTTTTTTTGCGGGCTTGACGGGGC
CAGGGCAGGCGAAGCCCATTATCGCGTATGGGGCGGGGATTTTCCCGCAC
ACAGGCAAGGGAGAGGTGAGCGTTCCGGTGAAGAGGGTGCTCCGGGTGTG
CGAAAGGTACTACAGAACAGTGTATGTACCCGAGCACCTGACGACAAAGG
TTCACCTCGATTGTGGGCAGCGCCTGAACCCTATTGCGAGAAGGACAGAA
GGAGAAGGAGGAGAAGGAGGAGGTGGTGGAGAAGGAGGTGGAGGAGGAGG
AGGAGGGGAAGGAGGAGGAGGAGGAGAAGGAGGAGGGGGAGGAGGCGGAG
GAGGCGGAGGAGGCGGAGGAGGCGGAGAAGGCGGAGGAGGACGAGGACCA
GGCAGAGGAGGAGGTCATGGGCGGGCCATCCGAGGACTGTATTGGTGTAA
CACCTGTGAACAGTTCGTGTCCCGGGACGGCAATGGGGCACGTAATATCC
TACGGGTGTACAGGAGAATGGTCCGTGGGGAAGCTCGTCCCCATGATCTT
CGGTTTGGTCAACCGCGGCAGGACATGCGGACACTCTATGTGTAGCCTTC
CCGCTGACCTCCTCTTTTATGCTCCTCCCCCTTCTCCTCCTGGCCCTGTG
TGGGCCGTCCGGGGACTTTGCCAGGTCAAAAAACCTGTCAAAGTCGCTAG
AAAAACTCGGACAAGGAAATAAGGGATGACAACACTTTCTTGTTGGAAGG
CTCCCCCTCGTATGCAAGTCCTCGAAGACGTCAGGTTGCATGCGATAGTT
CTAGAGAGATGTAGGAACTCAAAAGAACTATTCATTCAAGAGATA
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protein sequence of NO04G01240.1

>NO04G01240.1-protein ID=NO04G01240.1-protein|Name=NO04G01240.1|organism=Nannochloropsis oceanica|type=polypeptide|length=435bp
MLPYYEIVHPSHARKFDWFKVIACVPQKRTEAHKVPKASQKRCNFPIHSL
KFCQDAVSVKEMWDETFQVGNLRNQRVFHNRVSTDGVSVSVFFHVAKERL
KREKAERVRVEKEDEEKEMLERQQGQENLQPVRERRIVAIDPGRVNLVTA
LDSQTGKIKTLTCRAYYEKGRINECKRKFNSWEDALGDINAAFSRTTMKS
CCPDLRSAYRELIVRHYHRLWDARCEKKRARAHMAVYAGKQKVLDVFFAG
LTGPGQAKPIIAYGAGIFPHTGKGEVSVPVKRVLRVCERYYRTVYVPEHL
TTKVHLDCGQRLNPIARRTEGEGGEGGGGGEGGGGGGGGEGGGGGEGGGG
GGGGGGGGGGGGEGGGGRGPGRGGGHGRAIRGLYWCNTCEQFVSRDGNGA
RNILRVYRRMVRGEARPHDLRFGQPRQDMRTLYV*
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mRNA from alignment at chr4:388320..389914+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO04G01240.1 ID=NO04G01240.1|Name=NO04G01240.1|organism=Nannochloropsis oceanica|type=mRNA|length=1595bp|location=Sequence derived from alignment at chr4:388320..389914+ (Nannochloropsis oceanica)
AAGCGATCGCCTTCGAACACAACCGAGTCACGTGGTGTCAATGCTGCCAT
ATTATGAAATAGTGCACCCGTCGCACGCACGTAAATTTGATTGGTTTAAA
GTCATAGCATGCGTTCCACAAAAGCGTACTGAAGCCCACAAAGTACCCAA
AGCAAGCCAGAAGAGATGTAATTTTCCTATTCATTCTTTAAAGTTTTGCC
AGGATGCGGTTTCGGTGAAGGAGATGTGGGACGAGACTTTTCAGGTGGGG
AACCTACGAAACCAGCGGGTGTTTCATAATCGGGTTTCCACGGATGGTGT
CTCGGTGTCGGTCTTCTTTCACGTGGCGAAGGAGAGACTGAAGAGGGAGA
AAGCGGAGAGGGTCAGAGTGGAAAAGGAGGACGAGGAGAAGGAGATGCTG
GAACGTCAGCAGGGACAAGAAAACCTGCAGCCAGTCAGAGAGCGACGCAT
TGTCGCGATCGATCCCGGTCGCGTCAACCTGGTCACGGCGTTGGACTCGC
AGACGGGCAAGATCAAGACCTTGACGTGTCGTGCGTACTACGAAAAGGGG
CGGATCAACGAGTGCAAGAGAAAGTTTAACTCTTGGGAGGACGCACTCGG
TGACATCAATGCCGCCTTTTCGAGGACCACGATGAAGTCCTGCTGTCCCG
ACTTGCGTAGCGCTTACAGGGAGCTGATCGTACGGCATTACCACCGATTG
TGGGATGCCAGGTGTGAAAAGAAACGGGCGCGTGCGCATATGGCGGTGTA
TGCGGGGAAGCAGAAGGTCTTGGATGTTTTTTTTGCGGGCTTGACGGGGC
CAGGGCAGGCGAAGCCCATTATCGCGTATGGGGCGGGGATTTTCCCGCAC
ACAGGCAAGGGAGAGGTGAGCGTTCCGGTGAAGAGGGTGCTCCGGGTGTG
CGAAAGGTACTACAGAACAGTGTATGTACCCGAGCACCTGACGACAAAGG
TTCACCTCGATTGTGGGCAGCGCCTGAACCCTATTGCGAGAAGGACAGAA
GGAGAAGGAGGAGAAGGAGGAGGTGGTGGAGAAGGAGGTGGAGGAGGAGG
AGGAGGGGAAGGAGGAGGAGGAGGAGAAGGAGGAGGGGGAGGAGGCGGAG
GAGGCGGAGGAGGCGGAGGAGGCGGAGAAGGCGGAGGAGGACGAGGACCA
GGCAGAGGAGGAGGTCATGGGCGGGCCATCCGAGGACTGTATTGGTGTAA
CACCTGTGAACAGTTCGTGTCCCGGGACGGCAATGGGGCACGTAATATCC
TACGGGTGTACAGGAGAATGGTCCGTGGGGAAGCTCGTCCCCATGATCTT
CGGTTTGGTCAACCGCGGCAGGACATGCGGACACTCTATGTGTAGCCTTC
CCGCTGACCTCCTCTTTTATGCTCCTCCCCCTTCTCCTCCTGGCCCTGTG
TGGGCCGTCCGGGGACTTTGCCAGGTCAAAAAACCTGTCAAAGTCGCTAG
AAAAACTCGGACAAGGAAATAAGGGATGACAACACTTTCTTGTTGGAAGG
CTCCCCCTCGTATGCAAGTCCTCGAAGACGTCAGGTTGCATGCGATAGTT
CTAGAGAGATGTAGGAACTCAAAAGAACTATTCATTCAAGAGATA
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Coding sequence (CDS) from alignment at chr4:388320..389914+

>NO04G01240.1 ID=NO04G01240.1|Name=NO04G01240.1|organism=Nannochloropsis oceanica|type=CDS|length=1305bp|location=Sequence derived from alignment at chr4:388320..389914+ (Nannochloropsis oceanica)
ATGCTGCCATATTATGAAATAGTGCACCCGTCGCACGCACGTAAATTTGA
TTGGTTTAAAGTCATAGCATGCGTTCCACAAAAGCGTACTGAAGCCCACA
AAGTACCCAAAGCAAGCCAGAAGAGATGTAATTTTCCTATTCATTCTTTA
AAGTTTTGCCAGGATGCGGTTTCGGTGAAGGAGATGTGGGACGAGACTTT
TCAGGTGGGGAACCTACGAAACCAGCGGGTGTTTCATAATCGGGTTTCCA
CGGATGGTGTCTCGGTGTCGGTCTTCTTTCACGTGGCGAAGGAGAGACTG
AAGAGGGAGAAAGCGGAGAGGGTCAGAGTGGAAAAGGAGGACGAGGAGAA
GGAGATGCTGGAACGTCAGCAGGGACAAGAAAACCTGCAGCCAGTCAGAG
AGCGACGCATTGTCGCGATCGATCCCGGTCGCGTCAACCTGGTCACGGCG
TTGGACTCGCAGACGGGCAAGATCAAGACCTTGACGTGTCGTGCGTACTA
CGAAAAGGGGCGGATCAACGAGTGCAAGAGAAAGTTTAACTCTTGGGAGG
ACGCACTCGGTGACATCAATGCCGCCTTTTCGAGGACCACGATGAAGTCC
TGCTGTCCCGACTTGCGTAGCGCTTACAGGGAGCTGATCGTACGGCATTA
CCACCGATTGTGGGATGCCAGGTGTGAAAAGAAACGGGCGCGTGCGCATA
TGGCGGTGTATGCGGGGAAGCAGAAGGTCTTGGATGTTTTTTTTGCGGGC
TTGACGGGGCCAGGGCAGGCGAAGCCCATTATCGCGTATGGGGCGGGGAT
TTTCCCGCACACAGGCAAGGGAGAGGTGAGCGTTCCGGTGAAGAGGGTGC
TCCGGGTGTGCGAAAGGTACTACAGAACAGTGTATGTACCCGAGCACCTG
ACGACAAAGGTTCACCTCGATTGTGGGCAGCGCCTGAACCCTATTGCGAG
AAGGACAGAAGGAGAAGGAGGAGAAGGAGGAGGTGGTGGAGAAGGAGGTG
GAGGAGGAGGAGGAGGGGAAGGAGGAGGAGGAGGAGAAGGAGGAGGGGGA
GGAGGCGGAGGAGGCGGAGGAGGCGGAGGAGGCGGAGAAGGCGGAGGAGG
ACGAGGACCAGGCAGAGGAGGAGGTCATGGGCGGGCCATCCGAGGACTGT
ATTGGTGTAACACCTGTGAACAGTTCGTGTCCCGGGACGGCAATGGGGCA
CGTAATATCCTACGGGTGTACAGGAGAATGGTCCGTGGGGAAGCTCGTCC
CCATGATCTTCGGTTTGGTCAACCGCGGCAGGACATGCGGACACTCTATG
TGTAG
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Synonyms
Publications