NO04G01080.1, NO04G01080.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO04G01080.1
Unique NameNO04G01080.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1073
Alignment locationchr4:342598..343670 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:342598..343670 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO04G01080.1 vs.
Match: EWM28515.1 (Thiopurine S-methyltransferase [Nannochloropsis gaditana])

HSP 1 Score: 313.5 bits (802), Expect = 5.800e-82
Identity = 149/240 (62.08%), Postives = 187/240 (77.92%), Query Frame = 0 
Query:    2 ATPPATTTTGSSSSSTPPEEPDQASFWDHIWVNEQIPKFDVQSPSPCLRQYLAQRKLPLTGRALVPGCGRGYDVLALAKAEGAEWKEIIGLDISPTGVAAARTYLEGALGKEEEEMKSWCHVEEGDFFKLKVER-EEGFTFIYDYTFFCAIKPDKREAWARQMQALLIPGTGVLMTLIFPICEKEGGPPYRVSLEGMRELLEPLGFVAEVLEMLPPGLSHPGRDGTTGPWKASSGVGLWK 241
            AT    +   + S S PPE+ DQ  FWD +W+NE +P+FD++  SPCL +YLA+ K+PLTGRALVPGCGRGYD+LALA A GA+W E++G+D+SPTGVAAA+ Y++   G+ EE+ K  C VE  DFF+  +   +E F+FIYDYTF CAI P  REAWARQM+ LL+P TGVLMTLI+PICEK+GGPPYR+SLE +R LLEP+GFVAE L +LP  L HPGRDGT+G WKA+SGVGLW+
Sbjct:    8 ATQAHASKNSTGSPSGPPEQADQRHFWDTLWINEPMPRFDMRCASPCLIRYLAEGKIPLTGRALVPGCGRGYDLLALATAAGAKWSEVLGMDLSPTGVAAAQAYIKE--GEAEEDKKRTCRVEHSDFFEYTLSTYDEKFSFIYDYTFACAIPPHLREAWARQMRDLLVPETGVLMTLIYPICEKDGGPPYRMSLEIIRGLLEPMGFVAETLCLLPQELCHPGRDGTSGQWKATSGVGLWR 245
The following BLAST results are available for this feature:
BLAST of NO04G01080.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28515.15.800e-8262.08Thiopurine S-methyltransferase [Nannochloropsis ga... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO04G01080NO04G01080Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO04G01080.1NO04G01080.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO04G01080.1.cds1NO04G01080.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO04G01080.1 ID=NO04G01080.1|Name=NO04G01080.1|organism=Nannochloropsis oceanica|type=mRNA|length=1073bp
ACTTGCTCACGCACATTCCTTTCCCCTTCCTTTCCTCCTCCCCTTCCCAT
CCCACCCTTTTTCCCCAGTACACGCACAGAGCCGACACCAAATCAACAAC
CAGCACCAATGGCCACTCCACCCGCCACCACCACCACCGGCAGCAGCAGC
AGTAGTACACCTCCCGAGGAGCCGGATCAAGCCTCTTTCTGGGATCATAT
CTGGGTGAATGAACAGATACCAAAGTTTGATGTCCAATCGCCCTCTCCTT
GCCTGCGTCAGTATCTCGCGCAGCGTAAGCTCCCTCTGACAGGCCGAGCC
CTTGTCCCAGGGTGTGGGAGAGGGTATGATGTGCTGGCGCTGGCGAAAGC
GGAGGGAGCAGAGTGGAAGGAAATTATTGGTTTAGATATATCGCCCACGG
GTGTGGCAGCTGCGCGGACGTATCTAGAAGGAGCACTGGGGAAGGAAGAA
GAGGAGATGAAGAGTTGGTGCCATGTGGAGGAAGGAGATTTTTTCAAGCT
GAAAGTAGAGAGAGAGGAAGGGTTCACCTTTATTTATGACTATACCTTTT
TCTGTGCCATTAAACCTGACAAAAGGGAGGCGTGGGCACGGCAGATGCAG
GCCTTGCTAATTCCTGGGACGGGCGTGTTGATGACGCTGATTTTCCCCAT
TTGTGAAAAGGAGGGAGGGCCGCCATATCGCGTGAGCTTGGAGGGCATGA
GAGAGCTATTGGAACCTTTGGGCTTTGTGGCCGAGGTTCTTGAGATGCTG
CCACCGGGCTTAAGTCACCCGGGGCGAGATGGGACAACGGGGCCATGGAA
GGCATCATCTGGAGTGGGACTGTGGAAGCGTCTGCAGGGACGGGATGGGG
AGCAAGGTCAAAATTAAAGGAGGGAAAAGGGGGGGGTCACAAAATGAGTG
CGCTGTAAATGTTCTTGTTGTGAGAGAAAGGGGGCATCTGCTCTGAACGT
AGGAGTCCCCGACGGGAGGCACACATACGCACACAACCGATTAACGAATG
AAGAACAATTGAGGTCAAGGTTGAAGAATTCATGGCCGATGTCGCCACAA
TTGTTGCTGCCCAAAGTCGCCTC
back to top

protein sequence of NO04G01080.1

>NO04G01080.1-protein ID=NO04G01080.1-protein|Name=NO04G01080.1|organism=Nannochloropsis oceanica|type=polypeptide|length=253bp
MATPPATTTTGSSSSSTPPEEPDQASFWDHIWVNEQIPKFDVQSPSPCLR
QYLAQRKLPLTGRALVPGCGRGYDVLALAKAEGAEWKEIIGLDISPTGVA
AARTYLEGALGKEEEEMKSWCHVEEGDFFKLKVEREEGFTFIYDYTFFCA
IKPDKREAWARQMQALLIPGTGVLMTLIFPICEKEGGPPYRVSLEGMREL
LEPLGFVAEVLEMLPPGLSHPGRDGTTGPWKASSGVGLWKRLQGRDGEQG
QN*
back to top

mRNA from alignment at chr4:342598..343670+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO04G01080.1 ID=NO04G01080.1|Name=NO04G01080.1|organism=Nannochloropsis oceanica|type=mRNA|length=1073bp|location=Sequence derived from alignment at chr4:342598..343670+ (Nannochloropsis oceanica)
ACTTGCTCACGCACATTCCTTTCCCCTTCCTTTCCTCCTCCCCTTCCCAT
CCCACCCTTTTTCCCCAGTACACGCACAGAGCCGACACCAAATCAACAAC
CAGCACCAATGGCCACTCCACCCGCCACCACCACCACCGGCAGCAGCAGC
AGTAGTACACCTCCCGAGGAGCCGGATCAAGCCTCTTTCTGGGATCATAT
CTGGGTGAATGAACAGATACCAAAGTTTGATGTCCAATCGCCCTCTCCTT
GCCTGCGTCAGTATCTCGCGCAGCGTAAGCTCCCTCTGACAGGCCGAGCC
CTTGTCCCAGGGTGTGGGAGAGGGTATGATGTGCTGGCGCTGGCGAAAGC
GGAGGGAGCAGAGTGGAAGGAAATTATTGGTTTAGATATATCGCCCACGG
GTGTGGCAGCTGCGCGGACGTATCTAGAAGGAGCACTGGGGAAGGAAGAA
GAGGAGATGAAGAGTTGGTGCCATGTGGAGGAAGGAGATTTTTTCAAGCT
GAAAGTAGAGAGAGAGGAAGGGTTCACCTTTATTTATGACTATACCTTTT
TCTGTGCCATTAAACCTGACAAAAGGGAGGCGTGGGCACGGCAGATGCAG
GCCTTGCTAATTCCTGGGACGGGCGTGTTGATGACGCTGATTTTCCCCAT
TTGTGAAAAGGAGGGAGGGCCGCCATATCGCGTGAGCTTGGAGGGCATGA
GAGAGCTATTGGAACCTTTGGGCTTTGTGGCCGAGGTTCTTGAGATGCTG
CCACCGGGCTTAAGTCACCCGGGGCGAGATGGGACAACGGGGCCATGGAA
GGCATCATCTGGAGTGGGACTGTGGAAGCGTCTGCAGGGACGGGATGGGG
AGCAAGGTCAAAATTAAAGGAGGGAAAAGGGGGGGGTCACAAAATGAGTG
CGCTGTAAATGTTCTTGTTGTGAGAGAAAGGGGGCATCTGCTCTGAACGT
AGGAGTCCCCGACGGGAGGCACACATACGCACACAACCGATTAACGAATG
AAGAACAATTGAGGTCAAGGTTGAAGAATTCATGGCCGATGTCGCCACAA
TTGTTGCTGCCCAAAGTCGCCTC
back to top

Coding sequence (CDS) from alignment at chr4:342598..343670+

>NO04G01080.1 ID=NO04G01080.1|Name=NO04G01080.1|organism=Nannochloropsis oceanica|type=CDS|length=759bp|location=Sequence derived from alignment at chr4:342598..343670+ (Nannochloropsis oceanica)
ATGGCCACTCCACCCGCCACCACCACCACCGGCAGCAGCAGCAGTAGTAC
ACCTCCCGAGGAGCCGGATCAAGCCTCTTTCTGGGATCATATCTGGGTGA
ATGAACAGATACCAAAGTTTGATGTCCAATCGCCCTCTCCTTGCCTGCGT
CAGTATCTCGCGCAGCGTAAGCTCCCTCTGACAGGCCGAGCCCTTGTCCC
AGGGTGTGGGAGAGGGTATGATGTGCTGGCGCTGGCGAAAGCGGAGGGAG
CAGAGTGGAAGGAAATTATTGGTTTAGATATATCGCCCACGGGTGTGGCA
GCTGCGCGGACGTATCTAGAAGGAGCACTGGGGAAGGAAGAAGAGGAGAT
GAAGAGTTGGTGCCATGTGGAGGAAGGAGATTTTTTCAAGCTGAAAGTAG
AGAGAGAGGAAGGGTTCACCTTTATTTATGACTATACCTTTTTCTGTGCC
ATTAAACCTGACAAAAGGGAGGCGTGGGCACGGCAGATGCAGGCCTTGCT
AATTCCTGGGACGGGCGTGTTGATGACGCTGATTTTCCCCATTTGTGAAA
AGGAGGGAGGGCCGCCATATCGCGTGAGCTTGGAGGGCATGAGAGAGCTA
TTGGAACCTTTGGGCTTTGTGGCCGAGGTTCTTGAGATGCTGCCACCGGG
CTTAAGTCACCCGGGGCGAGATGGGACAACGGGGCCATGGAAGGCATCAT
CTGGAGTGGGACTGTGGAAGCGTCTGCAGGGACGGGATGGGGAGCAAGGT
CAAAATTAA
back to top
Synonyms
Publications