NO04G00790.1, NO04G00790.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO04G00790.1
Unique NameNO04G00790.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1327
Alignment locationchr4:268338..270627 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:268338..270627 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO04G00790.1 vs.
Match: OEU15759.1 (calcium/proton exchanger [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 322.8 bits (826), Expect = 1.400e-84
Identity = 179/352 (50.85%), Postives = 242/352 (68.75%), Query Frame = 0 
Query:    3 LGKYLNVLFVFMPLGLMARYMEWGPGPVFFLNFVALIPLASMLGDLTEEVADYMGDTIGGLMNASFGNAVEMVIGVQALVHNEIRVVQASLLGSVLSNLLLVLGCSFLFGGIKYPEQKFNSTAAVANLALLFLATIALVVPTPIGHSYDLTLKEELRISRAAALFLLAMGKGGGAEGEVEGREKEEEEGGEEEEEEEEEEKLGLWPAVVGLVVVTAIVAVFSELLVASIDDVCKTYDISKVFVGVILIPIVGNATEHMTAVSVAYKNRMELAMGIAVGSATQISVFVIPFLVIAGWIMDKPMTLNFTPVELVLYIMSVIITIPVLSAGSSNWIHGSLLITCYIFIAFAIWHE 355
            +GK ++ L +F P  L A Y+ WGP  VF+LNF+ +IPLAS+LGD TEE A +  D +GGL+NASFGNAVE+V+G  AL+ +EIRVVQAS++GS+ SNLLLVLGC F FGG+ Y EQKF+S  A  ++ LL L++IAL++PTP    Y++  K+ L ISRA+A FL+           +  +     E  EE++ EEEE  + +W A+ GL + T +V +FS  LV SI+  C    +SK FVG+I++PIVGNA EH+TAVSVA KN+M+LA+G+AVGS+TQIS+FV+P  VI GW + KPMTLN+   E+ LYI+S+      L  G SNW+ GS+LIT Y  +    W E
Sbjct:   32 IGKPISFLLLFFPFALAAYYLNWGPQWVFWLNFLVMIPLASILGDFTEEAALHTNDVVGGLLNASFGNAVEVVVGFNALMKDEIRVVQASMIGSIFSNLLLVLGCCFFFGGLYYKEQKFSSLNATTSMGLLALSSIALILPTPFAEYYEIEDKDVLIISRASACFLIFT-----YVQLLYFQLFTHREIFEEDDIEEEEASIPMWMALTGLCLTTGLVTIFSNFLVDSINGFCTESGVSKTFVGLIILPIVGNAVEHITAVSVAMKNKMDLAIGVAVGSSTQISLFVVPVTVIFGWCVGKPMTLNYPIYEISLYILSIFTVSVCLGTGKSNWLLGSVLITTYFMLGIGFWFE 378
The following BLAST results are available for this feature:
BLAST of NO04G00790.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
OEU15759.11.400e-8450.85calcium/proton exchanger [Fragilariopsis cylindrus... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO04G00790NO04G00790Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO04G00790.1NO04G00790.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO04G00790.1.cds1NO04G00790.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G00790.1.cds2NO04G00790.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G00790.1.cds3NO04G00790.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G00790.1.cds4NO04G00790.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G00790.1.cds5NO04G00790.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G00790.1.cds6NO04G00790.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G00790.1.cds7NO04G00790.1.cds7Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO04G00790.1 ID=NO04G00790.1|Name=NO04G00790.1|organism=Nannochloropsis oceanica|type=mRNA|length=1327bp
ATGGTCCTGGGCAAATATCTAAATGTGCTGTTTGTGTTCATGCCCTTGGG
ACTGATGGCGCGGTACATGGAGTGGGGGCCCGGGCCGGTGTTTTTTTTGA
ATTTTGTGGCGTTGATACCGTTGGCCTCGATGCTCGGGGATTTGACGGAG
GAGGTCGCTGATTACATGGGCGACACTATCGGGGGGCTCATGAACGCCTC
CTTCGGCAACGCTGTAGAGATGGTGATCGGGGTACAGGCCCTTGTCCACA
ACGAAATTCGCGTCGTTCAGGCCTCCCTCCTGGGGTCCGTGCTCTCCAAC
CTGCTCTTGGTCCTCGGTTGTTCCTTCTTGTTCGGAGGGATCAAATACCC
GGAACAGAAATTCAACAGCACGGCCGCCGTTGCGAACTTGGCCCTCCTCT
TCCTCGCAACCATCGCCCTGGTCGTCCCCACCCCCATCGGACACTCCTAC
GACCTCACCCTAAAAGAGGAGTTGCGGATCTCGCGAGCGGCGGCCTTGTT
CCTTCTGGCCATGGGGAAGGGAGGGGGGGCGGAGGGGGAGGTGGAAGGGA
GGGAGAAGGAGGAGGAGGAGGGAGGGGAGGAGGAAGAGGAGGAGGAGGAG
GAGGAAAAGCTGGGGCTGTGGCCGGCAGTGGTAGGGCTGGTGGTGGTCAC
GGCCATCGTGGCCGTTTTCTCCGAGCTGTTGGTGGCGAGCATCGATGACG
TATGTAAGACGTATGACATTAGCAAGGTGTTTGTGGGCGTGATCCTCATC
CCCATCGTGGGGAATGCCACCGAGCACATGACAGCTGTCAGTGTGGCGTA
CAAGAACAGGATGGAGCTCGCTATGGGCATCGCTGTGGGTTCTGCGACGC
AGATCAGCGTCTTCGTCATCCCATTTTTGGTGATTGCCGGATGGATCATG
GACAAGCCTATGACCCTTAACTTCACGCCCGTCGAGCTCGTCCTCTACAT
TATGAGTGTGATAATTACAATTCCCGTGTTGAGCGCCGGGAGCAGCAACT
GGATCCACGGCTCCCTCCTCATCACGTGCTACATTTTCATCGCCTTCGCC
ATCTGGCATGAGGATGAGACGCCGATAACGGGGGTGGAGGGGATAGGTCG
TCGCCTGTAGGATGAGTGGGCTTGGGAAGGACAGTAGATAAAATAGGTGG
GAGAGAGGGAGGGAGTCAAGGAGGGAGGTATCGTTTGGCGCGAGACTGAT
GCGTTGCGGTATGTAGCGGAAATAGCTGCCGCGTGGGATGGGTTGTAAAG
AAGGAGGGGGGGACGGAGGGAGGGAAGGAGGGGAGGAAGGCTGTTAAGTG
GGAGGGGATGTAAAGAAGGAGGGAGGG
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protein sequence of NO04G00790.1

>NO04G00790.1-protein ID=NO04G00790.1-protein|Name=NO04G00790.1|organism=Nannochloropsis oceanica|type=polypeptide|length=370bp
MVLGKYLNVLFVFMPLGLMARYMEWGPGPVFFLNFVALIPLASMLGDLTE
EVADYMGDTIGGLMNASFGNAVEMVIGVQALVHNEIRVVQASLLGSVLSN
LLLVLGCSFLFGGIKYPEQKFNSTAAVANLALLFLATIALVVPTPIGHSY
DLTLKEELRISRAAALFLLAMGKGGGAEGEVEGREKEEEEGGEEEEEEEE
EEKLGLWPAVVGLVVVTAIVAVFSELLVASIDDVCKTYDISKVFVGVILI
PIVGNATEHMTAVSVAYKNRMELAMGIAVGSATQISVFVIPFLVIAGWIM
DKPMTLNFTPVELVLYIMSVIITIPVLSAGSSNWIHGSLLITCYIFIAFA
IWHEDETPITGVEGIGRRL*
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mRNA from alignment at chr4:268338..270627+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO04G00790.1 ID=NO04G00790.1|Name=NO04G00790.1|organism=Nannochloropsis oceanica|type=mRNA|length=2290bp|location=Sequence derived from alignment at chr4:268338..270627+ (Nannochloropsis oceanica)
ATGGTCCTGGGCAAATATCTAAATGTGCTGTTTGTGTTCATGCCCTTGGG
ACTGATGGCGCGGTACATGGAGTGGGGGCCCGGGCCGGTGTTTTTTTTGA
ATTTTGTGGCGTTGATACCGTTGGCCTCGATGCTCGGGGATTTGACGGAG
GAGGTCGCTGATTACATGGGCGACACTAGTGAGGAGGGAGGGAGGGAGGG
AGGGAGGGAGGGGATGGGGATCATATAGACTCATTCATACACTCGATACG
GTGATGACATTGATAAGCAGAAGCTCCTTTTCACTCATCCCCTTCCTCCT
TCCCTCTCTCCCCTCCAGTCGGGGGGCTCATGAACGCCTCCTTCGGCAAC
GCTGTAGAGATGGTGATCGGGGTACAGGCCCTTGTCCACAACGAAATTCG
CGTCGTTCAGGCCTCCCTCCTGGGGTCCGTGCTCTCCAACCTGCTCTTGG
TCCTCGGTTGTTCCTTCTTGTTCGGAGGGATCAAATACCCGGAACAGGTA
AAAAGCCCCTCCCTCCCTCCCTCCCTCCCCCGTTGTCTCCTCCCACAAGG
GAAGCTTACTGGCACGCCCTCTCCCTCCCTCCCTCCCTTCCTCCCTCCCC
TTCGCTCACTCCCCCCTTCCCCCGCAGAAATTCAACAGCACGGCCGCCGT
TGCGAACTTGGCCCTCCTCTTCCTCGCAACCATCGCCCTGGTCGTCCCCA
CCCCCATCGGACACTCCTACGACCTCACCCTAAAAGAGGAGTTGCGGATC
TCGCGAGCGGCGGCCTTGTTCCTTCTGGCCATGTACATTCAGTTGTTGTT
CTTCCAGATGGTCACCCACAAGCACCTCTTCATCGACACGGACAGGGGGG
AACCCCTCCTGACGAGGGCGGGGGGCGCGGCAGGGGGAAGGGAGGGGGGG
CGGAGGGGGAGGTGGAAGGGAGGGAGAAGGAGGAGGAGGAGGGAGGGGAG
GAGGAAGAGGAGGAGGAGGAGGAGGAAAAGCTGGGGCTGTGGCCGGCAGT
GGTAGGGCTGGTGGTGGTCACGGCCATCGTGGCCGTTTTCTCCGAGCTGT
TGGTGGCGAGCATCGATGACGTATGTAAGACGTATGACATTAGCAAGGTA
GGGAGGAGGGAGGGAGGGATGGATGGATGATGAAATTTTCGTGGGGAATG
CCACCGAGCTCATGACAGCTGTCAGCGTGGCCTTTAATAACAGAAACTCA
CCCTTCATCCCTCCCTCCGTCCATCCCTCCGTCCCTCCCCCCTCAGGTGT
TTGTGGGCGTGATCCTCATCCCCATCGTGGGGAATGCCACCGAGCACATG
ACAGCTGTCAGTGTGGCGTACAAGAACAGGATGGAGCTCGCTATGGGCAT
CGCTGTGGGTTCTGCGACGCAGATCAGGTGGGTGCTTGCCCTCCCTCGCT
CCCTCCCCTTCCCTCCCTCCATCCTTCCAGGGTATTCACTTGCTCGCAGG
TCTCTCACCTGTTGAATCCCCCCCCCTTCCCTCCCCTCCCTCCCCCCCTC
CCTCCCTCCCTTTCCCTTAGCGTCTTCGTCATCCCATTTTTGGTGATTGC
CGGATGGATCATGGACAAGCCTATGACCCTTAACTTCACGCCCGTCGAGC
TCGTCCTCTACATTATGAGTGTGATAATTACAATTCCCGTGTTGAGGTAC
GGGAGGGAGGGAAGGAGGGAGGGAGGGAAGGAGGGAAGGCGGGAAGGAGG
GAGGGAGGGATATGACTCACAGTTCGAAATGCCCGTTCGCTCCTTTTTTG
GATGGATGCCGTGAGTGAAGTACCATTAACCTTCCGATTTTGAAGCAAAG
AGCATTGAGGAGGAAAAAAGGAAGGGAAGCAGGGAGGGAGGAGCTGGCGG
CGGAGTCTTCTCAACCCCAAATTGAATCGAACCACTCCCTCATTTTTCCC
CTTCTCCTCCTTTCTTCTCCTATTTCCTGCTCTCCTTCCCCCTTAGCGCC
GGGAGCAGCAACTGGATCCACGGCTCCCTCCTCATCACGTGCTACATTTT
CATCGCCTTCGCCATCTGGCATGAGGATGAGACGCCGATAACGGGGGTGG
AGGGGATAGGTCGTCGCCTGTAGGATGAGTGGGCTTGGGAAGGACAGTAG
ATAAAATAGGTGGGAGAGAGGGAGGGAGTCAAGGAGGGAGGTATCGTTTG
GCGCGAGACTGATGCGTTGCGGTATGTAGCGGAAATAGCTGCCGCGTGGG
ATGGGTTGTAAAGAAGGAGGGGGGGACGGAGGGAGGGAAGGAGGGGAGGA
AGGCTGTTAAGTGGGAGGGGATGTAAAGAAGGAGGGAGGG
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Coding sequence (CDS) from alignment at chr4:268338..270627+

>NO04G00790.1 ID=NO04G00790.1|Name=NO04G00790.1|organism=Nannochloropsis oceanica|type=CDS|length=1110bp|location=Sequence derived from alignment at chr4:268338..270627+ (Nannochloropsis oceanica)
ATGGTCCTGGGCAAATATCTAAATGTGCTGTTTGTGTTCATGCCCTTGGG
ACTGATGGCGCGGTACATGGAGTGGGGGCCCGGGCCGGTGTTTTTTTTGA
ATTTTGTGGCGTTGATACCGTTGGCCTCGATGCTCGGGGATTTGACGGAG
GAGGTCGCTGATTACATGGGCGACACTATCGGGGGGCTCATGAACGCCTC
CTTCGGCAACGCTGTAGAGATGGTGATCGGGGTACAGGCCCTTGTCCACA
ACGAAATTCGCGTCGTTCAGGCCTCCCTCCTGGGGTCCGTGCTCTCCAAC
CTGCTCTTGGTCCTCGGTTGTTCCTTCTTGTTCGGAGGGATCAAATACCC
GGAACAGAAATTCAACAGCACGGCCGCCGTTGCGAACTTGGCCCTCCTCT
TCCTCGCAACCATCGCCCTGGTCGTCCCCACCCCCATCGGACACTCCTAC
GACCTCACCCTAAAAGAGGAGTTGCGGATCTCGCGAGCGGCGGCCTTGTT
CCTTCTGGCCATGGGGAAGGGAGGGGGGGCGGAGGGGGAGGTGGAAGGGA
GGGAGAAGGAGGAGGAGGAGGGAGGGGAGGAGGAAGAGGAGGAGGAGGAG
GAGGAAAAGCTGGGGCTGTGGCCGGCAGTGGTAGGGCTGGTGGTGGTCAC
GGCCATCGTGGCCGTTTTCTCCGAGCTGTTGGTGGCGAGCATCGATGACG
TATGTAAGACGTATGACATTAGCAAGGTGTTTGTGGGCGTGATCCTCATC
CCCATCGTGGGGAATGCCACCGAGCACATGACAGCTGTCAGTGTGGCGTA
CAAGAACAGGATGGAGCTCGCTATGGGCATCGCTGTGGGTTCTGCGACGC
AGATCAGCGTCTTCGTCATCCCATTTTTGGTGATTGCCGGATGGATCATG
GACAAGCCTATGACCCTTAACTTCACGCCCGTCGAGCTCGTCCTCTACAT
TATGAGTGTGATAATTACAATTCCCGTGTTGAGCGCCGGGAGCAGCAACT
GGATCCACGGCTCCCTCCTCATCACGTGCTACATTTTCATCGCCTTCGCC
ATCTGGCATGAGGATGAGACGCCGATAACGGGGGTGGAGGGGATAGGTCG
TCGCCTGTAG
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Synonyms
Publications