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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr4 | genome | chr4:315573..319805 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO04G00980.1 vs.
Match: XP_002293181.1 (translation factor elongation factor ef-tu [Thalassiosira pseudonana CCMP1335]; EED89642.1 translation factor elongation factor ef-tu [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 597.4 bits (1539), Expect = 3.500e-167 Identity = 298/427 (69.79%), Postives = 343/427 (80.33%), Query Frame = 0
Query: 13 AISSSRQVACTLLKNSRNATKP------RVSRALSTAFQRTKPHLNIGTIGHVDHGKTTLTAAITKVLAEAGGAEFRSYDDIDKAPEERQRKITINTSHVEYETPKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSATDGAMPQTREHILLAKQVGIPRLVVFMNKCDMVKDEELLELVEMEVRELLDFYEFPGDDTPIIRGSALAAVNGTDDAIGKDAILKLMEAVDETIPTPPRDLDKPFLMPVEDVFSIAGRGTVVTGRVEQGKIKTGEEVEIVGLTAAPTKTTVTGVEMFKKTLDYGGAGDNVGCLLRTVKRDDVQRGQVLAAPGSVKTYKEFEAELYVLTQEEGGRHTPFLDNYRPQFYIRTSDVTGSITLGEGKEMAMPGDNTTVKVSLIYPTVLSEGLRFAVREGGRTVAAGVVAKL 434
AI++ Q LL NAT P R A F R KPH+NIGTIGHVDHGKTTLT AITKVL+E G ++ SY+DID+APEE+ RKITINTSH+EYET RHY H+DCPGHADYVKNMITGAAQMDGGILVV+ATDG MPQTREHILLAKQVG+P+LVVF+NKCDMV DEELLELVEME+RELLDFY+F GD+TPIIRGSALAA G D +G +A+L+LM AVDETIP P RDLDKPFLMP+EDVFSIAGRGTVVTGR+EQGK+ G+++E+VG KTT TGVEMFKK LDYG AGDNVG LLR +KR+DV+RGQVL PGS+ T K+FEAE+Y L+Q+EGGRHTPF NYRPQF+ RT+DVTG + L EG EM MPGDNTT+ V LI P + GLRF +REGGRTV G+V K+
Sbjct: 3 AITTLAQTTSRLLLRPTNATAPGLYLTRRTFAAAGDKFNRDKPHVNIGTIGHVDHGKTTLTQAITKVLSEKGWSKAMSYEDIDRAPEEKARKITINTSHIEYETANRHYGHIDCPGHADYVKNMITGAAQMDGGILVVAATDGPMPQTREHILLAKQVGMPKLVVFLNKCDMVDDEELLELVEMEIRELLDFYDFNGDETPIIRGSALAAAEGRDPELGANAVLELMAAVDETIPEPTRDLDKPFLMPIEDVFSIAGRGTVVTGRIEQGKVNVGDDLEVVGFN-HNAKTTCTGVEMFKKLLDYGMAGDNVGALLRGLKREDVERGQVLCKPGSISTAKKFEAEIYCLSQDEGGRHTPFFSNYRPQFFFRTADVTGDLKLREGTEMVMPGDNTTLDVELITPVPIEAGLRFNMREGGRTVGTGIVTKV 428
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO04G00980.1 ID=NO04G00980.1|Name=NO04G00980.1|organism=Nannochloropsis oceanica|type=mRNA|length=2010bp
CGCCGGTGTTGTCATCGGTCGCTTACCAAGAACGAGCGTGCGGCAGCAAG
CAGGAATAGGAACTGTGTTGTGCACACAAACCACGCCAGCACGTTAGCAA
ACCTTCCGGAGATATTAAAAAACACCTTCCTAGGCCTGATTAGCGTGCGG
AATGGCTTTACCATCGCACAACATCTCTCTCTCTCTCTGTTgcttcgtgt
tagcctccccaccccccaacccacccacctcagcaagcaagcaacagata
ctcgccactcggcgcatgccccgttctgtctaagtgtccctctcacctct
gcctacgctcatgtagacacaggaagaaggatggtgctctctatcatggc
gtcccgccaactggtggccattagcagcagtaggcaagtcgcctgtaccc
tgctcaagaacagcaggaacgccaccaaaccgcgagtaagccgtgccctg
tccacggccttccaacgcacaaagccccacttgaatattggcaccatcgg
acacgTCGACCACGGCAAGACCACGCTTACAGCCGCTATCACCAAGGTGC
TAGCTGAGGCGGGTGGCGCAGAGTTCCGCTCATACGACGATATTGACAAG
GCCCCGGAAGAGCGACAGCGCAAGATCACCATCAACACCTCGCATGTGGA
GTATGAGACACCCAAGCGGCATTATGCTCACGTGGACTGCCCGGGCCATG
CTGACTACGTCAAGAATATGATCACGGGCGCGGCCCAGATGGACGGCGGC
ATCCTGGTGGTGTCGGCCACCGACGGGGCCATGCCCCAGACGCGCGAACA
CATTCTTCTCGCTAAGCAAGTGGGCATACCCCGCCTGGTCGTCTTCATGA
ACAAATGCGACATGGTCAAGGACGAGGAGCTCTTGGAGCTGGTGGAGATG
GAAGTGCGTGAGCTCCTCGACTTCTACGAGTTCCCGGGTGATGACACCCC
CATCATCCGGGGCTCGGCCTTGGCAGCTGTCAATGGGACAGACGATGCGA
TCGGAAAGGACGCCATCCTGAAGCTGATGGAGGCCGTGGACGAGACCATT
CCTACCCCTCCCCGTGACTTGGACAAGCCGTTTTTGATGCCCGTGGAGGA
CGTTTTTTCGATCGCGGGGCGAGGAACAGTGGTGACGGGAAGGGTGGAGC
AGGGCAAGATCAAGACAGGGGAGGAGGTGGAAATCGTCGGTCTAACGGCT
GCGCCCACCAAGACGACCGTTACAGGCGTCGAAATGTTCAAAAAGACGTT
AGACTACGGCGGGGCCGGGGACAACGTCGGCTGCCTCCTCCGAACCGTCA
AGAGGGATGACGTCCAACGAGGGCAGGTGCTGGCGGCCCCGGGCTCAGTG
AAGACCTACAAGGAGTTCGAGGCGGAGTTGTATGTCCTGACGCAGGAGGA
AGGAGGGCGACACACGCCCTTTCTGGATAACTATCGACCGCAGTTCTACA
TCCGGACGTCGGACGTAACGGGCTCCATTACGTTGGGGGAGGGGAAAGAG
ATGGCAATGCCCGGGGACAACACCACGGTCAAGGTGTCGCTCATCTACCC
CACAGTGTTGAGCGAGGGGCTCCGATTTGCTGTCCGGGAAGGAGGCCGCA
CAGTCGCCGCAGGAGTAGTGGCCAAGTTAATCAAGTAAAGCGATTGGGAA
AGAACAAAGTGATTAGATGGGAGGGGACAACGATTTTGCGAGGTGGTGGG
AGGAGTGAGTATAGGAGGGGGCAGAACTAGGTTGGAATGTCGGTCCGGGT
GCATGTGCAAAGAGCAGCGAACGTATTTGCATGCGGCAGACACACGAAAT
CCAAAGCATCCACGGCGAAGAGTGACTAATCACGACACGTCGGGGCTCTT
TGAATCCCCCCTCCCTCGTCTATTCCGAATAGCATGGCGAAGGAAGGCCT
GCAGACACAAAGAAAGAAACACGAAAGAACGAACACAAAAGACATTGGAG
GGCAGCTCTGCATCTACCAATTGACTAAGTGAACCATGCACATTCTGATC
AACGACTTTC back to topprotein sequence of NO04G00980.1 >NO04G00980.1-protein ID=NO04G00980.1-protein|Name=NO04G00980.1|organism=Nannochloropsis oceanica|type=polypeptide|length=436bp
MVLSIMASRQLVAISSSRQVACTLLKNSRNATKPRVSRALSTAFQRTKPH
LNIGTIGHVDHGKTTLTAAITKVLAEAGGAEFRSYDDIDKAPEERQRKIT
INTSHVEYETPKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSATDGA
MPQTREHILLAKQVGIPRLVVFMNKCDMVKDEELLELVEMEVRELLDFYE
FPGDDTPIIRGSALAAVNGTDDAIGKDAILKLMEAVDETIPTPPRDLDKP
FLMPVEDVFSIAGRGTVVTGRVEQGKIKTGEEVEIVGLTAAPTKTTVTGV
EMFKKTLDYGGAGDNVGCLLRTVKRDDVQRGQVLAAPGSVKTYKEFEAEL
YVLTQEEGGRHTPFLDNYRPQFYIRTSDVTGSITLGEGKEMAMPGDNTTV
KVSLIYPTVLSEGLRFAVREGGRTVAAGVVAKLIK* back to topmRNA from alignment at chr4:315573..319805- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO04G00980.1 ID=NO04G00980.1|Name=NO04G00980.1|organism=Nannochloropsis oceanica|type=mRNA|length=4233bp|location=Sequence derived from alignment at chr4:315573..319805- (Nannochloropsis oceanica)
CGCCGGTGTTGTCATCGGTCGCTTACCAAGAACGAGCGTGCGGCAGCAAG
CAGGAATAGGAACTGTGTTGTGCACACAAACCACGCCAGCACGTTAGCAA
ACCTTCCGGAGATATTAAAAAACACCTTCCTAGGCCTGATTAGCGTGCGG
AATGGCTTTACCATCGCACAACATCTCTCTCTCTCTCTGTTGCTTCGTGT
TAGCCTCCCCACCCCCCAACCCACCCACCTCAGCAAGCAAGCAACAGATA
CTCGCCACTCGGCGCATGCCCCGTTCTGTCTAAGTGTCCCTCTCACCTCT
GCCTACGCTCATGTAGACACAGGAAGAAGGATGGTGCTCTCTATCATGGC
GTCCCGCCAACTGGTGGCCATTAGCAGCAGTAGGCAAGTCGCCTGTACCC
TGCTCAAGAACAGCAGGAACGGTACGTTTTTATTACGCGACGCGTGAAGG
GAAAACGTTTCGCAAAGGCAAAACAGGGGGAAGCTTGGACATGTACCAAG
ACGGTGGAGCTGCACTCTTTAAGAAAAAGTTCTTAACGCGGTGGTGTCCA
TCTCGCTCGCCCGTCCCTCCTTTCCCCCCCCCCCCCCCCCCCCTCGCATC
AACGCAGCCACCAAACCGCGAGTAAGCCGTGCCCTGTCCACGGCCTTCCA
ACGCACAAAGCCCCACTTGAATATTGGCACCATCGGACACGTCGACCACG
GCAAGACCACGCTTACAGCCGCTATCACCAAGGTAGGGAAGGAGGGAGGA
AACGCGGGGGGACGGGTCAAACGGTCGTCCCCGACAGAGGTACATACCCA
CAACAGAGACTCATCCATTCATTCTTTCGTTTCTGCCGTCTCCCGACAGG
TGCTAGCTGAGGCGGGTGGCGCAGAGTTCCGCTCATACGACGATATTGAC
AAGGCCCCGGAAGAGCGACAGCGGTACGTGCTACTGCTTGCTTGTCCCTC
CCTCCGTTCCTTCCTTCCTCCCTCCCTCCCTCCCGTCCTCCGACTCACCC
ATCTTTTATTGATGTGCTCCACAGCAAGATCACCATCAACACCTCGCATG
TGGAGTATGAGACACCCAAGCGGCATTATGCTCACGTGGACTGCCCGGGC
CATGCTGACTACGTCAAGAATATGATCACGGGCGCGGCCCAGATGGACGG
TACGTCGCCCTCCCTCCCTTCCTCTCTCTCTCCCTCCCTCCCTCTCTCCC
TCCCGCCCTCTTTATTTCTCGCGTTCCCGTAGCCATGGCTATTCTATGAC
ATGAAAATTGAGCGGCACGTCGCTTTATCCCCCTTCCCTCCCTTTCTCAC
CTTCACCCTTCCTCCCTCCCTCCCTCCCTCCCTTCCCCCAGGCGGCATCC
TGGTGGTGTCGGCCACCGACGGGGCCATGCCCCAGACGCGCGAACACATT
CTTCTCGCTAAGCAAGTGGGCATACCCCGCCTGGTCGTCTTCATGAACAA
ATGCGACATGGTCAAGGACGAGGAGCTCTTGGAGCTGGTGGAGATGGAAG
GTGAGGGAGGGAGGGAGGGAGGGAGGGGGGGGGGGGGGGGGAAGGGTTAC
ACACATCAGTATTAAGTGCTTGAAAGATGCGATATTTATATAAATTAAGT
AATGAGTACCTTAGTGCACGATTCGCCGCTCCAGTGGTGCAGTATATGCA
TAGATAGAACAAATATGTACGTGTGTAGCTCCCATCGCTGTCAAAGGATC
AGAAAGGGTGTATTACTGACGAGTGGGGGCAGTAGATGTCTCATCCTCCC
TCCTCCCTCCCTGACTTCCTCCTTGTCTCCCTCCAGTGCGTGAGCTCCTC
GACTTCTACGAGTTCCCGGGTGATGACACCCCCATCATCCGGGGCTCGGC
CTTGGCAGCTGTCAATGGGACAGACGATGCGATCGGGTAGGTACCCTGTC
CCTCCCTCCCTTCGTCTTTTACGTCTCCACCTGAGTACCCACGCACAATT
TGTCCCGTCCACAATATCCCCCCCTCCCTTCCTTCCTCCCTCCCTTCCTC
AGAAAGGACGCCATCCTGAAGCTGATGGAGGCCGTGGACGAGACCATTCC
TACCCCTCCCCGTGACTTGGACAAGCCGTTTTTGATGCCCGTGGAGGACG
TTTTTTCGATCGCGGGGCGAGGAACAGTGGTGACGGGAAGGGTGGAGCAG
GTGAGGGAGGGAGGGAAGGAGGGAGGGAGGGAGGGGGGGACCTGTGACGG
GAAGGATGGAGCAGGTGACGAGGGAAGGAGGGAAGGAGGGAAGGAGGGAG
GGAGGGCGGGTAGGCAGTTATGTCTTAGACGACAGTGAGTTGACATTCTG
TTTCTCACCACTTTCCTCGTTCCATCCCTCCCTCCTTCCCTCCCTTCTTC
CCTCCCTCCTTCAACAGGGCAAGATCAAGACAGGGGAGGAGGTGGAAATC
GTCGGTCTAACGGCTGCGCCCACCAAGACGACCGTTACAGGTAGGGGAGG
AGGGAGGAGGGACGGAGAAAGGGAAGGAGGGAGGGAGGGAGGGAGGGGGG
AAGGAGTCGGAGGGAGACAACGATGAGGGGGAGGGAGGGGGGGAGGGTGT
GTATAGAAGGACGTGCATCCCACAACTTGGGGGTGGCACCAATCGATGGT
TTGCCATCCTTGATAAGCTGCGGAAAGAACGATCACCCTCGCTTCCTCCC
GCGCTCCCTCCCTCCTCCTTCCTTTTGCTTAGATGAAGGAGGGAGGGAGA
GAGGGAGGGAGGGGGGGGAGGGAGGGTGGCTTAGACCCTGTTTTACGTGC
GGTTGTTTTCCCAATTTCTATGAGATCCAACTGCCCCGTGACAGGGGGAC
ATATCCATGATTGATTGCCCCCTCTCCCTCCCTTCCCCCGTCCCTCTCCC
CCTCCTTTCCTGCCTCCCTCCCAGCTCTAGTCTCTTCTCTGGGTCGCTCA
GTGGCAGGCGCAAAGTGTCATCTCTCGTCGACTTCACCCCTCCCTCCCGC
TTTCCCCCCTCACCCTCCCTTGCTTGCTCTCAGGCGTCGAAATGTTCAAA
AAGACGTTAGACTACGGCGGGGCCGGGGACAACGTCGGCTGCCTCCTCCG
AACCGTCAAGAGGGATGACGTCCAACGAGGGCAGGTGCTGGCGGCCCCGG
GCTCAGTGAAGACCTACAAGGAGTTCGAGGCGGAGTTGTATGTCCTGACG
CAGGAGGAAGGTAGGCTAGGGCCCATGCCCTCTTGCACTTTTGGCTGTAT
GGCTGTATTGCTGTACTATTGTATACAAGTCTTGACCAAACCGTTTCTCG
CCAACGGCAGGTCCCTGTTCGTTTCCGGGTATTTCTCTTCCTGCCTTTCC
TCTTCTTGTGCTTACCCTTGTTTTCACTCCTTTATTTTCTCATTCCTCCC
TCCCTGCCTGCCTGCCTGCCTGTGTTCCTTCCTCCTTGTGTCCCAGACGG
TCTTCTTCGTCTCCACATTTCTCATCCATCCATGCATTCACCCCCTCCCC
TCCCTCCCCTCCTTCCCCCGTCCCTGCAGGAGGGCGACACACGCCCTTTC
TGGATAACTATCGACCGCAGTTCTACATCCGGACGTCGGACGTAACGGGC
TCCATTACGTTGGGGGAGGGGAAAGAGATGGCAATGCCCGGGGACAACAC
CACGGTCAAGGTACGGGGGAGGGAGGGACGGATGGAGGGAGGACACAAAA
GACTTTCAGCCTTAAGAAATGGTAGAATCGCATAGGTAGGCTTATGTTTT
CATCTTTTTTCCTTCCGCCCTCCCTCCCTCCCTCCCTTCCTCCCTCCCTC
CCTCAGGTGTCGCTCATCTACCCCACAGTGTTGAGCGAGGGGCTCCGATT
TGCTGTCCGGGAAGGAGGCCGCACAGTCGCCGCAGGAGTAGTGGCCAAGT
TAATCAAGTAAAGCGATTGGGAAAGAACAAAGTGATTAGATGGGAGGGGA
CAACGATTTTGCGAGGTGGTGGGAGGAGTGAGTATAGGAGGGGGCAGAAC
TAGGTTGGAATGTCGGTCCGGGTGCATGTGCAAAGAGCAGCGAACGTATT
TGCATGCGGCAGACACACGAAATCCAAAGCATCCACGGCGAAGAGTGACT
AATCACGACACGTCGGGGCTCTTTGAATCCCCCCTCCCTCGTCTATTCCG
AATAGCATGGCGAAGGAAGGCCTGCAGACACAAAGAAAGAAACACGAAAG
AACGAACACAAAAGACATTGGAGGGCAGCTCTGCATCTACCAATTGACTA
AGTGAACCATGCACATTCTGATCAACGACTTTC back to topCoding sequence (CDS) from alignment at chr4:315573..319805- >NO04G00980.1 ID=NO04G00980.1|Name=NO04G00980.1|organism=Nannochloropsis oceanica|type=CDS|length=1308bp|location=Sequence derived from alignment at chr4:315573..319805- (Nannochloropsis oceanica)
ATGGTGCTCTCTATCATGGCGTCCCGCCAACTGGTGGCCATTAGCAGCAG
TAGGCAAGTCGCCTGTACCCTGCTCAAGAACAGCAGGAACGCCACCAAAC
CGCGAGTAAGCCGTGCCCTGTCCACGGCCTTCCAACGCACAAAGCCCCAC
TTGAATATTGGCACCATCGGACACGTCGACCACGGCAAGACCACGCTTAC
AGCCGCTATCACCAAGGTGCTAGCTGAGGCGGGTGGCGCAGAGTTCCGCT
CATACGACGATATTGACAAGGCCCCGGAAGAGCGACAGCGCAAGATCACC
ATCAACACCTCGCATGTGGAGTATGAGACACCCAAGCGGCATTATGCTCA
CGTGGACTGCCCGGGCCATGCTGACTACGTCAAGAATATGATCACGGGCG
CGGCCCAGATGGACGGCGGCATCCTGGTGGTGTCGGCCACCGACGGGGCC
ATGCCCCAGACGCGCGAACACATTCTTCTCGCTAAGCAAGTGGGCATACC
CCGCCTGGTCGTCTTCATGAACAAATGCGACATGGTCAAGGACGAGGAGC
TCTTGGAGCTGGTGGAGATGGAAGTGCGTGAGCTCCTCGACTTCTACGAG
TTCCCGGGTGATGACACCCCCATCATCCGGGGCTCGGCCTTGGCAGCTGT
CAATGGGACAGACGATGCGATCGGAAAGGACGCCATCCTGAAGCTGATGG
AGGCCGTGGACGAGACCATTCCTACCCCTCCCCGTGACTTGGACAAGCCG
TTTTTGATGCCCGTGGAGGACGTTTTTTCGATCGCGGGGCGAGGAACAGT
GGTGACGGGAAGGGTGGAGCAGGGCAAGATCAAGACAGGGGAGGAGGTGG
AAATCGTCGGTCTAACGGCTGCGCCCACCAAGACGACCGTTACAGGCGTC
GAAATGTTCAAAAAGACGTTAGACTACGGCGGGGCCGGGGACAACGTCGG
CTGCCTCCTCCGAACCGTCAAGAGGGATGACGTCCAACGAGGGCAGGTGC
TGGCGGCCCCGGGCTCAGTGAAGACCTACAAGGAGTTCGAGGCGGAGTTG
TATGTCCTGACGCAGGAGGAAGGAGGGCGACACACGCCCTTTCTGGATAA
CTATCGACCGCAGTTCTACATCCGGACGTCGGACGTAACGGGCTCCATTA
CGTTGGGGGAGGGGAAAGAGATGGCAATGCCCGGGGACAACACCACGGTC
AAGGTGTCGCTCATCTACCCCACAGTGTTGAGCGAGGGGCTCCGATTTGC
TGTCCGGGAAGGAGGCCGCACAGTCGCCGCAGGAGTAGTGGCCAAGTTAA
TCAAGTAA back to top
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