NO04G01210.2, NO04G01210.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO04G01210.2
Unique NameNO04G01210.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1953
Alignment locationchr4:378800..380925 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:378800..380925 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO04G01210.2 vs.
Match: XP_005852741.1 (hypothetical protein NGA_0720900, partial [Nannochloropsis gaditana CCMP526]; EKU23090.1 hypothetical protein NGA_0720900, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 317.4 bits (812), Expect = 5.000e-83
Identity = 174/277 (62.82%), Postives = 210/277 (75.81%), Query Frame = 0 
Query:   39 GRKRARKIVTQFHKVNDAIAVLEKNASLAPAEKEATRKELEGNLEALGGRAAYQSASQLSVSFHNTSKWVLARLQAMGVLAPKPSSTSSSSSSSSVPPVRQRKLRLLEVGAITTTLLDCPALETTAIDLLSRHARIRQQDFFTLPLPPSLTFHVIVSSMVINSLPTPVSRGLFLRRCHSYLQPHTGHLFLMLPSSCLTHSKNITTAKFRLMLTENIGFRIMEERWTPKVAYFVLRAEDGKVERIRGSEGEGKGGGKAGGRRERKASSSWAKNFDVVL 316
            GRKRARKIVTQFHKVNDA+A+LE++A+L   +KEA R  L+ +LEALGGRAAYQSASQLSVSFH+TSKWVLARLQAMG++  + + + S S  S  P       RLLEVGAITTTLLDCPA++TTAIDLLSRHARI+Q DFF LP PP  TF VIV+SM+INSLPT  +RG FLRRCH+YL+   G+LFL+LPSSCLTHSK +T  KFR ++T  +GF ++EE+WTPK   FVLRA  GK +  R + G           RE+  SSSWAK FD++L
Sbjct:    1 GRKRARKIVTQFHKVNDALAILEEDANLNLVDKEAHRSRLQESLEALGGRAAYQSASQLSVSFHSTSKWVLARLQAMGIIRMQSAPSLSPSQPSQKP-------RLLEVGAITTTLLDCPAVQTTAIDLLSRHARIQQIDFFHLPQPPLSTFDVIVASMLINSLPTASARGDFLRRCHAYLEASKGYLFLILPSSCLTHSKYMTVGKFRSLVTTRVGFAVVEEKWTPKTVAFVLRAS-GKCDEGRLTAG-----------REKVTSSSWAKKFDILL 258
The following BLAST results are available for this feature:
BLAST of NO04G01210.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005852741.15.000e-8362.82hypothetical protein NGA_0720900, partial [Nannoch... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO04G01210NO04G01210Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO04G01210.2NO04G01210.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO04G01210.2.cds1NO04G01210.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G01210.2.cds2NO04G01210.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO04G01210.2 ID=NO04G01210.2|Name=NO04G01210.2|organism=Nannochloropsis oceanica|type=mRNA|length=1953bp
CCTTCTTCCCGTTCCTCTTCTTCCTCTTCTTCCTCGTCCTCCTCCTCCTC
CTCTTCGCCTTCCCCCTCTCCTACTCCTGCATCGTCCGAATCAATCACCA
TGGTTTGTTGAAATCCACCCGCTCTGCCTGGATGGTGTGATCGGTGTGGT
ATTGGGGGAGGGACTGCGCCGTCGTCCTCGCTAGAGCTGTCGGTGTAATC
GCTCTCCTCATCATCGCTGCTCACCGCCATGGCCGCGTCCGTACGTGCAG
GCCCACACTTTGTCTATTTTTTCCATGTTTGCGTGTAGGTCGTGTTATAG
CTTGGTAAAATTAAGTGCTGTGGACGCATCAGAAAGGGGGAGAGACGGAC
CCGGCGATGCGGCGATCGTAGGCCGACAACGCTTATATAGCTTCAACTAA
AAGGCTGAAGGAAAGTCTCCATGATGCACCTTATCATGCTAATTCTGCAT
GGGGCAATACCTCACGTGATTACAGAAATATACATCCTTACTCGTCCTCC
TGGACGAAGGGGACTGAGAGACTTCCCTTCCTTTTTGTGCTGCTTCGTGA
TGATGGGCTGCGACGAGCCCGCTCTGTTCTCACTCTGCCCATCCACACCC
ACCACACACACAAGAGAAAGCAAGCATGGACATGGTCAGCAGCCGCAGGA
GCAGTTCAAGCTACAGTCGCTGCCAGACTTAACAGGGCTGGCACCGCGGT
CGTGTTCGAGTGTGGCCCGCGGGGTGCAGCCTGCATCAACGGTCAGTCGC
AAAGGATATCACGCATCCAACTACCAGCCGTAGCCATGGGGAAGAAACGC
AAATCCCAACCCGTAGTGGAGGTCGTTAAAAGTCAGTTTATGGGCGGCCT
GTCTAGTCCAGATCCCGCGGCGTGGCGCATTGTGTATGATTTGTGTATTG
TGTGTGTCCACCCAAAAAACTCCCACCTACCCCTCCCTCCAACCCCATCC
TCTCAACCAGCCTCTGGCTCATCTCAACGAACCTCGATCCACAAAAACAG
GCCGGAAACGCGCCCGCAAAATCGTGACTCAATTCCACAAAGTGAACGAT
GCTATTGCGGTGCTCGAGAAGAACGCCAGCTTGGCCCCAGCCGAAAAAGA
GGCGACCCGCAAGGAGCTGGAAGGTAACCTAGAAGCTCTCGGTGGCCGCG
CCGCCTACCAGTCCGCCTCTCAACTCTCCGTCTCCTTCCACAACACCAGC
AAGTGGGTCCTCGCCCGCTTGCAAGCCATGGGTGTTCTCGCGCCCAAGCC
TTCTTCCACCTCCTCGTCGTCGTCCTCTTCCTCCGTCCCTCCCGTCCGTC
AAAGAAAGCTCCGCCTCTTGGAGGTTGGCGCCATCACCACCACCCTCCTC
GATTGCCCCGCTCTCGAGACCACCGCCATCGACCTCCTCTCCCGCCACGC
CCGGATTCGACAACAAGATTTTTTCACCCTCCCCCTTCCTCCCTCACTTA
CCTTCCACGTTATCGTCTCCTCTATGGTGATCAATTCTCTCCCCACTCCT
GTTTCCCGTGGCCTCTTTCTCCGACGCTGCCACTCCTATCTCCAGCCACA
CACCGGCCACCTGTTCCTCATGCTTCCTTCATCGTGCCTGACGCACTCTA
AAAACATCACGACGGCCAAGTTTCGTTTAATGTTGACAGAAAACATAGGG
TTTAGAATCATGGAAGAGCGGTGGACTCCCAAGGTGGCTTATTTTGTGTT
GCGGGCAGAAGACGGAAAGGTGGAGAGAATAAGGGGAAGTGAAGGAGAAG
GGAAAGGAGGAGGAAAAGCGGGTGGACGGCGGGAGAGGAAAGCGTCTTCG
TCATGGGCGAAGAATTTCGATGTTGTGTTATAGAGTCGGGAGGGAGAGGG
AGGGAAGGAGAGAGGCGCCTGGGTGGGATGGGCCGCACTGTAGTGCAGGA
AATTATGTTCAGGAATGTAAAGAATCTAGCTGCCCCTAAAAAAAATACAG
AAT
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protein sequence of NO04G01210.2

>NO04G01210.2-protein ID=NO04G01210.2-protein|Name=NO04G01210.2|organism=Nannochloropsis oceanica|type=polypeptide|length=316bp
MICVLCVSTQKTPTYPSLQPHPLNQPLAHLNEPRSTKTGRKRARKIVTQF
HKVNDAIAVLEKNASLAPAEKEATRKELEGNLEALGGRAAYQSASQLSVS
FHNTSKWVLARLQAMGVLAPKPSSTSSSSSSSSVPPVRQRKLRLLEVGAI
TTTLLDCPALETTAIDLLSRHARIRQQDFFTLPLPPSLTFHVIVSSMVIN
SLPTPVSRGLFLRRCHSYLQPHTGHLFLMLPSSCLTHSKNITTAKFRLML
TENIGFRIMEERWTPKVAYFVLRAEDGKVERIRGSEGEGKGGGKAGGRRE
RKASSSWAKNFDVVL*
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mRNA from alignment at chr4:378800..380925+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO04G01210.2 ID=NO04G01210.2|Name=NO04G01210.2|organism=Nannochloropsis oceanica|type=mRNA|length=2126bp|location=Sequence derived from alignment at chr4:378800..380925+ (Nannochloropsis oceanica)
CCTTCTTCCCGTTCCTCTTCTTCCTCTTCTTCCTCGTCCTCCTCCTCCTC
CTCTTCGCCTTCCCCCTCTCCTACTCCTGCATCGTCCGAATCAATCACCA
TGGTTTGTTGAAATCCACCCGCTCTGCCTGGATGGTGTGATCGGTGTGGT
ATTGGGGGAGGGACTGCGCCGTCGTCCTCGCTAGAGCTGTCGGTGTAATC
GCTCTCCTCATCATCGCTGCTCACCGCCATGGCCGCGTCCGTACGTGCAG
GCCCACACTTTGTCTATTTTTTCCATGTTTGCGTGTAGGTCGTGTTATAG
CTTGGTAAAATTAAGTGCTGTGGACGCATCAGAAAGGGGGAGAGACGGAC
CCGGCGATGCGGCGATCGTAGGCCGACAACGCTTATATAGCTTCAACTAA
AAGGCTGAAGGAAAGTCTCCATGATGCACCTTATCATGCTAATTCTGCAT
GGGGCAATACCTCACGTGATTACAGAAATATACATCCTTACTCGTCCTCC
TGGACGAAGGGGACTGAGAGACTTCCCTTCCTTTTTGTGCTGCTTCGTGA
TGATGGGCTGCGACGAGCCCGCTCTGTTCTCACTCTGCCCATCCACACCC
ACCACACACACAAGAGAAAGCAAGCATGGACATGGTCAGCAGCCGCAGGA
GCAGTTCAAGCTACAGTCGCTGCCAGACTTAACAGGGCTGGCACCGCGGT
CGTGTTCGAGTGTGGCCCGCGGGGTGCAGCCTGCATCAACGGTCAGTCGC
AAAGGATATCACGCATCCAACTACCAGCCGTAGCCATGGGGAAGAAACGC
AAATCCCAACCCGTAGTGGAGGTCGTTAAAAGTCAGTTTATGGGCGGCCT
GTCTAGTCCAGATCCCGCGGCGTGGCGCATTGTGTATGATTTGTGTATTG
TGTGTGTCCACCCAAAAAACTCCCACCTACCCCTCCCTCCAACCCCATCC
TCTCAACCAGCCTCTGGCTCATCTCAACGAACCTCGATCCACAAAAACAG
GCCGGAAACGCGCCCGCAAAATCGTGACTCAATTCCACAAAGTGAACGAT
GCTATTGCGGTGCTCGAGAAGAACGCCAGCTTGGCCCCAGCCGAAAAAGA
GGCGACCCGCAAGGAGTAAGTAAGTTCCCATTCCACGAAGTCGGGAAAGT
TGGCCTCTTTGCCTCTGCCTTGCATGCTCTCCCCAAATCATTATTAGCTT
ATCTTCCTGATATAGAAGACCTGAACCGCTCACCATTTCCCTTCACTTCA
TGTCACACATCACAACCCTTTTTTAAAAAATATCAAAGGCTGGAAGGTAA
CCTAGAAGCTCTCGGTGGCCGCGCCGCCTACCAGTCCGCCTCTCAACTCT
CCGTCTCCTTCCACAACACCAGCAAGTGGGTCCTCGCCCGCTTGCAAGCC
ATGGGTGTTCTCGCGCCCAAGCCTTCTTCCACCTCCTCGTCGTCGTCCTC
TTCCTCCGTCCCTCCCGTCCGTCAAAGAAAGCTCCGCCTCTTGGAGGTTG
GCGCCATCACCACCACCCTCCTCGATTGCCCCGCTCTCGAGACCACCGCC
ATCGACCTCCTCTCCCGCCACGCCCGGATTCGACAACAAGATTTTTTCAC
CCTCCCCCTTCCTCCCTCACTTACCTTCCACGTTATCGTCTCCTCTATGG
TGATCAATTCTCTCCCCACTCCTGTTTCCCGTGGCCTCTTTCTCCGACGC
TGCCACTCCTATCTCCAGCCACACACCGGCCACCTGTTCCTCATGCTTCC
TTCATCGTGCCTGACGCACTCTAAAAACATCACGACGGCCAAGTTTCGTT
TAATGTTGACAGAAAACATAGGGTTTAGAATCATGGAAGAGCGGTGGACT
CCCAAGGTGGCTTATTTTGTGTTGCGGGCAGAAGACGGAAAGGTGGAGAG
AATAAGGGGAAGTGAAGGAGAAGGGAAAGGAGGAGGAAAAGCGGGTGGAC
GGCGGGAGAGGAAAGCGTCTTCGTCATGGGCGAAGAATTTCGATGTTGTG
TTATAGAGTCGGGAGGGAGAGGGAGGGAAGGAGAGAGGCGCCTGGGTGGG
ATGGGCCGCACTGTAGTGCAGGAAATTATGTTCAGGAATGTAAAGAATCT
AGCTGCCCCTAAAAAAAATACAGAAT
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Coding sequence (CDS) from alignment at chr4:378800..380925+

>NO04G01210.2 ID=NO04G01210.2|Name=NO04G01210.2|organism=Nannochloropsis oceanica|type=CDS|length=948bp|location=Sequence derived from alignment at chr4:378800..380925+ (Nannochloropsis oceanica)
ATGATTTGTGTATTGTGTGTGTCCACCCAAAAAACTCCCACCTACCCCTC
CCTCCAACCCCATCCTCTCAACCAGCCTCTGGCTCATCTCAACGAACCTC
GATCCACAAAAACAGGCCGGAAACGCGCCCGCAAAATCGTGACTCAATTC
CACAAAGTGAACGATGCTATTGCGGTGCTCGAGAAGAACGCCAGCTTGGC
CCCAGCCGAAAAAGAGGCGACCCGCAAGGAGCTGGAAGGTAACCTAGAAG
CTCTCGGTGGCCGCGCCGCCTACCAGTCCGCCTCTCAACTCTCCGTCTCC
TTCCACAACACCAGCAAGTGGGTCCTCGCCCGCTTGCAAGCCATGGGTGT
TCTCGCGCCCAAGCCTTCTTCCACCTCCTCGTCGTCGTCCTCTTCCTCCG
TCCCTCCCGTCCGTCAAAGAAAGCTCCGCCTCTTGGAGGTTGGCGCCATC
ACCACCACCCTCCTCGATTGCCCCGCTCTCGAGACCACCGCCATCGACCT
CCTCTCCCGCCACGCCCGGATTCGACAACAAGATTTTTTCACCCTCCCCC
TTCCTCCCTCACTTACCTTCCACGTTATCGTCTCCTCTATGGTGATCAAT
TCTCTCCCCACTCCTGTTTCCCGTGGCCTCTTTCTCCGACGCTGCCACTC
CTATCTCCAGCCACACACCGGCCACCTGTTCCTCATGCTTCCTTCATCGT
GCCTGACGCACTCTAAAAACATCACGACGGCCAAGTTTCGTTTAATGTTG
ACAGAAAACATAGGGTTTAGAATCATGGAAGAGCGGTGGACTCCCAAGGT
GGCTTATTTTGTGTTGCGGGCAGAAGACGGAAAGGTGGAGAGAATAAGGG
GAAGTGAAGGAGAAGGGAAAGGAGGAGGAAAAGCGGGTGGACGGCGGGAG
AGGAAAGCGTCTTCGTCATGGGCGAAGAATTTCGATGTTGTGTTATAG
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Synonyms
Publications