NO04G01100.1, NO04G01100.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO04G01100.1
Unique Name	NO04G01100.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	1839
Alignment location	chr4:346566..349717 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr4	genome	chr4:346566..349717 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

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BLAST of NO04G01100.1 vs.
Match: EWM28518.1 (glycerophosphoryl diester phosphodiesterase [Nannochloropsis gaditana])

HSP 1 Score: 551.6 bits (1420), Expect = 3.100e-153
Identity = 308/469 (65.67%), Postives = 349/469 (74.41%), Query Frame = 0

Query:    2 ATAYVPARPASLVLPTFQRPHVIAHRGACGYLPEHTLQAYRLAIDLGVEYIEPDLVLTKDGHLICRHDVDLSETTDVSIRPEFAGRRRNITFASGVAPRDPITGEAPLVSVQGFFSFDFTLAEIKTLRAKQRLSQRSSTYNGLFQVPTFDEVIDMVREAEGTMERKVGIYAEVKEPHFFHLNGFDIESKVVQVLE---------------------------------------IPYVPLVQLLLSPLSKEHPSVGEGVSHHLGREAMYGDVPLSEIATYASGIGPAKSVFTSMEPAAARAVVDAAHELDLAVHPWTFRREAIYVDRTFESDSDEELRYFYECLNVDALFVEFPDQASMVIERMLNDDSGGTADAATGSGVAIPSNSADLGAGGASGIGTKTTALFPSRRGR-NKSNRSSSTATQHT----PLFTPASPSTPSSSDSVTSTSTSTTESTGGSAGMAPAV 427
            ++ +   RPASLVLP+ QRPHVIAHRGACGYLPEHTLQAYRLAIDLGVEYIEPDLVLTKDGHLICRHDVDLSETTDVS+RPEFAGRRRNITF S VA RDP TG APLVSV+GFFSFDFTLAEIKTLRAKQRL+QRSSTYNGLFQVPT +EV+DMVREAEG   RKVGIYAE+KEP+FFHLNGFDIESKVV+VL+                                       IP+VPLVQLLLSPLSKEH SVG+GVSHHLGREA +GD+ L EIA YASGIGPAKSVFTSM+PA ARAVVD AHELDLAVHPWTFRREA+YVD  F++DSDEELR+F+E LNVDALFVEFPDQASMVIE+ML+DDS         +G+   S      A  A+   T +TA  PSRRGR ++SNRSSS++   T    P F+  +  T +  D +    T  + +      +A +V
Sbjct:   35 SSGFAHVRPASLVLPSTQRPHVIAHRGACGYLPEHTLQAYRLAIDLGVEYIEPDLVLTKDGHLICRHDVDLSETTDVSLRPEFAGRRRNITFPSEVAVRDPDTGAAPLVSVEGFFSFDFTLAEIKTLRAKQRLTQRSSTYNGLFQVPTLEEVVDMVREAEGATGRKVGIYAELKEPYFFHLNGFDIESKVVEVLQTKDLGVRSSLPHLVPGPDVPAPLVLQCFDPYTLRRLAQRIPHVPLVQLLLSPLSKEHSSVGQGVSHHLGREATFGDMTLPEIAAYASGIGPAKSVFTSMDPAVARAVVDEAHELDLAVHPWTFRREAMYVDTPFQADSDEELRFFFESLNVDALFVEFPDQASMVIEKMLSDDS--------EAGLEDVSPEIAQAASAAARSSTLSTAPLPSRRGRSSRSNRSSSSSHAKTGREAPAFSVTNGKTSAPKDVMAEIDTMWSSALSALRSLAGSV 495

The following BLAST results are available for this feature:

BLAST of NO04G01100.1 vs.

BLAST of NO04G01100.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM28518.1	3.100e-153	65.67	glycerophosphoryl diester phosphodiesterase [Nanno...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO04G01100	NO04G01100	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO04G01100.1	NO04G01100.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO04G01100.1.cds1	NO04G01100.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO04G01100.1.cds2	NO04G01100.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO04G01100.1.cds3	NO04G01100.1.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO04G01100.1.cds4	NO04G01100.1.cds4	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO04G01100.1.cds5	NO04G01100.1.cds5	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO04G01100.1.cds6	NO04G01100.1.cds6	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr4:346566..349717-
coding sequence from alignment at chr4:346566..349717-

mRNA sequence

>NO04G01100.1 ID=NO04G01100.1|Name=NO04G01100.1|organism=Nannochloropsis oceanica|type=mRNA|length=1839bp
ATGGCCACCGCCTATGTACCCGCCCGACCCGCAAGTCTTGTCCTACCCAC
ATTTCAGAGGCCGCACGTGATTGCGCACCGCGGAGCGTGCGGATACTTGC
CGGAGCATACTCTCCAAGCCTACCGTCTGGCCATTGACCTGGGCGTGGAA
TACATCGAACCCGATCTCGTGCTCACTAAGGACGGTCACTTGATCTGCCG
CCACGACGTCGACCTCTCCGAAACCACCGACGTCTCTATCCGCCCTGAAT
TTGCAGGCCGGCGCCGCAACATCACCTTTGCTTCCGGCGTCGCCCCCCGC
GACCCCATCACCGGCGAAGCCCCCCTTGTGTCAGTCCAAGGGTTCTTTTC
CTTCGATTTCACTCTGGCGGAAATTAAGACGTTGCGGGCCAAGCAACGGT
TGAGCCAGCGGAGTAGCACGTATAATGGTCTCTTCCAAGTACCTACTTTC
GACGAAGTCATCGACATGGTCCGTGAAGCCGAAGGCACTATGGAGCGAAA
AGTGGGGATATATGCGGAGGTCAAGGAGCCTCACTTCTTCCACCTCAACG
GCTTTGACATCGAGAGCAAAGTCGTCCAAGTCCTCGAAATACCTTACGTG
CCTCTCGTCCAGCTCCTGCTCTCCCCCCTCTCGAAGGAGCACCCTTCCGT
CGGAGAGGGCGTCAGCCACCATCTTGGTCGAGAGGCCATGTACGGAGACG
TTCCTCTGAGCGAGATAGCGACATACGCGAGTGGCATAGGGCCTGCAAAG
AGCGTCTTTACCTCTATGGAACCTGCGGCGGCAAGGGCGGTGGTGGACGC
AGCGCATGAGCTTGATTTGGCGGTGCATCCCTGGACGTTTAGGAGAGAGG
CAATTTACGTGGATAGGACTTTTGAGAGCGATTCGGATGAGGAGTTGAGG
TATTTCTACGAGTGTTTGAATGTGGACGCGCTTTTCGTGGAGTTTCCTGA
CCAGGCGAGTATGGTGATAGAGAGGATGCTGAATGATGACAGTGGTGGCA
CAGCCGATGCTGCCACTGGCAGTGGGGTTGCTATCCCGTCCAATTCCGCT
GACCTTGGGGCGGGTGGTGCGTCTGGAATTGGCACGAAAACAACAGCGCT
GTTTCCGTCGCGGAGAGGGCGAAACAAGAGCAATCGCAGCAGCAGCACGG
CCACTCAGCATACCCCGCTCTTCACCCCAGCCTCTCCCTCGACTCCTTCC
TCCTCAGATTCTGTCACAAGTACCAGTACGAGCACTACCGAAAGCACAGG
AGGATCAGCTGGTATGGCACCAGCAGTAACCACACAATCATCACCGTCAG
CAGCAGCGGCAGCAGCACCAGCCGGGCCTTCAGCAGGGTCGACGGTGGCG
ATGCTCTTCAGTTCGTGGATAGGGGAGAGGGGAGAAAGCAGTGCACAGCG
GCAGAAGCTGGGGGGAGCGGAAGTCGTTTTGAGAAGAGGAACAGATGGAT
ATGCAGCAGCTGCTGCAGCGATAGCAGCAGCAGCAGTAGTTGTAGCAGTA
GCAGTAGTAGTAGTAGTAGCAGCAGCAGCAGCAGGAGAAGTAGCACTGAA
CAAGAACAACATCAACATCATTCACAACGACGATGAGGACGACAACAACA
ACAACAACAACTATAACAACAGCAGCAGCAACACCATTACCACCACCACC
ACCACCACCACCAGTGGGTGTACATATGAGGGGATGGAGAAATGCGATAA
CGGCGAAGGGCGCGTCACGGTTCCCTTTCTCATACATTTTTCTCTTGTCC
CAGAGCATTTTCTTGCACAGCTTGTCCTCTGTAGGTTGGTGAACCGACAG
CGCGAGGGTCCGTCCTCGGAGAAAGAAAGGGAAAGATGA

protein sequence of NO04G01100.1

>NO04G01100.1-protein ID=NO04G01100.1-protein|Name=NO04G01100.1|organism=Nannochloropsis oceanica|type=polypeptide|length=613bp
MATAYVPARPASLVLPTFQRPHVIAHRGACGYLPEHTLQAYRLAIDLGVE
YIEPDLVLTKDGHLICRHDVDLSETTDVSIRPEFAGRRRNITFASGVAPR
DPITGEAPLVSVQGFFSFDFTLAEIKTLRAKQRLSQRSSTYNGLFQVPTF
DEVIDMVREAEGTMERKVGIYAEVKEPHFFHLNGFDIESKVVQVLEIPYV
PLVQLLLSPLSKEHPSVGEGVSHHLGREAMYGDVPLSEIATYASGIGPAK
SVFTSMEPAAARAVVDAAHELDLAVHPWTFRREAIYVDRTFESDSDEELR
YFYECLNVDALFVEFPDQASMVIERMLNDDSGGTADAATGSGVAIPSNSA
DLGAGGASGIGTKTTALFPSRRGRNKSNRSSSTATQHTPLFTPASPSTPS
SSDSVTSTSTSTTESTGGSAGMAPAVTTQSSPSAAAAAAPAGPSAGSTVA
MLFSSWIGERGESSAQRQKLGGAEVVLRRGTDGYAAAAAAIAAAAVVVAV
AVVVVVAAAAAGEVALNKNNINIIHNDDEDDNNNNNNYNNSSSNTITTTT
TTTTSGCTYEGMEKCDNGEGRVTVPFLIHFSLVPEHFLAQLVLCRLVNRQ
REGPSSEKERER*

mRNA from alignment at chr4:346566..349717-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO04G01100.1 ID=NO04G01100.1|Name=NO04G01100.1|organism=Nannochloropsis oceanica|type=mRNA|length=3152bp|location=Sequence derived from alignment at chr4:346566..349717- (Nannochloropsis oceanica)
ATGGCCACCGCCTATGTACCCGCCCGACCCGCAAGTCTTGTCCTACCCAC
ATTTCAGAGGCCGCACGTGATTGCGCACCGCGGAGGTGAGTAGAAAGAGA
GGACATGGGACGGGGTGATGCCGTGTGGAGCGGGGAGGCTGGCTCGGGGG
TAGCGGCTGTGCCATGGGGCCCTCGTATGTTAAGGAAAGACCCTGGACCA
ATATTCTCACGCCATCTTACAAATAAACACATTCATAGCGTGCGGATACT
TGCCGGAGCATACTCTCCAAGCCTACCGTCTGGCCATTGACCTGGGCGTG
GAATACATCGAACCCGATCTCGTGCTCACTAAGGACGGTCACTTGGTACG
TACCTTTCTCCTCACCCACCCCGACCCAATCGCCCTCCCCCATTCTCTCC
CTGCATTCTTATGAATTTGTGCATGTCTGTGCGTCTAGATAGCGTTGGCG
GACCAAGGCGAGTTTGTATGGGAGCCTGCAAGGAATGTGGGCCTTCCTAG
GAATCTTCAGATTCCCATGTTCGCCGTCTGGAAAAAGATCGAATTTCTCG
AATAGCCTGGGCGCTGAAGGGGTGCACAAGCACTTTAATCACTTTTTCCA
CACCCATAGACGTGTCTTTTGTGACTTATTTGAATAGTGGCCTTATAAGT
GGATATGGTGCGGGGGTGGGTGCTCGGACCACTCACCCCCTCTGCCCCAG
GCCCTAGAAACACGACACCCGCAAGGCATATGTATGAGTGCTAGAATGTT
CCTGATTCATTTACTCCGAAAATTTTTCAATGAAGACGACGCAAGCGAGT
CATATTGATTCTTAGACTCAGACCCACACTCACCATAACCACCCATCCTT
CCCTCTCTCCCTCCCTCCCTATCCCTCTCCTTTAGATCTGCCGCCACGAC
GTCGACCTCTCCGAAACCACCGACGTCTCTATCCGCCCTGAATTTGCAGG
CCGGCGCCGCAACATCACCTTTGCTTCCGGCGTCGCCCCCCGCGACCCCA
TCACCGGCGAAGCCCCCCTTGTGTCAGTCCAAGGGTTCTTTTCCTTCGAT
TTCACTCTGGCGGAAATTAAGACGTTGCGGGCCAAGCAACGGTTGAGCCA
GCGGAGTAGCACGTATAATGGTCTCTTCCAAGTACCTACTTTCGACGAAG
TCATCGACATGGTCCGTGAAGCCGAAGGCACTATGGAGCGAAAAGTGGGG
ATATATGCGGAGGTCAAGGAGCCTCACTTCTTCCACCTCAACGGCTTTGA
CATCGAGAGCAAAGTCGTCCAAGTCCTCGAGTCCAAAGATCTTGGCATGC
GACCCCCCTCCCCCACCCTTCCCCCCCCGGGCCCGAGGATCCTACCCCGC
TCGTTATTCAGTGCTTCGACCCCTCCACACTTCGCTCCCTCGCCCACAGA
ATACCTTACGTGCCTCTCGTCCAGCTCCTGCTCTCCCCCCTCTCGAAGGA
GCACCCTTCCGTCGGAGAGGGCGTCAGCCACCATCTTGGTCGAGAGGCCA
TGTACGGAGACGTTCCTCTGAGCGAGATAGCGACATACGCGAGTGGCATA
GGGCCTGCAAAGAGCGTCTTTACCTCTATGGAACCTGCGGCGGCAAGGGC
GGTGGTGGACGCAGCGCATGAGCTTGATTTGGCGGTGCATCCCTGGACGT
TTAGGAGAGAGGCAATTTACGTGGATAGGACTTTTGAGAGCGATTCGGAT
GAGGAGTTGAGGTATTTCTACGAGTGTTTGAATGTGGACGCGCTTTTCGT
GGAGTTTCCTGACCAGGCGAGTATGGTGATAGAGAGGATGCTGAATGATG
ACAGTGGTGGCACAGCCGATGCTGCCACTGGCAGTGGGGTTGCTATCCCG
TCCAATTCCGCTGACCTTGGGGCGGGTGGTGCGTCTGGAATTGGCACGAA
AACAACAGCGCTGTTTCCGTCGCGGAGAGGGCGAAACAAGAGCAATCGCA
GCAGCAGCACGGCCACTCAGCATACCCCGCTCTTCACCCCAGCCTCTCCC
TCGACTCCTTCCTCCTCAGATTCTGTCACAAGTACCAGTACGAGCACTAC
CGAAAGCACAGGAGGATCAGCTGGTATGGCACCAGCAGTAACCACACAAT
CATCACCGTCAGCAGCAGCGGCAGCAGCACCAGCCGGGCCTTCAGCAGGG
TCGACGGTGGCGATGCTCTTCAGTTCGTGGATAGGGGAGAGGGGAGAAAG
CAGTGCACAGCGGCAGAAGCTGGGGGGAGGTGAGAAAGAGAATGAGACAA
GTATGCAGGCGAGTCATGCGGGGGCTTGTTCGGTTGATGGCGTCGGTGGG
GGGGTGTATCGCCTGCCTTCGACTGTATTGCCCTGGTTCAAGCGGAAGTC
GTTTTGAGAAGAGGAACAGATGGATATGCAGCAGCTGCTGCAGCGATAGC
AGCAGCAGCAGTAGTTGTAGCAGTAGCAGTAGTAGTAGTAGTAGCAGCAG
CAGCAGCAGGAGAAGTAGCACTGGTAGGCAACGGATTTTTTGGTGGGAGG
AGGAAGGGGGAGGGCAGATTGTTCTGTCATGAGTCTATGTCTTACTAGGA
CTTGTTGATGACGGAAGAGCAAGAAGGAGTAAGATGGATTAAAACAACAA
TACGCGCGTGAGAGAGCCCAAGAAACGAGATATATTACGGAATTACGGAA
ACAGAGAAGGGAGGATTAATAAACAGAGCAGAGGATGAGAGACCCATTAT
TGAGCATGCGTATGCCTTGTCATGTGAAGATGGTCGTTAAGGAAAGTGAA
GCGACAACAATACAGCAGACCAGGAGATAATGATAGAGAAACTATGTCAA
GAGAGGAGTGAGGGGGGAGACAAGCAACACTCATTAAAATCCGCACGTCA
ACAACGACAAGAACAAGAACAACATCAACATCATTCACAACGACGATGAG
GACGACAACAACAACAACAACAACTATAACAACAGCAGCAGCAACACCAT
TACCACCACCACCACCACCACCACCAGTGGGTGTACATATGAGGGGATGG
AGAAATGCGATAACGGCGAAGGGCGCGTCACGGTTCCCTTTCTCATACAT
TTTTCTCTTGTCCCAGAGCATTTTCTTGCACAGCTTGTCCTCTGTAGGTT
GGTGAACCGACAGCGCGAGGGTCCGTCCTCGGAGAAAGAAAGGGAAAGAT
GA

Coding sequence (CDS) from alignment at chr4:346566..349717-

>NO04G01100.1 ID=NO04G01100.1|Name=NO04G01100.1|organism=Nannochloropsis oceanica|type=CDS|length=1839bp|location=Sequence derived from alignment at chr4:346566..349717- (Nannochloropsis oceanica)
ATGGCCACCGCCTATGTACCCGCCCGACCCGCAAGTCTTGTCCTACCCAC
ATTTCAGAGGCCGCACGTGATTGCGCACCGCGGAGCGTGCGGATACTTGC
CGGAGCATACTCTCCAAGCCTACCGTCTGGCCATTGACCTGGGCGTGGAA
TACATCGAACCCGATCTCGTGCTCACTAAGGACGGTCACTTGATCTGCCG
CCACGACGTCGACCTCTCCGAAACCACCGACGTCTCTATCCGCCCTGAAT
TTGCAGGCCGGCGCCGCAACATCACCTTTGCTTCCGGCGTCGCCCCCCGC
GACCCCATCACCGGCGAAGCCCCCCTTGTGTCAGTCCAAGGGTTCTTTTC
CTTCGATTTCACTCTGGCGGAAATTAAGACGTTGCGGGCCAAGCAACGGT
TGAGCCAGCGGAGTAGCACGTATAATGGTCTCTTCCAAGTACCTACTTTC
GACGAAGTCATCGACATGGTCCGTGAAGCCGAAGGCACTATGGAGCGAAA
AGTGGGGATATATGCGGAGGTCAAGGAGCCTCACTTCTTCCACCTCAACG
GCTTTGACATCGAGAGCAAAGTCGTCCAAGTCCTCGAAATACCTTACGTG
CCTCTCGTCCAGCTCCTGCTCTCCCCCCTCTCGAAGGAGCACCCTTCCGT
CGGAGAGGGCGTCAGCCACCATCTTGGTCGAGAGGCCATGTACGGAGACG
TTCCTCTGAGCGAGATAGCGACATACGCGAGTGGCATAGGGCCTGCAAAG
AGCGTCTTTACCTCTATGGAACCTGCGGCGGCAAGGGCGGTGGTGGACGC
AGCGCATGAGCTTGATTTGGCGGTGCATCCCTGGACGTTTAGGAGAGAGG
CAATTTACGTGGATAGGACTTTTGAGAGCGATTCGGATGAGGAGTTGAGG
TATTTCTACGAGTGTTTGAATGTGGACGCGCTTTTCGTGGAGTTTCCTGA
CCAGGCGAGTATGGTGATAGAGAGGATGCTGAATGATGACAGTGGTGGCA
CAGCCGATGCTGCCACTGGCAGTGGGGTTGCTATCCCGTCCAATTCCGCT
GACCTTGGGGCGGGTGGTGCGTCTGGAATTGGCACGAAAACAACAGCGCT
GTTTCCGTCGCGGAGAGGGCGAAACAAGAGCAATCGCAGCAGCAGCACGG
CCACTCAGCATACCCCGCTCTTCACCCCAGCCTCTCCCTCGACTCCTTCC
TCCTCAGATTCTGTCACAAGTACCAGTACGAGCACTACCGAAAGCACAGG
AGGATCAGCTGGTATGGCACCAGCAGTAACCACACAATCATCACCGTCAG
CAGCAGCGGCAGCAGCACCAGCCGGGCCTTCAGCAGGGTCGACGGTGGCG
ATGCTCTTCAGTTCGTGGATAGGGGAGAGGGGAGAAAGCAGTGCACAGCG
GCAGAAGCTGGGGGGAGCGGAAGTCGTTTTGAGAAGAGGAACAGATGGAT
ATGCAGCAGCTGCTGCAGCGATAGCAGCAGCAGCAGTAGTTGTAGCAGTA
GCAGTAGTAGTAGTAGTAGCAGCAGCAGCAGCAGGAGAAGTAGCACTGAA
CAAGAACAACATCAACATCATTCACAACGACGATGAGGACGACAACAACA
ACAACAACAACTATAACAACAGCAGCAGCAACACCATTACCACCACCACC
ACCACCACCACCAGTGGGTGTACATATGAGGGGATGGAGAAATGCGATAA
CGGCGAAGGGCGCGTCACGGTTCCCTTTCTCATACATTTTTCTCTTGTCC
CAGAGCATTTTCTTGCACAGCTTGTCCTCTGTAGGTTGGTGAACCGACAG
CGCGAGGGTCCGTCCTCGGAGAAAGAAAGGGAAAGATGA

Synonyms

Publications